MELO3C020006 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C020006
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Ring finger protein, putative
Location	chr3 : 19561287 .. 19562698 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTCTTTTACTTCTATTCAAATACCCCCACTTCCCCTCAATAATTTTCTTCTTCTTCTCTTGTTTGGCTAGAGGAAAAATCTTTCTTGGGAGTGCTTGGTTTCTAACAGGGGGCTTGGGTTTTGTGAGGCTAAGAGATTTTCAGTTCTTTTGATGTTTTATCCTGGTTCTTCTCAGAAGATCCTCCATGGGAAACCAAGCTTTTTGCAGCCATGGACACTGTTCTTTGATATGCTCTTGTATTTTGGTTTTTTGAGTGACTGGTAAGATGCTTCGAAACTTCCTAAGAATCCTAAAAGCTGTTTGATTTAACTCTCAAAGAATCATCATTCATCATCCTTTCTAGTTGAAGGCAGATCAGGAAGAATCAAAACAAAGCCCCCTTTTTACAATTGAGCTTCGATTAAGGTCCAGAGAAGAGAGAGCTAGAAGGTGTGAACAGAGAACACGAGGGTTTTATTGGTACATGAGTGGATATGAACTTTCTACTTTAAGTCTCTATTATGAATCGATTCAGTCATCAAAGAATTATAGGGTTCTGAATTATCAAGTTTCACTGTGGAATTTCATCAACCAGGTTCAAGATCTAAAAGTGAATTACCTGACAGAAGCAATCCTGTTGTTGCTTTGAAGTAATTAGCAGCTCCTATGACGATGGAGTCCAATCACCACCGTCCGCGCTCTCACCGCCTCCTCCTCGACGCCGACACGACGGCAGCACCGTCCAACGGAAGCAGAACGCGAAATTCATATAACAACGAAGCCAATTTCGATACAAACATGGTGATAATTCTTGCCGCTTTACTCTGCGCACTGATTTGCGCTCTAGGATTGAACTCAATCGTCCGGTGCGCCCTCCGGTGCAGCCGACGGTTCGCCTTCGAAACAGGCGGCGGCACAGCCTCGCGTCTCACTGCTTCAGGGCTAAAGAAAAGCGCATTACGCCAAATTCCGGTCGCGGTATACGGCTCGGAAACAGGCCTAGAGATCCGAGAAACGGATTGCCCTATCTGCCTAGGAGATTTCATCGCCGGCGAGAAAATCAAAGTACTCCCCAAATGTAACCACGGATTTCACGTTCGATGTATCGATACCTGGTTAGCTTCCCACTCGTCGTGTCCGACATGTCGTCAATCACTGGTGGAACAACAGTCGGTTTCTGAATCGGCGGGAGCAGAGGCCGGTAACCGACCCGCCGGAAATTCATCGGCTAGCGGGCAAGGTGAGATCTCGATAACAGTAGATGAAATTACCTGATTTCAAGGGTTTGCATATTATTTTCATTTGCACATAAATATTCTTTAATTGTTTCAGTTTCCTTTTTAGCGTTTCTTAAGTATTAATAATCTGGATTATACACTAATTAATACAATTAGTGCTTAATTATGAGTTATGTACAATAAATAACCGCA

mRNA sequence

CTCTCTTTTACTTCTATTCAAATACCCCCACTTCCCCTCAATAATTTTCTTCTTCTTCTCTTGTTTGGCTAGAGGAAAAATCTTTCTTGGGAGTGCTTGGTTTCTAACAGGGGGCTTGGGTTTTGTGAGGCTAAGAGATTTTCAGTTCTTTTGATGTTTTATCCTGGTTCTTCTCAGAAGATCCTCCATGGGAAACCAAGCTTTTTGCAGCCATGGACACTGTTCTTTGATATGCTCTTGTATTTTGGTTTTTTGAGTGACTGGTAAGATGCTTCGAAACTTCCTAAGAATCCTAAAAGCTGTTTGATTTAACTCTCAAAGAATCATCATTCATCATCCTTTCTAGTTGAAGGCAGATCAGGAAGAATCAAAACAAAGCCCCCTTTTTACAATTGAGCTTCGATTAAGGTCCAGAGAAGAGAGAGCTAGAAGGTGTGAACAGAGAACACGAGGGTTTTATTGGTACATGAGTGGATATGAACTTTCTACTTTAAGTCTCTATTATGAATCGATTCAGTCATCAAAGAATTATAGGGTTCTGAATTATCAAGTTTCACTGTGGAATTTCATCAACCAGGTTCAAGATCTAAAAGTGAATTACCTGACAGAAGCAATCCTGTTGTTGCTTTGAAGTAATTAGCAGCTCCTATGACGATGGAGTCCAATCACCACCGTCCGCGCTCTCACCGCCTCCTCCTCGACGCCGACACGACGGCAGCACCGTCCAACGGAAGCAGAACGCGAAATTCATATAACAACGAAGCCAATTTCGATACAAACATGGTGATAATTCTTGCCGCTTTACTCTGCGCACTGATTTGCGCTCTAGGATTGAACTCAATCGTCCGGTGCGCCCTCCGGTGCAGCCGACGGTTCGCCTTCGAAACAGGCGGCGGCACAGCCTCGCGTCTCACTGCTTCAGGGCTAAAGAAAAGCGCATTACGCCAAATTCCGGTCGCGGTATACGGCTCGGAAACAGGCCTAGAGATCCGAGAAACGGATTGCCCTATCTGCCTAGGAGATTTCATCGCCGGCGAGAAAATCAAAGTACTCCCCAAATGTAACCACGGATTTCACGTTCGATGTATCGATACCTGGTTAGCTTCCCACTCGTCGTGTCCGACATGTCGTCAATCACTGGTGGAACAACAGTCGGTTTCTGAATCGGCGGGAGCAGAGGCCGGTAACCGACCCGCCGGAAATTCATCGGCTAGCGGGCAAGGTGAGATCTCGATAACAGTAGATGAAATTACCTGATTTCAAGGGTTTGCATATTATTTTCATTTGCACATAAATATTCTTTAATTGTTTCAGTTTCCTTTTTAGCGTTTCTTAAGTATTAATAATCTGGATTATACACTAATTAATACAATTAGTGCTTAATTATGAGTTATGTACAATAAATAACCGCA

Coding sequence (CDS)

ATGACGATGGAGTCCAATCACCACCGTCCGCGCTCTCACCGCCTCCTCCTCGACGCCGACACGACGGCAGCACCGTCCAACGGAAGCAGAACGCGAAATTCATATAACAACGAAGCCAATTTCGATACAAACATGGTGATAATTCTTGCCGCTTTACTCTGCGCACTGATTTGCGCTCTAGGATTGAACTCAATCGTCCGGTGCGCCCTCCGGTGCAGCCGACGGTTCGCCTTCGAAACAGGCGGCGGCACAGCCTCGCGTCTCACTGCTTCAGGGCTAAAGAAAAGCGCATTACGCCAAATTCCGGTCGCGGTATACGGCTCGGAAACAGGCCTAGAGATCCGAGAAACGGATTGCCCTATCTGCCTAGGAGATTTCATCGCCGGCGAGAAAATCAAAGTACTCCCCAAATGTAACCACGGATTTCACGTTCGATGTATCGATACCTGGTTAGCTTCCCACTCGTCGTGTCCGACATGTCGTCAATCACTGGTGGAACAACAGTCGGTTTCTGAATCGGCGGGAGCAGAGGCCGGTAACCGACCCGCCGGAAATTCATCGGCTAGCGGGCAAGGTGAGATCTCGATAACAGTAGATGAAATTACCTGA

Protein sequence

MTMESNHHRPRSHRLLLDADTTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFETGGGTASRLTASGLKKSALRQIPVAVYGSETGLEIRETDCPICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLVEQQSVSESAGAEAGNRPAGNSSASGQGEISITVDEIT*

Homology

[Close]

BLAST of MELO3C020006 vs. Swiss-Prot
Match: ATL72_ARATH (RING-H2 finger protein ATL72 OS=Arabidopsis thaliana GN=ATL72 PE=2 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 2.2e-44
Identity = 95/163 (58.28%), Postives = 112/163 (68.71%), Query Frame = 1


Query: 14  RLLLDADTTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGLNSIVRCALRCS 73
           RLLL+    A P+N +       N+  FDTNMVIILAALLCALICAL LNS +RC LR +
Sbjct: 3   RLLLEPQANA-PANANPKPKGGINDTYFDTNMVIILAALLCALICALSLNSALRCVLRIT 62

Query: 74  RRFAFETGGGTASRLTAS--------GLKKSALRQIPVAVYGSETGLEIRETDCPICLGD 133
           RRF  +     AS   A+        GLKK AL+QIPV +YGS   ++++ T+C ICLGD
Sbjct: 63  RRFTSDDQVSNASNANANLGRLAAATGLKKQALKQIPVGLYGSGI-IDMKATECLICLGD 122

Query: 134 FIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLVEQQ 169
           F  GEK++VLPKCNHGFHVRCIDTWL S SSCPTCRQSL+ +Q
Sbjct: 123 FEDGEKVRVLPKCNHGFHVRCIDTWLLSRSSCPTCRQSLLLEQ 163

[Close]

BLAST of MELO3C020006 vs. Swiss-Prot
Match: ATL73_ARATH (RING-H2 finger protein ATL73 OS=Arabidopsis thaliana GN=ATL73 PE=2 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 6.3e-44
Identity = 87/149 (58.39%), Postives = 107/149 (71.81%), Query Frame = 1


Query: 21  TTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFET 80
           T A P     + ++  N A+ DT+MVIILAALLCALICALG+NS++RC LRC+RRF    
Sbjct: 17  TDANPRTLGDSVSNNKNIASMDTHMVIILAALLCALICALGINSVLRCVLRCTRRFTPNE 76

Query: 81  GGGTASRLTASGLKKSALRQIPVAVYGSETGLEIRETDCPICLGDFIAGEKIKVLPKCNH 140
                +   A G+KK AL+ IPV  Y  E  L+++ T+C ICLGDF+ GE ++VLPKCNH
Sbjct: 77  DPVDTNANVAKGIKKRALKVIPVDSYSPE--LKMKATECLICLGDFVEGETVRVLPKCNH 136

Query: 141 GFHVRCIDTWLASHSSCPTCRQSLVEQQS 170
           GFHV+CIDTWL SHSSCPTCRQSL+E Q+
Sbjct: 137 GFHVKCIDTWLLSHSSCPTCRQSLLEHQT 163

[Close]

BLAST of MELO3C020006 vs. Swiss-Prot
Match: ATL74_ARATH (RING-H2 finger protein ATL74 OS=Arabidopsis thaliana GN=ATL74 PE=2 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 4.5e-42
Identity = 85/154 (55.19%), Postives = 105/154 (68.18%), Query Frame = 1


Query: 13  HRLLLDADTTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGLNSIVRCALRC 72
           HRLLL++      ++GS   + Y  + NFD NMVIILAALLCALI ALGLNSI+RCA+RC
Sbjct: 2   HRLLLESHGGGNETSGSGGGDGYTRDMNFDANMVIILAALLCALILALGLNSILRCAMRC 61

Query: 73  SRRFAFETGGGTASRLTASGLKKSALRQIPVAVYGSETGLEIRETDCPICLGDFIAGEKI 132
               +     GT +    +GLKK  L++ PVA YGS   ++I  T+C ICLG+F  GE++
Sbjct: 62  GFGLSSSAAAGTVA--DRAGLKKRELKKFPVAEYGSGE-VKIAATECAICLGEFADGERV 121

Query: 133 KVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLVE 167
           +VLP CNH FH+ CIDTWL SHSSCP CR SL+E
Sbjct: 122 RVLPPCNHSFHMSCIDTWLVSHSSCPNCRHSLIE 152

[Close]

BLAST of MELO3C020006 vs. Swiss-Prot
Match: ATL78_ARATH (RING-H2 finger protein ATL78 OS=Arabidopsis thaliana GN=ATL78 PE=2 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 4.7e-39
Identity = 77/150 (51.33%), Postives = 99/150 (66.00%), Query Frame = 1


Query: 18  DADTTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFA 77
           D   T APS        Y  + NFD N+V++L+ LLCAL+C+LGLNSI+RCALRCS    
Sbjct: 36  DQSPTPAPS-------PYVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALRCSNLVP 95

Query: 78  FETGGGTAS-RLTASGLKKSALRQIPVAVYGSETGLEIRETDCPICLGDFIAGEKIKVLP 137
            E GG     RLT +G+K+ AL+      Y +E  L   +T+C ICL +F+A E++K+LP
Sbjct: 96  SEAGGDNYPVRLTNTGVKRKALKSFQTVSYSTELNLPGLDTECAICLSEFVAEERVKLLP 155

Query: 138 KCNHGFHVRCIDTWLASHSSCPTCRQSLVE 167
            C+HGFHVRCID WL+SHSSCPTCR  L++
Sbjct: 156 TCHHGFHVRCIDKWLSSHSSCPTCRHCLIQ 178

[Close]

BLAST of MELO3C020006 vs. Swiss-Prot
Match: ATL10_ARATH (RING-H2 finger protein ATL10 OS=Arabidopsis thaliana GN=ATL10 PE=2 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 7.3e-32
Identity = 65/133 (48.87%), Postives = 84/133 (63.16%), Query Frame = 1


Query: 37  NEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFETGGGTASRLTAS---GL 96
           +E N   N++++L+ L+C +IC LGL+ I+RCALR S RF       + S    S   G+
Sbjct: 50  HENNLSGNVMMLLSILICGIICCLGLHYIIRCALRRSTRFMISEPVPSLSSTRGSSNKGI 109

Query: 97  KKSALRQIPVAVYGSETGLEIRETDCPICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLAS 156
           KK ALR  PV  Y  E  L   + +C ICL DF++GE++++LPKCNHGFHVRCID WL  
Sbjct: 110 KKKALRMFPVVSYSPEMNLPGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQQ 169

Query: 157 HSSCPTCRQSLVE 167
           H +CP CR  LVE
Sbjct: 170 HLTCPKCRNCLVE 182

[Close]

BLAST of MELO3C020006 vs. TrEMBL
Match: A0A0A0KAH2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014550 PE=4 SV=1)

HSP 1 Score: 381.3 bits (978), Expect = 7.2e-103
Identity = 189/202 (93.56%), Postives = 193/202 (95.54%), Query Frame = 1


Query: 1   MTMESNHHRPRSHRLLLDADTTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICAL 60
           M MESNHHRPR  RLLLD DTTA PSNGSRTRNSYNNEANFDTNMVIILAALLCALICAL
Sbjct: 1   MRMESNHHRPRPPRLLLDPDTTAPPSNGSRTRNSYNNEANFDTNMVIILAALLCALICAL 60

Query: 61  GLNSIVRCALRCSRRFAFETGGGTASRLTASGLKKSALRQIPVAVYGSETGLEIRETDCP 120
           GLNSIVRCALRCSRRFAFETGGGTASRLTA+GLKKSALRQIPVAVYGSETGLEIRETDCP
Sbjct: 61  GLNSIVRCALRCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSETGLEIRETDCP 120

Query: 121 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLVEQQSVSESAGAEAGN 180
           ICLGDF+AGEKIK+LPKCNHGFHVRCIDTWLASHSSCPTCRQSL+EQQSVSESA  EAGN
Sbjct: 121 ICLGDFMAGEKIKILPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSVSESAVTEAGN 180

Query: 181 RPAGNSSASGQGEISITVDEIT 203
           R AGNSSASGQGEISITVD IT
Sbjct: 181 RGAGNSSASGQGEISITVDGIT 202

[Close]

BLAST of MELO3C020006 vs. TrEMBL
Match: A0A061FT40_THECC (RING/U-box superfamily protein OS=Theobroma cacao GN=TCM_045522 PE=4 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 9.5e-71
Identity = 137/200 (68.50%), Postives = 167/200 (83.50%), Query Frame = 1


Query: 3   MESNHHRPRSHRLLLDADTTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGL 62
           M +++H P  HRLLLD  ++A+P+NG+RTR+S++NEANFDTNMVIILAALLCALICALGL
Sbjct: 1   MVTHYHSP--HRLLLDTQSSASPTNGNRTRSSFSNEANFDTNMVIILAALLCALICALGL 60

Query: 63  NSIVRCALRCSRRFAFETGGGTASRLTASGLKKSALRQIPVAVYGSETGLEIRETDCPIC 122
           NSIVRCALRCSRRFAFET   TA+RL A+GLKK ALRQIPVA+Y S  G+ I+ TDCPIC
Sbjct: 61  NSIVRCALRCSRRFAFETPDETAARLAATGLKKRALRQIPVAIYSS--GINIKATDCPIC 120

Query: 123 LGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLVEQQSVSES-AGAEAGNR 182
           LG+FI GE+++VLPKC+HGFHVRCIDTWL SHSSCPTCRQSL+EQ + S++ A  EAG +
Sbjct: 121 LGEFIDGERVRVLPKCHHGFHVRCIDTWLLSHSSCPTCRQSLLEQPTSSDAGAEMEAGVQ 180

Query: 183 PAGNSSASGQGEISITVDEI 202
             GN S  GQ ++ +  DE+
Sbjct: 181 QHGN-SPGGQFDVPVAADEV 195

[Close]

BLAST of MELO3C020006 vs. TrEMBL
Match: A0A067DIY0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029206mg PE=4 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 1.4e-69
Identity = 134/199 (67.34%), Postives = 161/199 (80.90%), Query Frame = 1


Query: 3   MESNHHRPRSHRLLLDADTTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGL 62
           M + +HRP  HRLLLD + +  P+NGSRTR++ +NEANFDTNMVIILAALLCALICALGL
Sbjct: 1   MVTLNHRP--HRLLLDTEPSTPPTNGSRTRSTVSNEANFDTNMVIILAALLCALICALGL 60

Query: 63  NSIVRCALRCSRRFAFETGGGTASRLTASGLKKSALRQIPVAVYGSETGLEIRETDCPIC 122
           NSIVRCALRCSRRFAFET   TA+RL A GLKKSALRQIPVAVYG+  G++I+ TDC IC
Sbjct: 61  NSIVRCALRCSRRFAFETPNETAARLAARGLKKSALRQIPVAVYGA-AGVKIKATDCAIC 120

Query: 123 LGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLVEQQSVSESAGAEAGNRP 182
           L DF+ GEK++VLPKCNHGFHVRCIDTWL SHSSCPTCR+SL++Q + S++A  ++  R 
Sbjct: 121 LVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLDQPTSSDAAEMDSEIRH 180

Query: 183 AGNSSASGQGEISITVDEI 202
            GN     Q ++ I  DE+
Sbjct: 181 PGNPPGGEQADVPIATDEV 196

[Close]

BLAST of MELO3C020006 vs. TrEMBL
Match: V4THI3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032803mg PE=4 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 1.4e-69
Identity = 134/199 (67.34%), Postives = 161/199 (80.90%), Query Frame = 1


Query: 3   MESNHHRPRSHRLLLDADTTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGL 62
           M + +HRP  HRLLLD + +  P+NGSRTR++ +NEANFDTNMVIILAALLCALICALGL
Sbjct: 1   MVTLNHRP--HRLLLDTEPSTPPTNGSRTRSTVSNEANFDTNMVIILAALLCALICALGL 60

Query: 63  NSIVRCALRCSRRFAFETGGGTASRLTASGLKKSALRQIPVAVYGSETGLEIRETDCPIC 122
           NSIVRCALRCSRRFAFET   TA+RL A GLKKSALRQIPVAVYG+  G++I+ TDC IC
Sbjct: 61  NSIVRCALRCSRRFAFETPDETAARLAARGLKKSALRQIPVAVYGT-AGVKIKATDCAIC 120

Query: 123 LGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLVEQQSVSESAGAEAGNRP 182
           L DF+ GEK++VLPKCNHGFHVRCIDTWL SHSSCPTCR+SL++Q + S++A  ++  R 
Sbjct: 121 LVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLDQPTSSDAAEVDSEIRH 180

Query: 183 AGNSSASGQGEISITVDEI 202
            GN     Q ++ I  DE+
Sbjct: 181 PGNPPGGEQADVPIATDEV 196

[Close]

BLAST of MELO3C020006 vs. TrEMBL
Match: A0A059A953_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J00118 PE=4 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 7.5e-68
Identity = 138/203 (67.98%), Postives = 159/203 (78.33%), Query Frame = 1


Query: 3   MESNHHRPRSHRLLLDADTTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGL 62
           M + HHRP  HRLLLD +  + P+NG+ TR SY NEANFDTNMVIILAALLCALICALGL
Sbjct: 10  MAALHHRP--HRLLLDKEPNSVPNNGTPTRGSYGNEANFDTNMVIILAALLCALICALGL 69

Query: 63  NSIVRCALRCSRRFAFETGGGTASRLTASGLKKSALRQIPVAVYGSETGLEIRETDCPIC 122
           NSIVRCALRCSRRF FET   TA+RL A+GLKKSALRQIPVAVYG+  G+ I  TDCPIC
Sbjct: 70  NSIVRCALRCSRRFTFETPDQTAARLAATGLKKSALRQIPVAVYGA--GINIPATDCPIC 129

Query: 123 LGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLVE----QQSVSESAGAEA 182
           L +F+ GEK++VLPKC+HGFHVRCIDTWL SHSSCPTCRQSL+E      SVS++AG  A
Sbjct: 130 LAEFMDGEKVRVLPKCHHGFHVRCIDTWLVSHSSCPTCRQSLLEPPPPAPSVSDAAG--A 189

Query: 183 GNRPAGNSSASGQGEISITVDEI 202
            N P       G+ ++ I VDE+
Sbjct: 190 ANPP------GGEVDLPIPVDEV 200

[Close]

BLAST of MELO3C020006 vs. TAIR10
Match: AT3G10910.1 (AT3G10910.1 RING/U-box superfamily protein)

HSP 1 Score: 180.3 bits (456), Expect = 1.2e-45
Identity = 95/163 (58.28%), Postives = 112/163 (68.71%), Query Frame = 1


Query: 14  RLLLDADTTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGLNSIVRCALRCS 73
           RLLL+    A P+N +       N+  FDTNMVIILAALLCALICAL LNS +RC LR +
Sbjct: 3   RLLLEPQANA-PANANPKPKGGINDTYFDTNMVIILAALLCALICALSLNSALRCVLRIT 62

Query: 74  RRFAFETGGGTASRLTAS--------GLKKSALRQIPVAVYGSETGLEIRETDCPICLGD 133
           RRF  +     AS   A+        GLKK AL+QIPV +YGS   ++++ T+C ICLGD
Sbjct: 63  RRFTSDDQVSNASNANANLGRLAAATGLKKQALKQIPVGLYGSGI-IDMKATECLICLGD 122

Query: 134 FIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLVEQQ 169
           F  GEK++VLPKCNHGFHVRCIDTWL S SSCPTCRQSL+ +Q
Sbjct: 123 FEDGEKVRVLPKCNHGFHVRCIDTWLLSRSSCPTCRQSLLLEQ 163

[Close]

BLAST of MELO3C020006 vs. TAIR10
Match: AT5G05280.1 (AT5G05280.1 RING/U-box superfamily protein)

HSP 1 Score: 178.7 bits (452), Expect = 3.6e-45
Identity = 87/149 (58.39%), Postives = 107/149 (71.81%), Query Frame = 1


Query: 21  TTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFET 80
           T A P     + ++  N A+ DT+MVIILAALLCALICALG+NS++RC LRC+RRF    
Sbjct: 17  TDANPRTLGDSVSNNKNIASMDTHMVIILAALLCALICALGINSVLRCVLRCTRRFTPNE 76

Query: 81  GGGTASRLTASGLKKSALRQIPVAVYGSETGLEIRETDCPICLGDFIAGEKIKVLPKCNH 140
                +   A G+KK AL+ IPV  Y  E  L+++ T+C ICLGDF+ GE ++VLPKCNH
Sbjct: 77  DPVDTNANVAKGIKKRALKVIPVDSYSPE--LKMKATECLICLGDFVEGETVRVLPKCNH 136

Query: 141 GFHVRCIDTWLASHSSCPTCRQSLVEQQS 170
           GFHV+CIDTWL SHSSCPTCRQSL+E Q+
Sbjct: 137 GFHVKCIDTWLLSHSSCPTCRQSLLEHQT 163

[Close]

BLAST of MELO3C020006 vs. TAIR10
Match: AT5G01880.1 (AT5G01880.1 RING/U-box superfamily protein)

HSP 1 Score: 172.6 bits (436), Expect = 2.6e-43
Identity = 85/154 (55.19%), Postives = 105/154 (68.18%), Query Frame = 1


Query: 13  HRLLLDADTTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGLNSIVRCALRC 72
           HRLLL++      ++GS   + Y  + NFD NMVIILAALLCALI ALGLNSI+RCA+RC
Sbjct: 2   HRLLLESHGGGNETSGSGGGDGYTRDMNFDANMVIILAALLCALILALGLNSILRCAMRC 61

Query: 73  SRRFAFETGGGTASRLTASGLKKSALRQIPVAVYGSETGLEIRETDCPICLGDFIAGEKI 132
               +     GT +    +GLKK  L++ PVA YGS   ++I  T+C ICLG+F  GE++
Sbjct: 62  GFGLSSSAAAGTVA--DRAGLKKRELKKFPVAEYGSGE-VKIAATECAICLGEFADGERV 121

Query: 133 KVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLVE 167
           +VLP CNH FH+ CIDTWL SHSSCP CR SL+E
Sbjct: 122 RVLPPCNHSFHMSCIDTWLVSHSSCPNCRHSLIE 152

[Close]

BLAST of MELO3C020006 vs. TAIR10
Match: AT1G49230.1 (AT1G49230.1 RING/U-box superfamily protein)

HSP 1 Score: 162.5 bits (410), Expect = 2.7e-40
Identity = 77/150 (51.33%), Postives = 99/150 (66.00%), Query Frame = 1


Query: 18  DADTTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFA 77
           D   T APS        Y  + NFD N+V++L+ LLCAL+C+LGLNSI+RCALRCS    
Sbjct: 36  DQSPTPAPS-------PYVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALRCSNLVP 95

Query: 78  FETGGGTAS-RLTASGLKKSALRQIPVAVYGSETGLEIRETDCPICLGDFIAGEKIKVLP 137
            E GG     RLT +G+K+ AL+      Y +E  L   +T+C ICL +F+A E++K+LP
Sbjct: 96  SEAGGDNYPVRLTNTGVKRKALKSFQTVSYSTELNLPGLDTECAICLSEFVAEERVKLLP 155

Query: 138 KCNHGFHVRCIDTWLASHSSCPTCRQSLVE 167
            C+HGFHVRCID WL+SHSSCPTCR  L++
Sbjct: 156 TCHHGFHVRCIDKWLSSHSSCPTCRHCLIQ 178

[Close]

BLAST of MELO3C020006 vs. TAIR10
Match: AT1G49220.1 (AT1G49220.1 RING/U-box superfamily protein)

HSP 1 Score: 138.7 bits (348), Expect = 4.1e-33
Identity = 65/133 (48.87%), Postives = 84/133 (63.16%), Query Frame = 1


Query: 37  NEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFETGGGTASRLTAS---GL 96
           +E N   N++++L+ L+C +IC LGL+ I+RCALR S RF       + S    S   G+
Sbjct: 50  HENNLSGNVMMLLSILICGIICCLGLHYIIRCALRRSTRFMISEPVPSLSSTRGSSNKGI 109

Query: 97  KKSALRQIPVAVYGSETGLEIRETDCPICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLAS 156
           KK ALR  PV  Y  E  L   + +C ICL DF++GE++++LPKCNHGFHVRCID WL  
Sbjct: 110 KKKALRMFPVVSYSPEMNLPGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQQ 169

Query: 157 HSSCPTCRQSLVE 167
           H +CP CR  LVE
Sbjct: 170 HLTCPKCRNCLVE 182

[Close]

BLAST of MELO3C020006 vs. NCBI nr
Match: gi|659113829|ref|XP_008456776.1| (PREDICTED: RING-H2 finger protein ATL74 [Cucumis melo])

HSP 1 Score: 408.3 bits (1048), Expect = 7.9e-111
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 1


Query: 1   MTMESNHHRPRSHRLLLDADTTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICAL 60
           MTMESNHHRPRSHRLLLDADTTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICAL
Sbjct: 1   MTMESNHHRPRSHRLLLDADTTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICAL 60

Query: 61  GLNSIVRCALRCSRRFAFETGGGTASRLTASGLKKSALRQIPVAVYGSETGLEIRETDCP 120
           GLNSIVRCALRCSRRFAFETGGGTASRLTASGLKKSALRQIPVAVYGSETGLEIRETDCP
Sbjct: 61  GLNSIVRCALRCSRRFAFETGGGTASRLTASGLKKSALRQIPVAVYGSETGLEIRETDCP 120

Query: 121 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLVEQQSVSESAGAEAGN 180
           ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLVEQQSVSESAGAEAGN
Sbjct: 121 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLVEQQSVSESAGAEAGN 180

Query: 181 RPAGNSSASGQGEISITVDEIT 203
           RPAGNSSASGQGEISITVDEIT
Sbjct: 181 RPAGNSSASGQGEISITVDEIT 202

[Close]

BLAST of MELO3C020006 vs. NCBI nr
Match: gi|700190630|gb|KGN45834.1| (hypothetical protein Csa_6G014550 [Cucumis sativus])

HSP 1 Score: 381.3 bits (978), Expect = 1.0e-102
Identity = 189/202 (93.56%), Postives = 193/202 (95.54%), Query Frame = 1


Query: 1   MTMESNHHRPRSHRLLLDADTTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICAL 60
           M MESNHHRPR  RLLLD DTTA PSNGSRTRNSYNNEANFDTNMVIILAALLCALICAL
Sbjct: 1   MRMESNHHRPRPPRLLLDPDTTAPPSNGSRTRNSYNNEANFDTNMVIILAALLCALICAL 60

Query: 61  GLNSIVRCALRCSRRFAFETGGGTASRLTASGLKKSALRQIPVAVYGSETGLEIRETDCP 120
           GLNSIVRCALRCSRRFAFETGGGTASRLTA+GLKKSALRQIPVAVYGSETGLEIRETDCP
Sbjct: 61  GLNSIVRCALRCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSETGLEIRETDCP 120

Query: 121 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLVEQQSVSESAGAEAGN 180
           ICLGDF+AGEKIK+LPKCNHGFHVRCIDTWLASHSSCPTCRQSL+EQQSVSESA  EAGN
Sbjct: 121 ICLGDFMAGEKIKILPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSVSESAVTEAGN 180

Query: 181 RPAGNSSASGQGEISITVDEIT 203
           R AGNSSASGQGEISITVD IT
Sbjct: 181 RGAGNSSASGQGEISITVDGIT 202

[Close]

BLAST of MELO3C020006 vs. NCBI nr
Match: gi|778709680|ref|XP_011656436.1| (PREDICTED: RING-H2 finger protein ATL72 [Cucumis sativus])

HSP 1 Score: 366.3 bits (939), Expect = 3.4e-98
Identity = 180/192 (93.75%), Postives = 184/192 (95.83%), Query Frame = 1


Query: 1   MTMESNHHRPRSHRLLLDADTTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICAL 60
           M MESNHHRPR  RLLLD DTTA PSNGSRTRNSYNNEANFDTNMVIILAALLCALICAL
Sbjct: 1   MRMESNHHRPRPPRLLLDPDTTAPPSNGSRTRNSYNNEANFDTNMVIILAALLCALICAL 60

Query: 61  GLNSIVRCALRCSRRFAFETGGGTASRLTASGLKKSALRQIPVAVYGSETGLEIRETDCP 120
           GLNSIVRCALRCSRRFAFETGGGTASRLTA+GLKKSALRQIPVAVYGSETGLEIRETDCP
Sbjct: 61  GLNSIVRCALRCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSETGLEIRETDCP 120

Query: 121 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLVEQQSVSESAGAEAGN 180
           ICLGDF+AGEKIK+LPKCNHGFHVRCIDTWLASHSSCPTCRQSL+EQQSVSESA  EAGN
Sbjct: 121 ICLGDFMAGEKIKILPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSVSESAVTEAGN 180

Query: 181 RPAGNSSASGQG 193
           R AGNSSASGQG
Sbjct: 181 RGAGNSSASGQG 192

[Close]

BLAST of MELO3C020006 vs. NCBI nr
Match: gi|590570340|ref|XP_007011313.1| (RING/U-box superfamily protein [Theobroma cacao])

HSP 1 Score: 274.6 bits (701), Expect = 1.4e-70
Identity = 137/200 (68.50%), Postives = 167/200 (83.50%), Query Frame = 1


Query: 3   MESNHHRPRSHRLLLDADTTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGL 62
           M +++H P  HRLLLD  ++A+P+NG+RTR+S++NEANFDTNMVIILAALLCALICALGL
Sbjct: 1   MVTHYHSP--HRLLLDTQSSASPTNGNRTRSSFSNEANFDTNMVIILAALLCALICALGL 60

Query: 63  NSIVRCALRCSRRFAFETGGGTASRLTASGLKKSALRQIPVAVYGSETGLEIRETDCPIC 122
           NSIVRCALRCSRRFAFET   TA+RL A+GLKK ALRQIPVA+Y S  G+ I+ TDCPIC
Sbjct: 61  NSIVRCALRCSRRFAFETPDETAARLAATGLKKRALRQIPVAIYSS--GINIKATDCPIC 120

Query: 123 LGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLVEQQSVSES-AGAEAGNR 182
           LG+FI GE+++VLPKC+HGFHVRCIDTWL SHSSCPTCRQSL+EQ + S++ A  EAG +
Sbjct: 121 LGEFIDGERVRVLPKCHHGFHVRCIDTWLLSHSSCPTCRQSLLEQPTSSDAGAEMEAGVQ 180

Query: 183 PAGNSSASGQGEISITVDEI 202
             GN S  GQ ++ +  DE+
Sbjct: 181 QHGN-SPGGQFDVPVAADEV 195

[Close]

BLAST of MELO3C020006 vs. NCBI nr
Match: gi|641823550|gb|KDO42949.1| (hypothetical protein CISIN_1g029206mg [Citrus sinensis])

HSP 1 Score: 270.8 bits (691), Expect = 2.0e-69
Identity = 134/199 (67.34%), Postives = 161/199 (80.90%), Query Frame = 1


Query: 3   MESNHHRPRSHRLLLDADTTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGL 62
           M + +HRP  HRLLLD + +  P+NGSRTR++ +NEANFDTNMVIILAALLCALICALGL
Sbjct: 1   MVTLNHRP--HRLLLDTEPSTPPTNGSRTRSTVSNEANFDTNMVIILAALLCALICALGL 60

Query: 63  NSIVRCALRCSRRFAFETGGGTASRLTASGLKKSALRQIPVAVYGSETGLEIRETDCPIC 122
           NSIVRCALRCSRRFAFET   TA+RL A GLKKSALRQIPVAVYG+  G++I+ TDC IC
Sbjct: 61  NSIVRCALRCSRRFAFETPNETAARLAARGLKKSALRQIPVAVYGA-AGVKIKATDCAIC 120

Query: 123 LGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLVEQQSVSESAGAEAGNRP 182
           L DF+ GEK++VLPKCNHGFHVRCIDTWL SHSSCPTCR+SL++Q + S++A  ++  R 
Sbjct: 121 LVDFMDGEKVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLDQPTSSDAAEMDSEIRH 180

Query: 183 AGNSSASGQGEISITVDEI 202
            GN     Q ++ I  DE+
Sbjct: 181 PGNPPGGEQADVPIATDEV 196

The following BLAST results are available for this feature:

BLAST of MELO3C020006 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ATL72_ARATH	2.2e-44	58.28	RING-H2 finger protein ATL72 OS=Arabidopsis thaliana GN=ATL72 PE=2 SV=1	[more]
ATL73_ARATH	6.3e-44	58.39	RING-H2 finger protein ATL73 OS=Arabidopsis thaliana GN=ATL73 PE=2 SV=1	[more]
ATL74_ARATH	4.5e-42	55.19	RING-H2 finger protein ATL74 OS=Arabidopsis thaliana GN=ATL74 PE=2 SV=1	[more]
ATL78_ARATH	4.7e-39	51.33	RING-H2 finger protein ATL78 OS=Arabidopsis thaliana GN=ATL78 PE=2 SV=1	[more]
ATL10_ARATH	7.3e-32	48.87	RING-H2 finger protein ATL10 OS=Arabidopsis thaliana GN=ATL10 PE=2 SV=1	[more]

BLAST of MELO3C020006 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAH2_CUCSA	7.2e-103	93.56	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014550 PE=4 SV=1	[more]
A0A061FT40_THECC	9.5e-71	68.50	RING/U-box superfamily protein OS=Theobroma cacao GN=TCM_045522 PE=4 SV=1	[more]
A0A067DIY0_CITSI	1.4e-69	67.34	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029206mg PE=4 SV=1	[more]
V4THI3_9ROSI	1.4e-69	67.34	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032803mg PE=4 SV=1	[more]
A0A059A953_EUCGR	7.5e-68	67.98	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J00118 PE=4 SV=1	[more]

BLAST of MELO3C020006 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G10910.1	1.2e-45	58.28	RING/U-box superfamily protein	[more]
AT5G05280.1	3.6e-45	58.39	RING/U-box superfamily protein	[more]
AT5G01880.1	2.6e-43	55.19	RING/U-box superfamily protein	[more]
AT1G49230.1	2.7e-40	51.33	RING/U-box superfamily protein	[more]
AT1G49220.1	4.1e-33	48.87	RING/U-box superfamily protein	[more]

BLAST of MELO3C020006 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659113829\|ref\|XP_008456776.1\|	7.9e-111	100.00	PREDICTED: RING-H2 finger protein ATL74 [Cucumis melo]	[more]
gi\|700190630\|gb\|KGN45834.1\|	1.0e-102	93.56	hypothetical protein Csa_6G014550 [Cucumis sativus]	[more]
gi\|778709680\|ref\|XP_011656436.1\|	3.4e-98	93.75	PREDICTED: RING-H2 finger protein ATL72 [Cucumis sativus]	[more]
gi\|590570340\|ref\|XP_007011313.1\|	1.4e-70	68.50	RING/U-box superfamily protein [Theobroma cacao]	[more]
gi\|641823550\|gb\|KDO42949.1\|	2.0e-69	67.34	hypothetical protein CISIN_1g029206mg [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0044267	cellular protein metabolic process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU53149	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C020006T1	MELO3C020006T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU53149	MU53149	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 118..161 score: 6.9
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 119..160 score: 1.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 119..161 score: 12
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 116..165 score: 1.8
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 12..182 score: 1.4
None	No IPR available	PANTHER	PTHR14155:SF106	SUBFAMILY NOT NAMED	coord: 12..182 score: 1.4
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 113..167 score: 1.56

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C020006	Csa6G014550	Cucumber (Chinese Long) v2	cumeB478
MELO3C020006	Cla016422	Watermelon (97103) v1	mewmB333
MELO3C020006	ClCG11G005680	Watermelon (Charleston Gray)	mewcgB268
MELO3C020006	Cla97C11G212610	Watermelon (97103) v2	mewmbB280
MELO3C020006	Bhi04G001836	Wax gourd	mewgoB331
MELO3C020006	CSPI04G16550	Wild cucumber (PI 183967)	cpimeB285
MELO3C020006	CSPI06G02140	Wild cucumber (PI 183967)	cpimeB476
MELO3C020006	Cucsa.326000	Cucumber (Gy14) v1	cgymeB536
MELO3C020006	CmaCh15G001660	Cucurbita maxima (Rimu)	cmameB272
MELO3C020006	CmaCh04G028640	Cucurbita maxima (Rimu)	cmameB676
MELO3C020006	CmoCh15G001790	Cucurbita moschata (Rifu)	cmomeB263
MELO3C020006	CmoCh04G029930	Cucurbita moschata (Rifu)	cmomeB668
MELO3C020006	Lsi03G002640	Bottle gourd (USVL1VR-Ls)	lsimeB256
MELO3C020006	Cp4.1LG13g07520	Cucurbita pepo (Zucchini)	cpemeB165
MELO3C020006	CsGy6G002220	Cucumber (Gy14) v2	cgybmeB418
MELO3C020006	CsGy4G015870	Cucumber (Gy14) v2	cgybmeB247
MELO3C020006	Carg02157	Silver-seed gourd	carmeB0269
MELO3C020006	Carg05940	Silver-seed gourd	carmeB0021
MELO3C020006	CsaV3_6G002290	Cucumber (Chinese Long) v3	cucmeB487

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
MELO3C020006	MELO3C025221	Melon (DHL92) v3.5.1	memeB133

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C020006	Cucurbita pepo (Zucchini)	cpemeB397