Lsi03G002640 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi03G002640
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionRing finger protein, putative
Locationchr03 : 3265401 .. 3266009 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGATGGAGTCCAATCACCACCGTCCCCGTCCCCACCGCCTCCTCCTCGACGAGACGACGGCGGCACCGTCGAATGGAAGCAGCAGAACGCGAAATTCATATAGCACCGAAGCCAATTTTGACACGAACATGGTGATAATTCTTGCTGCCTTACTCTGCGCGTTGATTTGCGCTCTAGGACTAAACTCGATTGTCCGGTGCGCCCTCCGCTGCAGCCGGCGGTTCGCCTTCGAGACAGGCGGCGGAACAGCCTCGCGCCTCACCGCTACAGGGTTAAAGAAAAGCGCATTACGCCAAATTCCAGTCGCCGTATACGGTTCGGAATCGGGTCTAGAGATCCGAGAAACGGATTGCCCTATCTGCCTTGGAGATTTCACCGCCGGAGAGAAAATCAAAGTACTCCCTAAATGTAACCACGGATTTCACGTTCGATGTATCGATACCTGGTTAGCTTCCCACTCGTCATGTCCGACGTGTCGTCAATCACTGCTCGAACAACAGTCGGCTTCTGAATCAGCTGCAGCTGAAGCCGGAAATCGACCCGCCGGAAATTCATCGGCTAGCGGCCAAGGTGAGATCTCGATAACTGTAGATGAAATTACCTGA

mRNA sequence

ATGGCGATGGAGTCCAATCACCACCGTCCCCGTCCCCACCGCCTCCTCCTCGACGAGACGACGGCGGCACCGTCGAATGGAAGCAGCAGAACGCGAAATTCATATAGCACCGAAGCCAATTTTGACACGAACATGGTGATAATTCTTGCTGCCTTACTCTGCGCGTTGATTTGCGCTCTAGGACTAAACTCGATTGTCCGGTGCGCCCTCCGCTGCAGCCGGCGGTTCGCCTTCGAGACAGGCGGCGGAACAGCCTCGCGCCTCACCGCTACAGGGTTAAAGAAAAGCGCATTACGCCAAATTCCAGTCGCCGTATACGGTTCGGAATCGGGTCTAGAGATCCGAGAAACGGATTGCCCTATCTGCCTTGGAGATTTCACCGCCGGAGAGAAAATCAAAGTACTCCCTAAATGTAACCACGGATTTCACGTTCGATGTATCGATACCTGGTTAGCTTCCCACTCGTCATGTCCGACGTGTCGTCAATCACTGCTCGAACAACAGTCGGCTTCTGAATCAGCTGCAGCTGAAGCCGGAAATCGACCCGCCGGAAATTCATCGGCTAGCGGCCAAGGTGAGATCTCGATAACTGTAGATGAAATTACCTGA

Coding sequence (CDS)

ATGGCGATGGAGTCCAATCACCACCGTCCCCGTCCCCACCGCCTCCTCCTCGACGAGACGACGGCGGCACCGTCGAATGGAAGCAGCAGAACGCGAAATTCATATAGCACCGAAGCCAATTTTGACACGAACATGGTGATAATTCTTGCTGCCTTACTCTGCGCGTTGATTTGCGCTCTAGGACTAAACTCGATTGTCCGGTGCGCCCTCCGCTGCAGCCGGCGGTTCGCCTTCGAGACAGGCGGCGGAACAGCCTCGCGCCTCACCGCTACAGGGTTAAAGAAAAGCGCATTACGCCAAATTCCAGTCGCCGTATACGGTTCGGAATCGGGTCTAGAGATCCGAGAAACGGATTGCCCTATCTGCCTTGGAGATTTCACCGCCGGAGAGAAAATCAAAGTACTCCCTAAATGTAACCACGGATTTCACGTTCGATGTATCGATACCTGGTTAGCTTCCCACTCGTCATGTCCGACGTGTCGTCAATCACTGCTCGAACAACAGTCGGCTTCTGAATCAGCTGCAGCTGAAGCCGGAAATCGACCCGCCGGAAATTCATCGGCTAGCGGCCAAGGTGAGATCTCGATAACTGTAGATGAAATTACCTGA

Protein sequence

MAMESNHHRPRPHRLLLDETTAAPSNGSSRTRNSYSTEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSESGLEIRETDCPICLGDFTAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSASESAAAEAGNRPAGNSSASGQGEISITVDEIT
Homology
[Close]
BLAST of Lsi03G002640 vs. Swiss-Prot
Match: ATL72_ARATH (RING-H2 finger protein ATL72 OS=Arabidopsis thaliana GN=ATL72 PE=2 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.7e-44
Identity = 96/163 (58.90%), Postives = 116/163 (71.17%), Query Frame = 1 

Query: 14  RLLLDETTAAPSNGSSRTRNSYSTEANFDTNMVIILAALLCALICALGLNSIVRCALRCS 73
           RLLL+    AP+N + + +   + +  FDTNMVIILAALLCALICAL LNS +RC LR +
Sbjct: 3   RLLLEPQANAPANANPKPKGGIN-DTYFDTNMVIILAALLCALICALSLNSALRCVLRIT 62

Query: 74  RRFAFETGGGTASRLTA--------TGLKKSALRQIPVAVYGSESGLEIRETDCPICLGD 133
           RRF  +     AS   A        TGLKK AL+QIPV +YGS   ++++ T+C ICLGD
Sbjct: 63  RRFTSDDQVSNASNANANLGRLAAATGLKKQALKQIPVGLYGSGI-IDMKATECLICLGD 122

Query: 134 FTAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQ 169
           F  GEK++VLPKCNHGFHVRCIDTWL S SSCPTCRQSLL +Q
Sbjct: 123 FEDGEKVRVLPKCNHGFHVRCIDTWLLSRSSCPTCRQSLLLEQ 163

[Close]
BLAST of Lsi03G002640 vs. Swiss-Prot
Match: ATL73_ARATH (RING-H2 finger protein ATL73 OS=Arabidopsis thaliana GN=ATL73 PE=2 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.3e-41
Identity = 84/136 (61.76%), Postives = 103/136 (75.74%), Query Frame = 1 

Query: 39  ANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFETGGGTASRLTATGLKKSAL 98
           A+ DT+MVIILAALLCALICALG+NS++RC LRC+RRF         +   A G+KK AL
Sbjct: 35  ASMDTHMVIILAALLCALICALGINSVLRCVLRCTRRFTPNEDPVDTNANVAKGIKKRAL 94

Query: 99  RQIPVAVYGSESGLEIRETDCPICLGDFTAGEKIKVLPKCNHGFHVRCIDTWLASHSSCP 158
           + IPV  Y  E  L+++ T+C ICLGDF  GE ++VLPKCNHGFHV+CIDTWL SHSSCP
Sbjct: 95  KVIPVDSYSPE--LKMKATECLICLGDFVEGETVRVLPKCNHGFHVKCIDTWLLSHSSCP 154

Query: 159 TCRQSLLEQQSASESA 175
           TCRQSLLE Q+ +  +
Sbjct: 155 TCRQSLLEHQTPANGS 168

[Close]
BLAST of Lsi03G002640 vs. Swiss-Prot
Match: ATL74_ARATH (RING-H2 finger protein ATL74 OS=Arabidopsis thaliana GN=ATL74 PE=2 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 5.5e-40
Identity = 84/154 (54.55%), Postives = 103/154 (66.88%), Query Frame = 1 

Query: 13  HRLLLDETTAAPSNGSSRTRNSYSTEANFDTNMVIILAALLCALICALGLNSIVRCALRC 72
           HRLLL+          S   + Y+ + NFD NMVIILAALLCALI ALGLNSI+RCA+RC
Sbjct: 2   HRLLLESHGGGNETSGSGGGDGYTRDMNFDANMVIILAALLCALILALGLNSILRCAMRC 61

Query: 73  SRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSESGLEIRETDCPICLGDFTAGEKI 132
               +     GT +     GLKK  L++ PVA YGS   ++I  T+C ICLG+F  GE++
Sbjct: 62  GFGLSSSAAAGTVA--DRAGLKKRELKKFPVAEYGSGE-VKIAATECAICLGEFADGERV 121

Query: 133 KVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLE 167
           +VLP CNH FH+ CIDTWL SHSSCP CR SL+E
Sbjct: 122 RVLPPCNHSFHMSCIDTWLVSHSSCPNCRHSLIE 152

[Close]
BLAST of Lsi03G002640 vs. Swiss-Prot
Match: ATL78_ARATH (RING-H2 finger protein ATL78 OS=Arabidopsis thaliana GN=ATL78 PE=2 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 2.0e-37
Identity = 73/133 (54.89%), Postives = 95/133 (71.43%), Query Frame = 1 

Query: 35  YSTEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFETGGGTAS-RLTATGL 94
           Y  + NFD N+V++L+ LLCAL+C+LGLNSI+RCALRCS     E GG     RLT TG+
Sbjct: 46  YVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALRCSNLVPSEAGGDNYPVRLTNTGV 105

Query: 95  KKSALRQIPVAVYGSESGLEIRETDCPICLGDFTAGEKIKVLPKCNHGFHVRCIDTWLAS 154
           K+ AL+      Y +E  L   +T+C ICL +F A E++K+LP C+HGFHVRCID WL+S
Sbjct: 106 KRKALKSFQTVSYSTELNLPGLDTECAICLSEFVAEERVKLLPTCHHGFHVRCIDKWLSS 165

Query: 155 HSSCPTCRQSLLE 167
           HSSCPTCR  L++
Sbjct: 166 HSSCPTCRHCLIQ 178

[Close]
BLAST of Lsi03G002640 vs. Swiss-Prot
Match: ATL10_ARATH (RING-H2 finger protein ATL10 OS=Arabidopsis thaliana GN=ATL10 PE=2 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 6.8e-30
Identity = 63/132 (47.73%), Postives = 84/132 (63.64%), Query Frame = 1 

Query: 38  EANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFETGGGTASRLTAT---GLK 97
           E N   N++++L+ L+C +IC LGL+ I+RCALR S RF       + S    +   G+K
Sbjct: 51  ENNLSGNVMMLLSILICGIICCLGLHYIIRCALRRSTRFMISEPVPSLSSTRGSSNKGIK 110

Query: 98  KSALRQIPVAVYGSESGLEIRETDCPICLGDFTAGEKIKVLPKCNHGFHVRCIDTWLASH 157
           K ALR  PV  Y  E  L   + +C ICL DF +GE++++LPKCNHGFHVRCID WL  H
Sbjct: 111 KKALRMFPVVSYSPEMNLPGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQQH 170

Query: 158 SSCPTCRQSLLE 167
            +CP CR  L+E
Sbjct: 171 LTCPKCRNCLVE 182

[Close]
BLAST of Lsi03G002640 vs. TrEMBL
Match: A0A0A0KAH2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014550 PE=4 SV=1)

HSP 1 Score: 358.2 bits (918), Expect = 6.5e-96
Identity = 183/202 (90.59%), Postives = 187/202 (92.57%), Query Frame = 1 

Query: 1   MAMESNHHRPRPHRLLLDETTAAPSNGSSRTRNSYSTEANFDTNMVIILAALLCALICAL 60
           M MESNHHRPRP RLLLD  T AP +  SRTRNSY+ EANFDTNMVIILAALLCALICAL
Sbjct: 1   MRMESNHHRPRPPRLLLDPDTTAPPSNGSRTRNSYNNEANFDTNMVIILAALLCALICAL 60

Query: 61  GLNSIVRCALRCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSESGLEIRETDCP 120
           GLNSIVRCALRCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSE+GLEIRETDCP
Sbjct: 61  GLNSIVRCALRCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSETGLEIRETDCP 120

Query: 121 ICLGDFTAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSASESAAAEAGN 180
           ICLGDF AGEKIK+LPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQS SESA  EAGN
Sbjct: 121 ICLGDFMAGEKIKILPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSVSESAVTEAGN 180

Query: 181 RPAGNSSASGQGEISITVDEIT 203
           R AGNSSASGQGEISITVD IT
Sbjct: 181 RGAGNSSASGQGEISITVDGIT 202

[Close]
BLAST of Lsi03G002640 vs. TrEMBL
Match: A0A061FT40_THECC (RING/U-box superfamily protein OS=Theobroma cacao GN=TCM_045522 PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 1.6e-65
Identity = 137/196 (69.90%), Postives = 163/196 (83.16%), Query Frame = 1 

Query: 8   HRPRPHRLLLD-ETTAAPSNGSSRTRNSYSTEANFDTNMVIILAALLCALICALGLNSIV 67
           H   PHRLLLD +++A+P+NG+ RTR+S+S EANFDTNMVIILAALLCALICALGLNSIV
Sbjct: 4   HYHSPHRLLLDTQSSASPTNGN-RTRSSFSNEANFDTNMVIILAALLCALICALGLNSIV 63

Query: 68  RCALRCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSESGLEIRETDCPICLGDF 127
           RCALRCSRRFAFET   TA+RL ATGLKK ALRQIPVA+Y   SG+ I+ TDCPICLG+F
Sbjct: 64  RCALRCSRRFAFETPDETAARLAATGLKKRALRQIPVAIY--SSGINIKATDCPICLGEF 123

Query: 128 TAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSASESAA-AEAGNRPAGN 187
             GE+++VLPKC+HGFHVRCIDTWL SHSSCPTCRQSLLEQ ++S++ A  EAG +  GN
Sbjct: 124 IDGERVRVLPKCHHGFHVRCIDTWLLSHSSCPTCRQSLLEQPTSSDAGAEMEAGVQQHGN 183

Query: 188 SSASGQGEISITVDEI 202
            S  GQ ++ +  DE+
Sbjct: 184 -SPGGQFDVPVAADEV 195

[Close]
BLAST of Lsi03G002640 vs. TrEMBL
Match: A0A067DIY0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029206mg PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 5.9e-65
Identity = 131/191 (68.59%), Postives = 153/191 (80.10%), Query Frame = 1 

Query: 11  RPHRLLLDETTAAPSNGSSRTRNSYSTEANFDTNMVIILAALLCALICALGLNSIVRCAL 70
           RPHRLLLD   + P    SRTR++ S EANFDTNMVIILAALLCALICALGLNSIVRCAL
Sbjct: 7   RPHRLLLDTEPSTPPTNGSRTRSTVSNEANFDTNMVIILAALLCALICALGLNSIVRCAL 66

Query: 71  RCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSESGLEIRETDCPICLGDFTAGE 130
           RCSRRFAFET   TA+RL A GLKKSALRQIPVAVYG+ +G++I+ TDC ICL DF  GE
Sbjct: 67  RCSRRFAFETPNETAARLAARGLKKSALRQIPVAVYGA-AGVKIKATDCAICLVDFMDGE 126

Query: 131 KIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSASESAAAEAGNRPAGNSSASG 190
           K++VLPKCNHGFHVRCIDTWL SHSSCPTCR+SLL+Q ++S++A  ++  R  GN     
Sbjct: 127 KVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLDQPTSSDAAEMDSEIRHPGNPPGGE 186

Query: 191 QGEISITVDEI 202
           Q ++ I  DE+
Sbjct: 187 QADVPIATDEV 196

[Close]
BLAST of Lsi03G002640 vs. TrEMBL
Match: V4THI3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032803mg PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 5.9e-65
Identity = 131/191 (68.59%), Postives = 153/191 (80.10%), Query Frame = 1 

Query: 11  RPHRLLLDETTAAPSNGSSRTRNSYSTEANFDTNMVIILAALLCALICALGLNSIVRCAL 70
           RPHRLLLD   + P    SRTR++ S EANFDTNMVIILAALLCALICALGLNSIVRCAL
Sbjct: 7   RPHRLLLDTEPSTPPTNGSRTRSTVSNEANFDTNMVIILAALLCALICALGLNSIVRCAL 66

Query: 71  RCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSESGLEIRETDCPICLGDFTAGE 130
           RCSRRFAFET   TA+RL A GLKKSALRQIPVAVYG+ +G++I+ TDC ICL DF  GE
Sbjct: 67  RCSRRFAFETPDETAARLAARGLKKSALRQIPVAVYGT-AGVKIKATDCAICLVDFMDGE 126

Query: 131 KIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSASESAAAEAGNRPAGNSSASG 190
           K++VLPKCNHGFHVRCIDTWL SHSSCPTCR+SLL+Q ++S++A  ++  R  GN     
Sbjct: 127 KVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLDQPTSSDAAEVDSEIRHPGNPPGGE 186

Query: 191 QGEISITVDEI 202
           Q ++ I  DE+
Sbjct: 187 QADVPIATDEV 196

[Close]
BLAST of Lsi03G002640 vs. TrEMBL
Match: M5X121_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011446mg PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 1.1e-63
Identity = 139/213 (65.26%), Postives = 158/213 (74.18%), Query Frame = 1 

Query: 3   MESNHHRPRPHRLLLD--------------ETTAAPSNGSSRTRNSYSTEANFDTNMVII 62
           M + HHRP  HRLLLD               TT  P+NGS RTR +Y+ EANFDTNMVII
Sbjct: 1   MVTLHHRP--HRLLLDPSGSSSSSSSSSSSSTTPDPANGS-RTRGTYTNEANFDTNMVII 60

Query: 63  LAALLCALICALGLNSIVRCALRCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGS 122
           LAALLCALI ALGLNSIVRCALRCSRRF+FET   TA+RL ATGLKKS LRQIP+  YG 
Sbjct: 61  LAALLCALIFALGLNSIVRCALRCSRRFSFETPDETAARLAATGLKKSTLRQIPIVAYG- 120

Query: 123 ESGLEIRETDCPICLGDFTAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQ- 182
            SG  I  TDCPICLG+F  G+K+++LPKCNHGFHVRCIDTW  SHSSCPTCR SLLEQ 
Sbjct: 121 -SGANIPATDCPICLGEFQDGQKVRLLPKCNHGFHVRCIDTWFLSHSSCPTCRHSLLEQP 180

Query: 183 QSASESAAAEAGNRPAGNSSASGQGEISITVDE 201
            +AS+SA        AGN+S+ GQG++ I+VDE
Sbjct: 181 AAASDSAEVADARHTAGNASSGGQGDVPISVDE 208

[Close]
BLAST of Lsi03G002640 vs. TAIR10
Match: AT3G10910.1 (AT3G10910.1 RING/U-box superfamily protein)

HSP 1 Score: 180.6 bits (457), Expect = 9.4e-46
Identity = 96/163 (58.90%), Postives = 116/163 (71.17%), Query Frame = 1 

Query: 14  RLLLDETTAAPSNGSSRTRNSYSTEANFDTNMVIILAALLCALICALGLNSIVRCALRCS 73
           RLLL+    AP+N + + +   + +  FDTNMVIILAALLCALICAL LNS +RC LR +
Sbjct: 3   RLLLEPQANAPANANPKPKGGIN-DTYFDTNMVIILAALLCALICALSLNSALRCVLRIT 62

Query: 74  RRFAFETGGGTASRLTA--------TGLKKSALRQIPVAVYGSESGLEIRETDCPICLGD 133
           RRF  +     AS   A        TGLKK AL+QIPV +YGS   ++++ T+C ICLGD
Sbjct: 63  RRFTSDDQVSNASNANANLGRLAAATGLKKQALKQIPVGLYGSGI-IDMKATECLICLGD 122

Query: 134 FTAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQ 169
           F  GEK++VLPKCNHGFHVRCIDTWL S SSCPTCRQSLL +Q
Sbjct: 123 FEDGEKVRVLPKCNHGFHVRCIDTWLLSRSSCPTCRQSLLLEQ 163

[Close]
BLAST of Lsi03G002640 vs. TAIR10
Match: AT5G05280.1 (AT5G05280.1 RING/U-box superfamily protein)

HSP 1 Score: 171.0 bits (432), Expect = 7.4e-43
Identity = 84/136 (61.76%), Postives = 103/136 (75.74%), Query Frame = 1 

Query: 39  ANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFETGGGTASRLTATGLKKSAL 98
           A+ DT+MVIILAALLCALICALG+NS++RC LRC+RRF         +   A G+KK AL
Sbjct: 35  ASMDTHMVIILAALLCALICALGINSVLRCVLRCTRRFTPNEDPVDTNANVAKGIKKRAL 94

Query: 99  RQIPVAVYGSESGLEIRETDCPICLGDFTAGEKIKVLPKCNHGFHVRCIDTWLASHSSCP 158
           + IPV  Y  E  L+++ T+C ICLGDF  GE ++VLPKCNHGFHV+CIDTWL SHSSCP
Sbjct: 95  KVIPVDSYSPE--LKMKATECLICLGDFVEGETVRVLPKCNHGFHVKCIDTWLLSHSSCP 154

Query: 159 TCRQSLLEQQSASESA 175
           TCRQSLLE Q+ +  +
Sbjct: 155 TCRQSLLEHQTPANGS 168

[Close]
BLAST of Lsi03G002640 vs. TAIR10
Match: AT5G01880.1 (AT5G01880.1 RING/U-box superfamily protein)

HSP 1 Score: 165.6 bits (418), Expect = 3.1e-41
Identity = 84/154 (54.55%), Postives = 103/154 (66.88%), Query Frame = 1 

Query: 13  HRLLLDETTAAPSNGSSRTRNSYSTEANFDTNMVIILAALLCALICALGLNSIVRCALRC 72
           HRLLL+          S   + Y+ + NFD NMVIILAALLCALI ALGLNSI+RCA+RC
Sbjct: 2   HRLLLESHGGGNETSGSGGGDGYTRDMNFDANMVIILAALLCALILALGLNSILRCAMRC 61

Query: 73  SRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSESGLEIRETDCPICLGDFTAGEKI 132
               +     GT +     GLKK  L++ PVA YGS   ++I  T+C ICLG+F  GE++
Sbjct: 62  GFGLSSSAAAGTVA--DRAGLKKRELKKFPVAEYGSGE-VKIAATECAICLGEFADGERV 121

Query: 133 KVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLE 167
           +VLP CNH FH+ CIDTWL SHSSCP CR SL+E
Sbjct: 122 RVLPPCNHSFHMSCIDTWLVSHSSCPNCRHSLIE 152

[Close]
BLAST of Lsi03G002640 vs. TAIR10
Match: AT1G49230.1 (AT1G49230.1 RING/U-box superfamily protein)

HSP 1 Score: 157.1 bits (396), Expect = 1.1e-38
Identity = 73/133 (54.89%), Postives = 95/133 (71.43%), Query Frame = 1 

Query: 35  YSTEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFETGGGTAS-RLTATGL 94
           Y  + NFD N+V++L+ LLCAL+C+LGLNSI+RCALRCS     E GG     RLT TG+
Sbjct: 46  YVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALRCSNLVPSEAGGDNYPVRLTNTGV 105

Query: 95  KKSALRQIPVAVYGSESGLEIRETDCPICLGDFTAGEKIKVLPKCNHGFHVRCIDTWLAS 154
           K+ AL+      Y +E  L   +T+C ICL +F A E++K+LP C+HGFHVRCID WL+S
Sbjct: 106 KRKALKSFQTVSYSTELNLPGLDTECAICLSEFVAEERVKLLPTCHHGFHVRCIDKWLSS 165

Query: 155 HSSCPTCRQSLLE 167
           HSSCPTCR  L++
Sbjct: 166 HSSCPTCRHCLIQ 178

[Close]
BLAST of Lsi03G002640 vs. TAIR10
Match: AT1G49220.1 (AT1G49220.1 RING/U-box superfamily protein)

HSP 1 Score: 132.1 bits (331), Expect = 3.8e-31
Identity = 63/132 (47.73%), Postives = 84/132 (63.64%), Query Frame = 1 

Query: 38  EANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFETGGGTASRLTAT---GLK 97
           E N   N++++L+ L+C +IC LGL+ I+RCALR S RF       + S    +   G+K
Sbjct: 51  ENNLSGNVMMLLSILICGIICCLGLHYIIRCALRRSTRFMISEPVPSLSSTRGSSNKGIK 110

Query: 98  KSALRQIPVAVYGSESGLEIRETDCPICLGDFTAGEKIKVLPKCNHGFHVRCIDTWLASH 157
           K ALR  PV  Y  E  L   + +C ICL DF +GE++++LPKCNHGFHVRCID WL  H
Sbjct: 111 KKALRMFPVVSYSPEMNLPGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQQH 170

Query: 158 SSCPTCRQSLLE 167
            +CP CR  L+E
Sbjct: 171 LTCPKCRNCLVE 182

[Close]
BLAST of Lsi03G002640 vs. NCBI nr
Match: gi|659113829|ref|XP_008456776.1| (PREDICTED: RING-H2 finger protein ATL74 [Cucumis melo])

HSP 1 Score: 366.7 bits (940), Expect = 2.6e-98
Identity = 190/203 (93.60%), Postives = 195/203 (96.06%), Query Frame = 1 

Query: 1   MAMESNHHRPRPHRLLLD-ETTAAPSNGSSRTRNSYSTEANFDTNMVIILAALLCALICA 60
           M MESNHHRPR HRLLLD +TTAAPSNG SRTRNSY+ EANFDTNMVIILAALLCALICA
Sbjct: 1   MTMESNHHRPRSHRLLLDADTTAAPSNG-SRTRNSYNNEANFDTNMVIILAALLCALICA 60

Query: 61  LGLNSIVRCALRCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSESGLEIRETDC 120
           LGLNSIVRCALRCSRRFAFETGGGTASRLTA+GLKKSALRQIPVAVYGSE+GLEIRETDC
Sbjct: 61  LGLNSIVRCALRCSRRFAFETGGGTASRLTASGLKKSALRQIPVAVYGSETGLEIRETDC 120

Query: 121 PICLGDFTAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSASESAAAEAG 180
           PICLGDF AGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSL+EQQS SESA AEAG
Sbjct: 121 PICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLVEQQSVSESAGAEAG 180

Query: 181 NRPAGNSSASGQGEISITVDEIT 203
           NRPAGNSSASGQGEISITVDEIT
Sbjct: 181 NRPAGNSSASGQGEISITVDEIT 202

[Close]
BLAST of Lsi03G002640 vs. NCBI nr
Match: gi|700190630|gb|KGN45834.1| (hypothetical protein Csa_6G014550 [Cucumis sativus])

HSP 1 Score: 358.2 bits (918), Expect = 9.3e-96
Identity = 183/202 (90.59%), Postives = 187/202 (92.57%), Query Frame = 1 

Query: 1   MAMESNHHRPRPHRLLLDETTAAPSNGSSRTRNSYSTEANFDTNMVIILAALLCALICAL 60
           M MESNHHRPRP RLLLD  T AP +  SRTRNSY+ EANFDTNMVIILAALLCALICAL
Sbjct: 1   MRMESNHHRPRPPRLLLDPDTTAPPSNGSRTRNSYNNEANFDTNMVIILAALLCALICAL 60

Query: 61  GLNSIVRCALRCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSESGLEIRETDCP 120
           GLNSIVRCALRCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSE+GLEIRETDCP
Sbjct: 61  GLNSIVRCALRCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSETGLEIRETDCP 120

Query: 121 ICLGDFTAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSASESAAAEAGN 180
           ICLGDF AGEKIK+LPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQS SESA  EAGN
Sbjct: 121 ICLGDFMAGEKIKILPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSVSESAVTEAGN 180

Query: 181 RPAGNSSASGQGEISITVDEIT 203
           R AGNSSASGQGEISITVD IT
Sbjct: 181 RGAGNSSASGQGEISITVDGIT 202

[Close]
BLAST of Lsi03G002640 vs. NCBI nr
Match: gi|778709680|ref|XP_011656436.1| (PREDICTED: RING-H2 finger protein ATL72 [Cucumis sativus])

HSP 1 Score: 342.8 bits (878), Expect = 4.0e-91
Identity = 174/192 (90.62%), Postives = 178/192 (92.71%), Query Frame = 1 

Query: 1   MAMESNHHRPRPHRLLLDETTAAPSNGSSRTRNSYSTEANFDTNMVIILAALLCALICAL 60
           M MESNHHRPRP RLLLD  T AP +  SRTRNSY+ EANFDTNMVIILAALLCALICAL
Sbjct: 1   MRMESNHHRPRPPRLLLDPDTTAPPSNGSRTRNSYNNEANFDTNMVIILAALLCALICAL 60

Query: 61  GLNSIVRCALRCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSESGLEIRETDCP 120
           GLNSIVRCALRCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSE+GLEIRETDCP
Sbjct: 61  GLNSIVRCALRCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSETGLEIRETDCP 120

Query: 121 ICLGDFTAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSASESAAAEAGN 180
           ICLGDF AGEKIK+LPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQS SESA  EAGN
Sbjct: 121 ICLGDFMAGEKIKILPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSVSESAVTEAGN 180

Query: 181 RPAGNSSASGQG 193
           R AGNSSASGQG
Sbjct: 181 RGAGNSSASGQG 192

[Close]
BLAST of Lsi03G002640 vs. NCBI nr
Match: gi|590570340|ref|XP_007011313.1| (RING/U-box superfamily protein [Theobroma cacao])

HSP 1 Score: 257.3 bits (656), Expect = 2.2e-65
Identity = 137/196 (69.90%), Postives = 163/196 (83.16%), Query Frame = 1 

Query: 8   HRPRPHRLLLD-ETTAAPSNGSSRTRNSYSTEANFDTNMVIILAALLCALICALGLNSIV 67
           H   PHRLLLD +++A+P+NG+ RTR+S+S EANFDTNMVIILAALLCALICALGLNSIV
Sbjct: 4   HYHSPHRLLLDTQSSASPTNGN-RTRSSFSNEANFDTNMVIILAALLCALICALGLNSIV 63

Query: 68  RCALRCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSESGLEIRETDCPICLGDF 127
           RCALRCSRRFAFET   TA+RL ATGLKK ALRQIPVA+Y   SG+ I+ TDCPICLG+F
Sbjct: 64  RCALRCSRRFAFETPDETAARLAATGLKKRALRQIPVAIY--SSGINIKATDCPICLGEF 123

Query: 128 TAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSASESAA-AEAGNRPAGN 187
             GE+++VLPKC+HGFHVRCIDTWL SHSSCPTCRQSLLEQ ++S++ A  EAG +  GN
Sbjct: 124 IDGERVRVLPKCHHGFHVRCIDTWLLSHSSCPTCRQSLLEQPTSSDAGAEMEAGVQQHGN 183

Query: 188 SSASGQGEISITVDEI 202
            S  GQ ++ +  DE+
Sbjct: 184 -SPGGQFDVPVAADEV 195

[Close]
BLAST of Lsi03G002640 vs. NCBI nr
Match: gi|641823550|gb|KDO42949.1| (hypothetical protein CISIN_1g029206mg [Citrus sinensis])

HSP 1 Score: 255.4 bits (651), Expect = 8.5e-65
Identity = 131/191 (68.59%), Postives = 153/191 (80.10%), Query Frame = 1 

Query: 11  RPHRLLLDETTAAPSNGSSRTRNSYSTEANFDTNMVIILAALLCALICALGLNSIVRCAL 70
           RPHRLLLD   + P    SRTR++ S EANFDTNMVIILAALLCALICALGLNSIVRCAL
Sbjct: 7   RPHRLLLDTEPSTPPTNGSRTRSTVSNEANFDTNMVIILAALLCALICALGLNSIVRCAL 66

Query: 71  RCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSESGLEIRETDCPICLGDFTAGE 130
           RCSRRFAFET   TA+RL A GLKKSALRQIPVAVYG+ +G++I+ TDC ICL DF  GE
Sbjct: 67  RCSRRFAFETPNETAARLAARGLKKSALRQIPVAVYGA-AGVKIKATDCAICLVDFMDGE 126

Query: 131 KIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSASESAAAEAGNRPAGNSSASG 190
           K++VLPKCNHGFHVRCIDTWL SHSSCPTCR+SLL+Q ++S++A  ++  R  GN     
Sbjct: 127 KVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLDQPTSSDAAEMDSEIRHPGNPPGGE 186

Query: 191 QGEISITVDEI 202
           Q ++ I  DE+
Sbjct: 187 QADVPIATDEV 196

The following BLAST results are available for this feature:
BLAST of Lsi03G002640 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ATL72_ARATH1.7e-4458.90RING-H2 finger protein ATL72 OS=Arabidopsis thaliana GN=ATL72 PE=2 SV=1[more]
ATL73_ARATH1.3e-4161.76RING-H2 finger protein ATL73 OS=Arabidopsis thaliana GN=ATL73 PE=2 SV=1[more]
ATL74_ARATH5.5e-4054.55RING-H2 finger protein ATL74 OS=Arabidopsis thaliana GN=ATL74 PE=2 SV=1[more]
ATL78_ARATH2.0e-3754.89RING-H2 finger protein ATL78 OS=Arabidopsis thaliana GN=ATL78 PE=2 SV=1[more]
ATL10_ARATH6.8e-3047.73RING-H2 finger protein ATL10 OS=Arabidopsis thaliana GN=ATL10 PE=2 SV=1[more]
BLAST of Lsi03G002640 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KAH2_CUCSA6.5e-9690.59Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014550 PE=4 SV=1[more]
A0A061FT40_THECC1.6e-6569.90RING/U-box superfamily protein OS=Theobroma cacao GN=TCM_045522 PE=4 SV=1[more]
A0A067DIY0_CITSI5.9e-6568.59Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029206mg PE=4 SV=1[more]
V4THI3_9ROSI5.9e-6568.59Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032803mg PE=4 SV=1[more]
M5X121_PRUPE1.1e-6365.26Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011446mg PE=4 SV=1[more]
BLAST of Lsi03G002640 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G10910.19.4e-4658.90 RING/U-box superfamily protein[more]
AT5G05280.17.4e-4361.76 RING/U-box superfamily protein[more]
AT5G01880.13.1e-4154.55 RING/U-box superfamily protein[more]
AT1G49230.11.1e-3854.89 RING/U-box superfamily protein[more]
AT1G49220.13.8e-3147.73 RING/U-box superfamily protein[more]
BLAST of Lsi03G002640 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659113829|ref|XP_008456776.1|2.6e-9893.60PREDICTED: RING-H2 finger protein ATL74 [Cucumis melo][more]
gi|700190630|gb|KGN45834.1|9.3e-9690.59hypothetical protein Csa_6G014550 [Cucumis sativus][more]
gi|778709680|ref|XP_011656436.1|4.0e-9190.63PREDICTED: RING-H2 finger protein ATL72 [Cucumis sativus][more]
gi|590570340|ref|XP_007011313.1|2.2e-6569.90RING/U-box superfamily protein [Theobroma cacao][more]
gi|641823550|gb|KDO42949.1|8.5e-6568.59hypothetical protein CISIN_1g029206mg [Citrus sinensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0044267 cellular protein metabolic process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi03G002640.1Lsi03G002640.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 118..161
score: 2.1
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 119..160
score: 5.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 119..161
score: 12
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 116..164
score: 8.3
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 40..185
score: 1.8
NoneNo IPR availablePANTHERPTHR14155:SF106SUBFAMILY NOT NAMEDcoord: 40..185
score: 1.8
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 112..167
score: 1.29

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi03G002640Csa6G014550Cucumber (Chinese Long) v2culsiB444
Lsi03G002640CSPI06G02140Wild cucumber (PI 183967)cpilsiB451
Lsi03G002640CSPI04G16550Wild cucumber (PI 183967)cpilsiB280
Lsi03G002640Cucsa.130520Cucumber (Gy14) v1cgylsiB204
Lsi03G002640Cucsa.326000Cucumber (Gy14) v1cgylsiB533
Lsi03G002640CmaCh15G001660Cucurbita maxima (Rimu)cmalsiB276
Lsi03G002640CmaCh04G028640Cucurbita maxima (Rimu)cmalsiB656
Lsi03G002640CmoCh15G001790Cucurbita moschata (Rifu)cmolsiB265
Lsi03G002640CmoCh04G029930Cucurbita moschata (Rifu)cmolsiB645
Lsi03G002640Cla016422Watermelon (97103) v1lsiwmB278
Lsi03G002640MELO3C025221Melon (DHL92) v3.5.1lsimeB276
Lsi03G002640MELO3C020006Melon (DHL92) v3.5.1lsimeB256
Lsi03G002640ClCG10G022690Watermelon (Charleston Gray)lsiwcgB225
Lsi03G002640ClCG11G005680Watermelon (Charleston Gray)lsiwcgB226
Lsi03G002640MELO3C020006.2Melon (DHL92) v3.6.1lsimedB269
Lsi03G002640MELO3C025221.2Melon (DHL92) v3.6.1lsimedB289
Lsi03G002640Cla97C11G212610Watermelon (97103) v2lsiwmbB222
Lsi03G002640Cla97C10G206100Watermelon (97103) v2lsiwmbB221
Lsi03G002640Bhi04G001836Wax gourdlsiwgoB322
Lsi03G002640Bhi11G001453Wax gourdlsiwgoB298
Lsi03G002640Cp4.1LG13g07520Cucurbita pepo (Zucchini)cpelsiB143
Lsi03G002640CsGy6G002220Cucumber (Gy14) v2cgyblsiB409
Lsi03G002640CsGy4G015870Cucumber (Gy14) v2cgyblsiB262
Lsi03G002640Carg02157Silver-seed gourdcarlsiB236
Lsi03G002640Carg05940Silver-seed gourdcarlsiB017
Lsi03G002640CsaV3_4G027170Cucumber (Chinese Long) v3cuclsiB303
Lsi03G002640CsaV3_6G002290Cucumber (Chinese Long) v3cuclsiB473
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi03G002640Bottle gourd (USVL1VR-Ls)lsilsiB072
Lsi03G002640Bottle gourd (USVL1VR-Ls)lsilsiB128
Lsi03G002640Cucumber (Gy14) v1cgylsiB231
Lsi03G002640Cucurbita maxima (Rimu)cmalsiB610
Lsi03G002640Cucurbita maxima (Rimu)cmalsiB659
Lsi03G002640Cucurbita maxima (Rimu)cmalsiB660
Lsi03G002640Cucurbita maxima (Rimu)cmalsiB752
Lsi03G002640Cucurbita moschata (Rifu)cmolsiB598
Lsi03G002640Cucurbita moschata (Rifu)cmolsiB648
Lsi03G002640Cucurbita pepo (Zucchini)cpelsiB064
Lsi03G002640Cucurbita pepo (Zucchini)cpelsiB339
Lsi03G002640Cucumber (Chinese Long) v2culsiB282
Lsi03G002640Cucumber (Chinese Long) v2culsiB361
Lsi03G002640Watermelon (Charleston Gray)lsiwcgB240
Lsi03G002640Watermelon (Charleston Gray)lsiwcgB250
Lsi03G002640Watermelon (97103) v1lsiwmB253
Lsi03G002640Watermelon (97103) v1lsiwmB266
Lsi03G002640Silver-seed gourdcarlsiB572
Lsi03G002640Silver-seed gourdcarlsiB603
Lsi03G002640Cucumber (Chinese Long) v3cuclsiB386
Lsi03G002640Watermelon (97103) v2lsiwmbB234
Lsi03G002640Watermelon (97103) v2lsiwmbB243
Lsi03G002640Wax gourdlsiwgoB335