CsGy4G015870 (gene) Cucumber (Gy14) v2

Overview
NameCsGy4G015870
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionRING-H2 finger protein ATL74
LocationChr4 : 20652431 .. 20654307 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTCATATCTTCTCTAGCTGTATTTATAATAAAAAGAAAAAAAAAGTAGCAAGTAAGGAAGAGGGAAAAGGAAAGGAAAGGTTGAAGAAAGAATACATAGCTGAGAGAGAAAAGCAGAAGAAATCTAAAAAGCACAAAACAAAGTATGAACGTTTTCTCTAATTGTGTTATTTTGTTGCATGTGAAGAGAGAGAGTTTGTTTGGTTAGCAAAATAATCACTCCTTTTATCTCAACAAATTACCTTTTTTTTATCTCATCATAAATATATAAAAGAAAGTTTAAAATATGAAATTTGATAAAATAATAACTTTTAATTAAGACTATATGTAAAGTTGATTGAAATGGTAAAGACCAAAACAATATTTTAAACTTAGAATGAGATTGAAAAGGAAAAAAGTGTTAGGAAGAATGGGAGTATGAGAGAAGGAAGGGATATTGTGGTAAAGGGTAACATCAAAGGGAAGTTTGAGTGTTTTTACAAGTATACGAGGTGTATGATTTACATCACAATTTTGGTATTAAAATTTTGTTCTTTTAATTTGTTACTCATCAATTCCTTTTTACATTTATTATAATCTCTACCTTCCTTTTCCAAACCTAAATTAAAGCTCCTTTCTAACATACTTTTCTTTTATTAAACTTTTAACTATTTAAAACACACATTACATTTTGCATTTGTTTGCCTCTCTTTAACTCATGCACTTCAAATTACAAGTTTGGGTATTTTCAGCTTCAAACTCTCACACACTTTAACTCATGCCCTCCTCACCCTTGCTCTCCACCAAGATAACCCTTCTTATTTGATATACAAAACATGCTAGAATTACCTTAATCTGACTCGAAAACCTATCCTAGATCATAATTTTTCTATAAATACTTCATTATATCTTTAGAAGAAATCTAGAGACTAATTTGACATAAATCCTTAAACAGTATAAGGACCAAACTGTACTCCTAAATTTTGGGCATTGTATCAAATTTTAAACATATAACTAATAATTGTATTAATTTAAACTATTAGCTTGGATAGTAAGTATAAATTAACCTCTTTATAACGAGTTGGAAGACTTCTTCAAATGATTAAATGAAAGTCTAATAAAGAATTTAAATGAAAAATTATAATTTTGATGTGATGTTTATTAAAAAACTATGTAATTTGGGTAGGTTGGAAATTGAGAGTTTAAATTAAGATGATATTTTTCCCAATATTAAATTAGGTATACATTCCATCATCTTCAACCATAACACTCTACAACTTTAAATATAAACTACTTGAGAAACAAATCAAATCCCAACCCATTTAAATTCCACAAAACTTCCCATACTTTTAATGTCCATTTCTTCACAAACTATATCCCCAAATACCCACCACACCCCCACCAAGTATGTTCAAGGTCCACCGCCACCAGCATTTCCAGCCCACACGACTCTCGACAACAACATGGTGATCCTCTTAGCGGCTCTGCTCTATGCCCTCGTCGGCGCACTCGTCATGAACTCAATTCTCCGCTGCATATGGCGGCGGTGGTGGAGCGCCGCCGCAGCAAGAGTCGAGAGGCAGGAATTGGAAGAGATTCCGGTGGCGGTTTACGAAGGGGAAGGGAGAATGAAAATCAGAGGTACGGAATGTGCGATTTGTTTAGGTGAATTCGAAAGTGGTGAGGGTTTGAGGATTATGCCCAAATGTAACCATGGATTTCATGTTCACTGTATTGATGCTTGGTTAGTTTCCCATTCCTCTTGCCCTAATTGTCGCCATAGTCTGCCAGTGAAGACGGTAGCGGATGGTGGCAGTGGCGGAGTTGGTGAGGTGCGGAGGGCGGGGAATGATGGGTCGGATGATATAATTATAATACTGATCGCAGCCATTTAG

mRNA sequence

ATGCTTCATATCTTCTCTAGCTGTATTTATAATAAAAAGAAAAAAAAAGTAGCAAGTAAGGAAGAGGGAAAAGGAAAGGAAAGGTTGAAGAAAGAATACATAGCTGAGAGAGAAAAGCAGAAGAAATCTAAAAAGCACAAAACAAAGAAGAATGGGAGTATGAGAGAAGGAAGGGATATTGTGGTAAAGGGTAACATCAAAGGGAAGTTTGAGTGTTTTTACAAGTATACGAGGTGTCCACCGCCACCAGCATTTCCAGCCCACACGACTCTCGACAACAACATGGTGATCCTCTTAGCGGCTCTGCTCTATGCCCTCGTCGGCGCACTCGTCATGAACTCAATTCTCCGCTGCATATGGCGGCGGTGGTGGAGCGCCGCCGCAGCAAGAGTCGAGAGGCAGGAATTGGAAGAGATTCCGGTGGCGGTTTACGAAGGGGAAGGGAGAATGAAAATCAGAGGTACGGAATGTGCGATTTGTTTAGGTGAATTCGAAAGTGGTGAGGGTTTGAGGATTATGCCCAAATGTAACCATGGATTTCATGTTCACTGTATTGATGCTTGGTTAGTTTCCCATTCCTCTTGCCCTAATTGTCGCCATAGTCTGCCAGTGAAGACGGTAGCGGATGGTGGCAGTGGCGGAGTTGGTGAGGTGCGGAGGGCGGGGAATGATGGGTCGGATGATATAATTATAATACTGATCGCAGCCATTTAG

Coding sequence (CDS)

ATGCTTCATATCTTCTCTAGCTGTATTTATAATAAAAAGAAAAAAAAAGTAGCAAGTAAGGAAGAGGGAAAAGGAAAGGAAAGGTTGAAGAAAGAATACATAGCTGAGAGAGAAAAGCAGAAGAAATCTAAAAAGCACAAAACAAAGAAGAATGGGAGTATGAGAGAAGGAAGGGATATTGTGGTAAAGGGTAACATCAAAGGGAAGTTTGAGTGTTTTTACAAGTATACGAGGTGTCCACCGCCACCAGCATTTCCAGCCCACACGACTCTCGACAACAACATGGTGATCCTCTTAGCGGCTCTGCTCTATGCCCTCGTCGGCGCACTCGTCATGAACTCAATTCTCCGCTGCATATGGCGGCGGTGGTGGAGCGCCGCCGCAGCAAGAGTCGAGAGGCAGGAATTGGAAGAGATTCCGGTGGCGGTTTACGAAGGGGAAGGGAGAATGAAAATCAGAGGTACGGAATGTGCGATTTGTTTAGGTGAATTCGAAAGTGGTGAGGGTTTGAGGATTATGCCCAAATGTAACCATGGATTTCATGTTCACTGTATTGATGCTTGGTTAGTTTCCCATTCCTCTTGCCCTAATTGTCGCCATAGTCTGCCAGTGAAGACGGTAGCGGATGGTGGCAGTGGCGGAGTTGGTGAGGTGCGGAGGGCGGGGAATGATGGGTCGGATGATATAATTATAATACTGATCGCAGCCATTTAG

Protein sequence

MLHIFSSCIYNKKKKKVASKEEGKGKERLKKEYIAEREKQKKSKKHKTKKNGSMREGRDIVVKGNIKGKFECFYKYTRCPPPPAFPAHTTLDNNMVILLAALLYALVGALVMNSILRCIWRRWWSAAAARVERQELEEIPVAVYEGEGRMKIRGTECAICLGEFESGEGLRIMPKCNHGFHVHCIDAWLVSHSSCPNCRHSLPVKTVADGGSGGVGEVRRAGNDGSDDIIIILIAAI
Homology
[Close]
BLAST of CsGy4G015870 vs. NCBI nr
Match: XP_011653722.1 (PREDICTED: RING-H2 finger protein ATL74 [Cucumis sativus] >KGN54449.1 hypothetical protein Csa_4G333870 [Cucumis sativus])

HSP 1 Score: 310.8 bits (795), Expect = 3.9e-81
Identity = 160/163 (98.16%), Postives = 161/163 (98.77%), Query Frame = 0 

Query: 75  KYTRCPPPPAFPAHTTLDNNMVILLAXXXXXXXXXXXMNSILRCIWRRWWSAAAARVERQ 134
           KY + PPPPAFPAHTTLDNNMVILLAXXXXXXXXXXXMNSILRCIWRRWWSAAAARVERQ
Sbjct: 18  KYVQGPPPPAFPAHTTLDNNMVILLAXXXXXXXXXXXMNSILRCIWRRWWSAAAARVERQ 77

Query: 135 ELEEIPVAVYEGEGRMKIRGTECAICLGEFESGEGLRIMPKCNHGFHVHCIDAWLVSHSS 194
           ELEEIPVAVYEGEGRMKIRGTECAICLGEFESGEGLRIMPKCNHGFHVHCIDAWLVSHSS
Sbjct: 78  ELEEIPVAVYEGEGRMKIRGTECAICLGEFESGEGLRIMPKCNHGFHVHCIDAWLVSHSS 137

Query: 195 CPNCRHSLPVKTVADGGSGGVGEVRRAGNDGSDDIIIILIAAI 238
           CPNCRHSLPVKTVADGGSGGVGEVRRAGNDGSDDIIIILIAAI
Sbjct: 138 CPNCRHSLPVKTVADGGSGGVGEVRRAGNDGSDDIIIILIAAI 180

[Close]
BLAST of CsGy4G015870 vs. NCBI nr
Match: XP_008463261.1 (PREDICTED: RING-H2 finger protein ATL74 [Cucumis melo])

HSP 1 Score: 248.4 bits (633), Expect = 2.4e-62
Identity = 123/174 (70.69%), Postives = 137/174 (78.74%), Query Frame = 0 

Query: 70  FECFYKYTRCPPPPAFPAHTTLDNNMVILLAXXXXXXXXXXXMNSILRCIWRRWWSAAAA 129
           F+    +T  PPP  FPA T L NNMVI LA           +NSI+RC+WRRWWS AAA
Sbjct: 2   FKIHRHFTAAPPP--FPAETNLGNNMVIGLAALLYALIGALVVNSIIRCVWRRWWS-AAA 61

Query: 130 RVERQELEEIPVAVYEGEGRMKIRGTECAICLGEFESGEGLRIMPKCNHGFHVHCIDAWL 189
           RVERQELE IPVAV+EGEGRM++RGTECAICLGEFESGE LRI+P+CNHGFHVHCIDAWL
Sbjct: 62  RVERQELEAIPVAVFEGEGRMRMRGTECAICLGEFESGEDLRILPQCNHGFHVHCIDAWL 121

Query: 190 VSHSSCPNCRHSLPVKTVADGGSGGVGEVRRAGNDG------SDDIIIILIAAI 238
           VSHSSCPNCRHS+P+KTV DGGSGG+ E+RR GN        SDDIIIILIAAI
Sbjct: 122 VSHSSCPNCRHSVPLKTVGDGGSGGISELRRPGNHRTHTGQLSDDIIIILIAAI 172

[Close]
BLAST of CsGy4G015870 vs. NCBI nr
Match: XP_022144089.1 (RING-H2 finger protein ATL74-like [Momordica charantia])

HSP 1 Score: 174.5 bits (441), Expect = 4.3e-40
Identity = 99/179 (55.31%), Postives = 117/179 (65.36%), Query Frame = 0 

Query: 70  FECFYKYTRCPP-PPAFPAHTTLDNNMVILLAXXXXXXXXXXXMNSILRCIWRRWW---- 129
           F+   ++   PP PP+  +   LD N+VI+LA           +NSILRC+ RR W    
Sbjct: 2   FQISRRFPALPPSPPSNTSEKNLDFNVVIVLAALLCALVGALAVNSILRCVARRRWGELS 61

Query: 130 --SAAAARVERQ-ELEEIPVAVYEGEGRMKIRGTECAICLGEFESGEGLRIMPKCNHGFH 189
             SAA A V+R+ ELEEIPVAV+ G    +IRGTECAICLGEFE G+ LRI+P C+HGFH
Sbjct: 62  RESAALAGVKRRGELEEIPVAVFAGAAEGRIRGTECAICLGEFEIGDDLRILPNCSHGFH 121

Query: 190 VHCIDAWLVSHSSCPNCRHSLPVKTVADGGSGGVGEVRRAGNDGSDDI---IIILIAAI 238
           V+CID W VSHSSCPNCRHSL  KT  DGG    GEVRR  N  S  +   IIILIAAI
Sbjct: 122 VNCIDHWFVSHSSCPNCRHSLLQKTAEDGGG---GEVRRPENPDSGQLPGDIIILIAAI 177

[Close]
BLAST of CsGy4G015870 vs. NCBI nr
Match: XP_022157309.1 (RING-H2 finger protein ATL74-like [Momordica charantia])

HSP 1 Score: 133.7 bits (335), Expect = 8.5e-28
Identity = 65/128 (50.78%), Postives = 85/128 (66.41%), Query Frame = 0 

Query: 84  AFPAHTTLDNNMVILLAXXXXXXXXXXXMNSILRCIWRRWWS----AAAARVERQELEEI 143
           A+     LD NMV++LA           MNSI+RC+ R   S    AAA  +++++L +I
Sbjct: 28  AYVGEMNLDANMVVILAALSCALIGALGMNSIVRCVLRCSQSPEGAAAATGLKKRDLGQI 87

Query: 144 PVAVY-----EGEGRMKIRGTECAICLGEFESGEGLRIMPKCNHGFHVHCIDAWLVSHSS 203
           PV VY     +G   + I+GT+CAICLGEF+ G+ LR++P CNHGFHV CID WL+SHSS
Sbjct: 88  PVGVYGIGGGDGGNMVNIKGTDCAICLGEFQPGDKLRMLPVCNHGFHVRCIDTWLLSHSS 147

[Close]
BLAST of CsGy4G015870 vs. NCBI nr
Match: XP_002323073.2 (RING-H2 finger protein ATL74 [Populus trichocarpa] >PNS99442.1 hypothetical protein POPTR_016G136200v3 [Populus trichocarpa])

HSP 1 Score: 131.0 bits (328), Expect = 5.5e-27
Identity = 72/152 (47.37%), Postives = 88/152 (57.89%), Query Frame = 0 

Query: 89  TTLDNNMVILLAXXXXXXXXXXXMNSILRCIWR-------RWWSAAAAR-----VERQEL 148
           T  D NMVI+LA           +NSI+RC+ R            AAAR     +++++L
Sbjct: 32  TNFDTNMVIILAALLCALIGALGLNSIVRCLLRCSSRFALETTEEAAARLAATGLKKRDL 91

Query: 149 EEIPVAVYEGEGRMKIRGTECAICLGEFESGEGLRIMPKCNHGFHVHCIDAWLVSHSSCP 208
            +IPVA+Y   G   I  TEC ICLGEF  GE +R++PKCNHGFHV CID WL+SHSSCP
Sbjct: 92  RQIPVAIYGAGG--SISATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCP 151

Query: 209 NCRHSLPVKTVADGGSGGVGEVRRAGNDGSDD 229
           NCRHSL   T     SG   EV  A   G +D
Sbjct: 152 NCRHSLLEHTT---DSGAAQEVTGAARPGEND 178

[Close]
BLAST of CsGy4G015870 vs. TAIR10
Match: AT5G01880.1 (RING/U-box superfamily protein)

HSP 1 Score: 113.2 bits (282), Expect = 2.2e-25
Identity = 49/77 (63.64%), Postives = 60/77 (77.92%), Query Frame = 0 

Query: 126 AAAARVERQELEEIPVAVYEGEGRMKIRGTECAICLGEFESGEGLRIMPKCNHGFHVHCI 185
           A  A ++++EL++ PVA Y G G +KI  TECAICLGEF  GE +R++P CNH FH+ CI
Sbjct: 75  ADRAGLKKRELKKFPVAEY-GSGEVKIAATECAICLGEFADGERVRVLPPCNHSFHMSCI 134

Query: 186 DAWLVSHSSCPNCRHSL 203
           D WLVSHSSCPNCRHSL
Sbjct: 135 DTWLVSHSSCPNCRHSL 150

[Close]
BLAST of CsGy4G015870 vs. TAIR10
Match: AT3G10910.1 (RING/U-box superfamily protein)

HSP 1 Score: 109.0 bits (271), Expect = 4.1e-24
Identity = 46/77 (59.74%), Postives = 60/77 (77.92%), Query Frame = 0 

Query: 126 AAAARVERQELEEIPVAVYEGEGRMKIRGTECAICLGEFESGEGLRIMPKCNHGFHVHCI 185
           AAA  +++Q L++IPV +Y G G + ++ TEC ICLG+FE GE +R++PKCNHGFHV CI
Sbjct: 84  AAATGLKKQALKQIPVGLY-GSGIIDMKATECLICLGDFEDGEKVRVLPKCNHGFHVRCI 143

Query: 186 DAWLVSHSSCPNCRHSL 203
           D WL+S SSCP CR SL
Sbjct: 144 DTWLLSRSSCPTCRQSL 159

[Close]
BLAST of CsGy4G015870 vs. TAIR10
Match: AT5G05280.1 (RING/U-box superfamily protein)

HSP 1 Score: 101.3 bits (251), Expect = 8.5e-22
Identity = 47/88 (53.41%), Postives = 62/88 (70.45%), Query Frame = 0 

Query: 128 AARVERQELEEIPVAVYEGEGRMKIRGTECAICLGEFESGEGLRIMPKCNHGFHVHCIDA 187
           A  ++++ L+ IPV  Y  E  +K++ TEC ICLG+F  GE +R++PKCNHGFHV CID 
Sbjct: 86  AKGIKKRALKVIPVDSYSPE--LKMKATECLICLGDFVEGETVRVLPKCNHGFHVKCIDT 145

Query: 188 WLVSHSSCPNCRHS-LPVKTVADGGSGG 215
           WL+SHSSCP CR S L  +T A+G   G
Sbjct: 146 WLLSHSSCPTCRQSLLEHQTPANGSRRG 171

[Close]
BLAST of CsGy4G015870 vs. TAIR10
Match: AT1G49210.1 (RING/U-box superfamily protein)

HSP 1 Score: 99.0 bits (245), Expect = 4.2e-21
Identity = 50/137 (36.50%), Postives = 69/137 (50.36%), Query Frame = 0 

Query: 81  PPPAFPAHTTLDNNMVILLAXXXXXXXXXXXMNSILRCIWRRW---------------WS 140
           P P       L  N+++LL+           ++ I+RC +RR                 S
Sbjct: 44  PSPLITHENNLKGNVLMLLSVLICGIICCLGLHYIIRCAFRRSSRFMISEPISSLSTPRS 103

Query: 141 AAAARVERQELEEIPVAVYEGEGRMKIRGTECAICLGEFESGEGLRIMPKCNHGFHVHCI 200
           ++   ++++ L   PV  Y  E  +   G EC ICL +F SGE LR++PKCNHGFHV CI
Sbjct: 104 SSNKGIKKKALRMFPVVSYSREMNLPGIGEECVICLSDFVSGEQLRLLPKCNHGFHVRCI 163

Query: 201 DAWLVSHSSCPNCRHSL 203
           D WL  H +CP CRH L
Sbjct: 164 DKWLQHHLTCPKCRHCL 180

[Close]
BLAST of CsGy4G015870 vs. TAIR10
Match: AT1G20823.1 (RING/U-box superfamily protein)

HSP 1 Score: 97.4 bits (241), Expect = 1.2e-20
Identity = 60/144 (41.67%), Postives = 85/144 (59.03%), Query Frame = 0 

Query: 81  PPPAFPAHT-TLDNNMVILLAXXXXXXXXXXXMNSILRCIWRRWWSA------------- 140
           P PA    T  L++++V++LA XXXXXXXX  + ++ RC+W R  +A             
Sbjct: 15  PSPAIDNSTAALNSDLVVILAAXXXXXXXXLGLIAVSRCVWLRRLAAGNRTVSGSQTQSP 74

Query: 141 ----AAAR--VERQELEEIPVAVYEGEGRMKIRGTECAICLGEFESGEGLRIMPKCNHGF 200
               AAA   ++++ L+ +P   +  E     +  ECAICL EF +G+ LR++P+C HGF
Sbjct: 75  QPPVAAANKGLKKKVLQSLPKLTFSPESPESEKFAECAICLAEFSAGDELRVLPQCGHGF 134

Query: 201 HVHCIDAWLVSHSSCPNCRHSLPV 205
           HV CID WL SHSSCP+CR  L V
Sbjct: 135 HVACIDTWLGSHSSCPSCRQILVV 158

[Close]
BLAST of CsGy4G015870 vs. Swiss-Prot
Match: sp|Q9LZV8|ATL74_ARATH (RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 3.9e-24
Identity = 49/77 (63.64%), Postives = 60/77 (77.92%), Query Frame = 0 

Query: 126 AAAARVERQELEEIPVAVYEGEGRMKIRGTECAICLGEFESGEGLRIMPKCNHGFHVHCI 185
           A  A ++++EL++ PVA Y G G +KI  TECAICLGEF  GE +R++P CNH FH+ CI
Sbjct: 75  ADRAGLKKRELKKFPVAEY-GSGEVKIAATECAICLGEFADGERVRVLPPCNHSFHMSCI 134

Query: 186 DAWLVSHSSCPNCRHSL 203
           D WLVSHSSCPNCRHSL
Sbjct: 135 DTWLVSHSSCPNCRHSL 150

[Close]
BLAST of CsGy4G015870 vs. Swiss-Prot
Match: sp|Q9SG96|ATL72_ARATH (RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 7.3e-23
Identity = 46/77 (59.74%), Postives = 60/77 (77.92%), Query Frame = 0 

Query: 126 AAAARVERQELEEIPVAVYEGEGRMKIRGTECAICLGEFESGEGLRIMPKCNHGFHVHCI 185
           AAA  +++Q L++IPV +Y G G + ++ TEC ICLG+FE GE +R++PKCNHGFHV CI
Sbjct: 84  AAATGLKKQALKQIPVGLY-GSGIIDMKATECLICLGDFEDGEKVRVLPKCNHGFHVRCI 143

Query: 186 DAWLVSHSSCPNCRHSL 203
           D WL+S SSCP CR SL
Sbjct: 144 DTWLLSRSSCPTCRQSL 159

[Close]
BLAST of CsGy4G015870 vs. Swiss-Prot
Match: sp|Q9FLC6|ATL73_ARATH (RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.5e-20
Identity = 47/88 (53.41%), Postives = 62/88 (70.45%), Query Frame = 0 

Query: 128 AARVERQELEEIPVAVYEGEGRMKIRGTECAICLGEFESGEGLRIMPKCNHGFHVHCIDA 187
           A  ++++ L+ IPV  Y  E  +K++ TEC ICLG+F  GE +R++PKCNHGFHV CID 
Sbjct: 86  AKGIKKRALKVIPVDSYSPE--LKMKATECLICLGDFVEGETVRVLPKCNHGFHVKCIDT 145

Query: 188 WLVSHSSCPNCRHS-LPVKTVADGGSGG 215
           WL+SHSSCP CR S L  +T A+G   G
Sbjct: 146 WLLSHSSCPTCRQSLLEHQTPANGSRRG 171

[Close]
BLAST of CsGy4G015870 vs. Swiss-Prot
Match: sp|Q6NML0|ATL76_ARATH (E3 ubiquitin-protein ligase ATL76 OS=Arabidopsis thaliana OX=3702 GN=ATL76 PE=1 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 7.6e-20
Identity = 50/137 (36.50%), Postives = 69/137 (50.36%), Query Frame = 0 

Query: 81  PPPAFPAHTTLDNNMVILLAXXXXXXXXXXXMNSILRCIWRRW---------------WS 140
           P P       L  N+++LL+           ++ I+RC +RR                 S
Sbjct: 44  PSPLITHENNLKGNVLMLLSVLICGIICCLGLHYIIRCAFRRSSRFMISEPISSLSTPRS 103

Query: 141 AAAARVERQELEEIPVAVYEGEGRMKIRGTECAICLGEFESGEGLRIMPKCNHGFHVHCI 200
           ++   ++++ L   PV  Y  E  +   G EC ICL +F SGE LR++PKCNHGFHV CI
Sbjct: 104 SSNKGIKKKALRMFPVVSYSREMNLPGIGEECVICLSDFVSGEQLRLLPKCNHGFHVRCI 163

Query: 201 DAWLVSHSSCPNCRHSL 203
           D WL  H +CP CRH L
Sbjct: 164 DKWLQHHLTCPKCRHCL 180

[Close]
BLAST of CsGy4G015870 vs. Swiss-Prot
Match: sp|Q9LM69|ATL80_ARATH (RING-H2 finger protein ATL80 OS=Arabidopsis thaliana OX=3702 GN=ATL80 PE=2 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.2e-19
Identity = 60/144 (41.67%), Postives = 85/144 (59.03%), Query Frame = 0 

Query: 81  PPPAFPAHT-TLDNNMVILLAXXXXXXXXXXXMNSILRCIWRRWWSA------------- 140
           P PA    T  L++++V++LA XXXXXXXX  + ++ RC+W R  +A             
Sbjct: 15  PSPAIDNSTAALNSDLVVILAAXXXXXXXXLGLIAVSRCVWLRRLAAGNRTVSGSQTQSP 74

Query: 141 ----AAAR--VERQELEEIPVAVYEGEGRMKIRGTECAICLGEFESGEGLRIMPKCNHGF 200
               AAA   ++++ L+ +P   +  E     +  ECAICL EF +G+ LR++P+C HGF
Sbjct: 75  QPPVAAANKGLKKKVLQSLPKLTFSPESPESEKFAECAICLAEFSAGDELRVLPQCGHGF 134

Query: 201 HVHCIDAWLVSHSSCPNCRHSLPV 205
           HV CID WL SHSSCP+CR  L V
Sbjct: 135 HVACIDTWLGSHSSCPSCRQILVV 158

[Close]
BLAST of CsGy4G015870 vs. TrEMBL
Match: tr|A0A0A0L057|A0A0A0L057_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G333870 PE=4 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 2.6e-81
Identity = 160/163 (98.16%), Postives = 161/163 (98.77%), Query Frame = 0 

Query: 75  KYTRCPPPPAFPAHTTLDNNMVILLAXXXXXXXXXXXMNSILRCIWRRWWSAAAARVERQ 134
           KY + PPPPAFPAHTTLDNNMVILLAXXXXXXXXXXXMNSILRCIWRRWWSAAAARVERQ
Sbjct: 18  KYVQGPPPPAFPAHTTLDNNMVILLAXXXXXXXXXXXMNSILRCIWRRWWSAAAARVERQ 77

Query: 135 ELEEIPVAVYEGEGRMKIRGTECAICLGEFESGEGLRIMPKCNHGFHVHCIDAWLVSHSS 194
           ELEEIPVAVYEGEGRMKIRGTECAICLGEFESGEGLRIMPKCNHGFHVHCIDAWLVSHSS
Sbjct: 78  ELEEIPVAVYEGEGRMKIRGTECAICLGEFESGEGLRIMPKCNHGFHVHCIDAWLVSHSS 137

Query: 195 CPNCRHSLPVKTVADGGSGGVGEVRRAGNDGSDDIIIILIAAI 238
           CPNCRHSLPVKTVADGGSGGVGEVRRAGNDGSDDIIIILIAAI
Sbjct: 138 CPNCRHSLPVKTVADGGSGGVGEVRRAGNDGSDDIIIILIAAI 180

[Close]
BLAST of CsGy4G015870 vs. TrEMBL
Match: tr|A0A1S3CKD5|A0A1S3CKD5_CUCME (RING-H2 finger protein ATL74 OS=Cucumis melo OX=3656 GN=LOC103501464 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 1.6e-62
Identity = 123/174 (70.69%), Postives = 137/174 (78.74%), Query Frame = 0 

Query: 70  FECFYKYTRCPPPPAFPAHTTLDNNMVILLAXXXXXXXXXXXMNSILRCIWRRWWSAAAA 129
           F+    +T  PPP  FPA T L NNMVI LA           +NSI+RC+WRRWWS AAA
Sbjct: 2   FKIHRHFTAAPPP--FPAETNLGNNMVIGLAALLYALIGALVVNSIIRCVWRRWWS-AAA 61

Query: 130 RVERQELEEIPVAVYEGEGRMKIRGTECAICLGEFESGEGLRIMPKCNHGFHVHCIDAWL 189
           RVERQELE IPVAV+EGEGRM++RGTECAICLGEFESGE LRI+P+CNHGFHVHCIDAWL
Sbjct: 62  RVERQELEAIPVAVFEGEGRMRMRGTECAICLGEFESGEDLRILPQCNHGFHVHCIDAWL 121

Query: 190 VSHSSCPNCRHSLPVKTVADGGSGGVGEVRRAGNDG------SDDIIIILIAAI 238
           VSHSSCPNCRHS+P+KTV DGGSGG+ E+RR GN        SDDIIIILIAAI
Sbjct: 122 VSHSSCPNCRHSVPLKTVGDGGSGGISELRRPGNHRTHTGQLSDDIIIILIAAI 172

[Close]
BLAST of CsGy4G015870 vs. TrEMBL
Match: tr|B9IGS7|B9IGS7_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_016G136200v3 PE=4 SV=2)

HSP 1 Score: 131.0 bits (328), Expect = 3.6e-27
Identity = 72/152 (47.37%), Postives = 88/152 (57.89%), Query Frame = 0 

Query: 89  TTLDNNMVILLAXXXXXXXXXXXMNSILRCIWR-------RWWSAAAAR-----VERQEL 148
           T  D NMVI+LA           +NSI+RC+ R            AAAR     +++++L
Sbjct: 32  TNFDTNMVIILAALLCALIGALGLNSIVRCLLRCSSRFALETTEEAAARLAATGLKKRDL 91

Query: 149 EEIPVAVYEGEGRMKIRGTECAICLGEFESGEGLRIMPKCNHGFHVHCIDAWLVSHSSCP 208
            +IPVA+Y   G   I  TEC ICLGEF  GE +R++PKCNHGFHV CID WL+SHSSCP
Sbjct: 92  RQIPVAIYGAGG--SISATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCP 151

Query: 209 NCRHSLPVKTVADGGSGGVGEVRRAGNDGSDD 229
           NCRHSL   T     SG   EV  A   G +D
Sbjct: 152 NCRHSLLEHTT---DSGAAQEVTGAARPGEND 178

[Close]
BLAST of CsGy4G015870 vs. TrEMBL
Match: tr|F6GXX0|F6GXX0_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_08s0058g01270 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.1e-26
Identity = 70/157 (44.59%), Postives = 90/157 (57.32%), Query Frame = 0 

Query: 84  AFPAHTTLDNNMVILLAXXXXXXXXXXXMNSILRCIWR-------RWWSAAAARVERQEL 143
           A+   T  D NMVI+LA           +NSI+RC  R            AA  ++++ L
Sbjct: 35  AYVNETNFDTNMVIILAALLCALIGALGLNSIVRCAMRCSRRLSPESQGQAATGLKKRAL 94

Query: 144 EEIPVAVYEGEGRMKIRGTECAICLGEFESGEGLRIMPKCNHGFHVHCIDAWLVSHSSCP 203
            +IPVAVY G G ++I  TEC ICLGEF  GE +R++PKCNHGFHV CID WLVSHSSCP
Sbjct: 95  RQIPVAVY-GPG-VEIPATECPICLGEFVQGEKVRVLPKCNHGFHVRCIDTWLVSHSSCP 154

Query: 204 NCRHSLPVKTVADGGSGGVGEVRRAGNDGSDDIIIIL 234
           NCRHSL  +      +G V   +   N  +    I++
Sbjct: 155 NCRHSLLERPTTSDAAGEVAPEQPQPNGSTHQGSIVI 189

[Close]
BLAST of CsGy4G015870 vs. TrEMBL
Match: tr|A0A2C9VA04|A0A2C9VA04_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_09G117400 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 3.1e-26
Identity = 68/142 (47.89%), Postives = 86/142 (60.56%), Query Frame = 0 

Query: 84  AFPAHTTLDNNMVILLAXXXXXXXXXXXMNSILRCIWR-------RWWSAAAAR-----V 143
           ++ + T  D N VI+LA           +NSI+RC  R            AAAR     +
Sbjct: 26  SYISDTNFDTNTVIILAALLCSVIVALGLNSIVRCALRCCRRFAFETPEQAAARLAATGL 85

Query: 144 ERQELEEIPVAVYEGEGRMKIRGTECAICLGEFESGEGLRIMPKCNHGFHVHCIDAWLVS 203
           ++++L +IPVAVY G+G     GTEC ICLGEF  GE +R++PKCNHGFHV CID WL+S
Sbjct: 86  KKRDLSQIPVAVY-GKGVNNFPGTECPICLGEFADGEKVRVLPKCNHGFHVRCIDTWLLS 145

Query: 204 HSSCPNCRHSLPVKTVADGGSG 214
           HSSCPNCR SL   T A  G+G
Sbjct: 146 HSSCPNCRLSLLEHTAAGSGAG 166

The following BLAST results are available for this feature:
BLAST of CsGy4G015870 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011653722.13.9e-8198.16PREDICTED: RING-H2 finger protein ATL74 [Cucumis sativus] >KGN54449.1 hypothetic... [more]
XP_008463261.12.4e-6270.69PREDICTED: RING-H2 finger protein ATL74 [Cucumis melo][more]
XP_022144089.14.3e-4055.31RING-H2 finger protein ATL74-like [Momordica charantia][more]
XP_022157309.18.5e-2850.78RING-H2 finger protein ATL74-like [Momordica charantia][more]
XP_002323073.25.5e-2747.37RING-H2 finger protein ATL74 [Populus trichocarpa] >PNS99442.1 hypothetical prot... [more]
BLAST of CsGy4G015870 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G01880.12.2e-2563.64RING/U-box superfamily protein[more]
AT3G10910.14.1e-2459.74RING/U-box superfamily protein[more]
AT5G05280.18.5e-2253.41RING/U-box superfamily protein[more]
AT1G49210.14.2e-2136.50RING/U-box superfamily protein[more]
AT1G20823.11.2e-2041.67RING/U-box superfamily protein[more]
BLAST of CsGy4G015870 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9LZV8|ATL74_ARATH3.9e-2463.64RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1[more]
sp|Q9SG96|ATL72_ARATH7.3e-2359.74RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1[more]
sp|Q9FLC6|ATL73_ARATH1.5e-2053.41RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1[more]
sp|Q6NML0|ATL76_ARATH7.6e-2036.50E3 ubiquitin-protein ligase ATL76 OS=Arabidopsis thaliana OX=3702 GN=ATL76 PE=1 ... [more]
sp|Q9LM69|ATL80_ARATH2.2e-1941.67RING-H2 finger protein ATL80 OS=Arabidopsis thaliana OX=3702 GN=ATL80 PE=2 SV=1[more]
BLAST of CsGy4G015870 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L057|A0A0A0L057_CUCSA2.6e-8198.16Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G333870 PE=4 SV=1[more]
tr|A0A1S3CKD5|A0A1S3CKD5_CUCME1.6e-6270.69RING-H2 finger protein ATL74 OS=Cucumis melo OX=3656 GN=LOC103501464 PE=4 SV=1[more]
tr|B9IGS7|B9IGS7_POPTR3.6e-2747.37Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_016G136200v3 PE=... [more]
tr|F6GXX0|F6GXX0_VITVI1.1e-2644.59Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_08s0058g01270 PE=4 SV=... [more]
tr|A0A2C9VA04|A0A2C9VA04_MANES3.1e-2647.89Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_09G117400 PE=4 SV=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0044267 cellular protein metabolic process
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy4G015870.1CsGy4G015870.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 157..198
e-value: 1.9E-6
score: 37.4
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 156..199
e-value: 2.4E-14
score: 53.3
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 157..199
score: 11.958
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 121..205
e-value: 6.0E-21
score: 75.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 12..55
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 14..39
NoneNo IPR availablePANTHERPTHR14155:SF209RING-H2 FINGER PROTEIN ATL72-RELATEDcoord: 86..205
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 86..205
NoneNo IPR availableCDDcd16461RING-H2_EL5_likecoord: 156..199
e-value: 8.03804E-17
score: 70.8019
NoneNo IPR availableSUPERFAMILYSSF57850RING/U-boxcoord: 156..205

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy4G015870Cla018046Watermelon (97103) v1cgybwmB270
CsGy4G015870Csa3G728120Cucumber (Chinese Long) v2cgybcuB162
CsGy4G015870Csa6G014550Cucumber (Chinese Long) v2cgybcuB184
CsGy4G015870MELO3C020006Melon (DHL92) v3.5.1cgybmeB247
CsGy4G015870MELO3C025221Melon (DHL92) v3.5.1cgybmeB284
CsGy4G015870MELO3C009107Melon (DHL92) v3.5.1cgybmeB248
CsGy4G015870ClCG11G005680Watermelon (Charleston Gray)cgybwcgB262
CsGy4G015870ClCG10G022690Watermelon (Charleston Gray)cgybwcgB252
CsGy4G015870CSPI04G16550Wild cucumber (PI 183967)cgybcpiB170
CsGy4G015870CSPI06G02140Wild cucumber (PI 183967)cgybcpiB187
CsGy4G015870CSPI03G30670Wild cucumber (PI 183967)cgybcpiB165
CsGy4G015870CmaCh15G001660Cucurbita maxima (Rimu)cgybcmaB490
CsGy4G015870CmaCh04G028640Cucurbita maxima (Rimu)cgybcmaB550
CsGy4G015870CmoCh04G029930Cucurbita moschata (Rifu)cgybcmoB525
CsGy4G015870CmoCh15G001790Cucurbita moschata (Rifu)cgybcmoB461
CsGy4G015870Lsi03G002640Bottle gourd (USVL1VR-Ls)cgyblsiB262
CsGy4G015870Lsi03G022760Bottle gourd (USVL1VR-Ls)cgyblsiB258
CsGy4G015870Cp4.1LG08g12450Cucurbita pepo (Zucchini)cgybcpeB576
CsGy4G015870Cp4.1LG13g07520Cucurbita pepo (Zucchini)cgybcpeB483
CsGy4G015870MELO3C009107.2Melon (DHL92) v3.6.1cgybmedB246
CsGy4G015870MELO3C025221.2Melon (DHL92) v3.6.1cgybmedB284
CsGy4G015870CsaV3_4G027170Cucumber (Chinese Long) v3cgybcucB171
CsGy4G015870CsaV3_6G002290Cucumber (Chinese Long) v3cgybcucB189
CsGy4G015870Cla97C10G206100Watermelon (97103) v2cgybwmbB260
CsGy4G015870Cla97C11G212610Watermelon (97103) v2cgybwmbB271
CsGy4G015870Bhi04G001836Wax gourdcgybwgoB370
CsGy4G015870Bhi11G001453Wax gourdcgybwgoB348
CsGy4G015870Carg01139Silver-seed gourdcarcgybB0172
CsGy4G015870Carg05940Silver-seed gourdcarcgybB0019
CsGy4G015870Carg02157Silver-seed gourdcarcgybB0277
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CsGy4G015870CsGy6G002220Cucumber (Gy14) v2cgybcgybB130
The following block(s) are covering this gene:
GeneOrganismBlock
CsGy4G015870Cucumber (Gy14) v2cgybcgybB083
CsGy4G015870Cucurbita maxima (Rimu)cgybcmaB488
CsGy4G015870Cucurbita maxima (Rimu)cgybcmaB509
CsGy4G015870Cucurbita maxima (Rimu)cgybcmaB533
CsGy4G015870Cucurbita maxima (Rimu)cgybcmaB561
CsGy4G015870Cucurbita maxima (Rimu)cgybcmaB567
CsGy4G015870Cucurbita moschata (Rifu)cgybcmoB480
CsGy4G015870Cucurbita moschata (Rifu)cgybcmoB507
CsGy4G015870Cucurbita moschata (Rifu)cgybcmoB536
CsGy4G015870Cucurbita moschata (Rifu)cgybcmoB541
CsGy4G015870Cucurbita pepo (Zucchini)cgybcpeB463
CsGy4G015870Cucurbita pepo (Zucchini)cgybcpeB514
CsGy4G015870Cucurbita pepo (Zucchini)cgybcpeB520
CsGy4G015870Cucurbita pepo (Zucchini)cgybcpeB555
CsGy4G015870Cucumber (Chinese Long) v2cgybcuB167
CsGy4G015870Bottle gourd (USVL1VR-Ls)cgyblsiB236
CsGy4G015870Watermelon (Charleston Gray)cgybwcgB282
CsGy4G015870Watermelon (97103) v1cgybwmB314
CsGy4G015870Silver-seed gourdcarcgybB0298
CsGy4G015870Silver-seed gourdcarcgybB0626
CsGy4G015870Silver-seed gourdcarcgybB0985
CsGy4G015870Cucumber (Chinese Long) v3cgybcucB169
CsGy4G015870Watermelon (97103) v2cgybwmbB282
CsGy4G015870Wax gourdcgybwgoB374