Cla016422 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla016422
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Ring-H2 zinc finger protein (AHRD V1 -* Q8W1C6_MAIZE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type
Location	Chr11 : 21155188 .. 21155790 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTCCGATCACCACCGTGACCGTCCCCACCGCCTCCTCCTCGACGCCGATACGACGGCGGCACCGTCTAATGGAAGCAGAACGCGAAATTCATATAGCAACGAAGCCAATTTCGACACGAACATGGTGATAATTCTTGCCGCGTTACTCTGCGCGTTGATTTGCGCTCTAGGACTCAACTCGATTGTCCGGTGCGCCCTCCGCTGCAGCCGGAGGTTCGCCTTCGAGACAGGCGGCGGAACAGCCTCGCGCCTCGCCGCTACAGGGTTAAAGAAAAGCGCATTACGCCAAATTCCAGTTGCCGTATACGGGTCGGAATCGGGTCTAGAGATCCGAGAAACGGATTGCCCTATCTGCCTTGGAGATTTCATCACCGGTGAGAAAATCAAAGTACTCCCCAAATGTAACCACGGATTTCACGTTCGATGTATAGATACCTGGTTGGCTTCCCATTCGTCGTGTCCAACATGTCGTCAATCACTGCTCGAACAACAGTCGGCTTCAGAATCGGCGGCAGCTGAAGCCGGAAACCGACCAAACGGAAATCCATCGGATACCGGCCAAGGTGAGATCTCCATAACCGTAGATGAAATTACCTGA

mRNA sequence

ATGGAGTCCGATCACCACCGTGACCGTCCCCACCGCCTCCTCCTCGACGCCGATACGACGGCGGCACCGTCTAATGGAAGCAGAACGCGAAATTCATATAGCAACGAAGCCAATTTCGACACGAACATGGTGATAATTCTTGCCGCGTTACTCTGCGCGTTGATTTGCGCTCTAGGACTCAACTCGATTGTCCGGTGCGCCCTCCGCTGCAGCCGGAGGTTCGCCTTCGAGACAGGCGGCGGAACAGCCTCGCGCCTCGCCGCTACAGGGTTAAAGAAAAGCGCATTACGCCAAATTCCAGTTGCCGTATACGGGTCGGAATCGGGTCTAGAGATCCGAGAAACGGATTGCCCTATCTGCCTTGGAGATTTCATCACCGGTGAGAAAATCAAAGTACTCCCCAAATGTAACCACGGATTTCACGTTCGATGTATAGATACCTGGTTGGCTTCCCATTCGTCGTGTCCAACATGTCGTCAATCACTGCTCGAACAACAGTCGGCTTCAGAATCGGCGGCAGCTGAAGCCGGAAACCGACCAAACGGAAATCCATCGGATACCGGCCAAGGTGAGATCTCCATAACCGTAGATGAAATTACCTGA

Coding sequence (CDS)

ATGGAGTCCGATCACCACCGTGACCGTCCCCACCGCCTCCTCCTCGACGCCGATACGACGGCGGCACCGTCTAATGGAAGCAGAACGCGAAATTCATATAGCAACGAAGCCAATTTCGACACGAACATGGTGATAATTCTTGCCGCGTTACTCTGCGCGTTGATTTGCGCTCTAGGACTCAACTCGATTGTCCGGTGCGCCCTCCGCTGCAGCCGGAGGTTCGCCTTCGAGACAGGCGGCGGAACAGCCTCGCGCCTCGCCGCTACAGGGTTAAAGAAAAGCGCATTACGCCAAATTCCAGTTGCCGTATACGGGTCGGAATCGGGTCTAGAGATCCGAGAAACGGATTGCCCTATCTGCCTTGGAGATTTCATCACCGGTGAGAAAATCAAAGTACTCCCCAAATGTAACCACGGATTTCACGTTCGATGTATAGATACCTGGTTGGCTTCCCATTCGTCGTGTCCAACATGTCGTCAATCACTGCTCGAACAACAGTCGGCTTCAGAATCGGCGGCAGCTGAAGCCGGAAACCGACCAAACGGAAATCCATCGGATACCGGCCAAGGTGAGATCTCCATAACCGTAGATGAAATTACCTGA

Protein sequence

MESDHHRDRPHRLLLDADTTAAPSNGSRTRNSYSNEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFETGGGTASRLAATGLKKSALRQIPVAVYGSESGLEIRETDCPICLGDFITGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSASESAAAEAGNRPNGNPSDTGQGEISITVDEIT

Homology

[Close]

BLAST of Cla016422 vs. Swiss-Prot
Match: ATL72_ARATH (RING-H2 finger protein ATL72 OS=Arabidopsis thaliana GN=ATL72 PE=2 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 8.7e-46
Identity = 98/163 (60.12%), Postives = 113/163 (69.33%), Query Frame = 1


Query: 12  RLLLDADTTAAPSNGSRTRNSYSNEANFDTNMVIILAALLCALICALGLNSIVRCALRCS 71
           RLLL+    A P+N +       N+  FDTNMVIILAALLCALICAL LNS +RC LR +
Sbjct: 3   RLLLEPQANA-PANANPKPKGGINDTYFDTNMVIILAALLCALICALSLNSALRCVLRIT 62

Query: 72  RRFAFETGGGTASRL--------AATGLKKSALRQIPVAVYGSESGLEIRETDCPICLGD 131
           RRF  +     AS          AATGLKK AL+QIPV +YGS   ++++ T+C ICLGD
Sbjct: 63  RRFTSDDQVSNASNANANLGRLAAATGLKKQALKQIPVGLYGSGI-IDMKATECLICLGD 122

Query: 132 FITGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQ 167
           F  GEK++VLPKCNHGFHVRCIDTWL S SSCPTCRQSLL +Q
Sbjct: 123 FEDGEKVRVLPKCNHGFHVRCIDTWLLSRSSCPTCRQSLLLEQ 163

[Close]

BLAST of Cla016422 vs. Swiss-Prot
Match: ATL73_ARATH (RING-H2 finger protein ATL73 OS=Arabidopsis thaliana GN=ATL73 PE=2 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 2.8e-44
Identity = 88/154 (57.14%), Postives = 109/154 (70.78%), Query Frame = 1


Query: 19  TTAAPSNGSRTRNSYSNEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFET 78
           T A P     + ++  N A+ DT+MVIILAALLCALICALG+NS++RC LRC+RRF    
Sbjct: 17  TDANPRTLGDSVSNNKNIASMDTHMVIILAALLCALICALGINSVLRCVLRCTRRFTPNE 76

Query: 79  GGGTASRLAATGLKKSALRQIPVAVYGSESGLEIRETDCPICLGDFITGEKIKVLPKCNH 138
                +   A G+KK AL+ IPV  Y  E  L+++ T+C ICLGDF+ GE ++VLPKCNH
Sbjct: 77  DPVDTNANVAKGIKKRALKVIPVDSYSPE--LKMKATECLICLGDFVEGETVRVLPKCNH 136

Query: 139 GFHVRCIDTWLASHSSCPTCRQSLLEQQSASESA 173
           GFHV+CIDTWL SHSSCPTCRQSLLE Q+ +  +
Sbjct: 137 GFHVKCIDTWLLSHSSCPTCRQSLLEHQTPANGS 168

[Close]

BLAST of Cla016422 vs. Swiss-Prot
Match: ATL74_ARATH (RING-H2 finger protein ATL74 OS=Arabidopsis thaliana GN=ATL74 PE=2 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 2.0e-42
Identity = 86/154 (55.84%), Postives = 106/154 (68.83%), Query Frame = 1


Query: 11  HRLLLDADTTAAPSNGSRTRNSYSNEANFDTNMVIILAALLCALICALGLNSIVRCALRC 70
           HRLLL++      ++GS   + Y+ + NFD NMVIILAALLCALI ALGLNSI+RCA+RC
Sbjct: 2   HRLLLESHGGGNETSGSGGGDGYTRDMNFDANMVIILAALLCALILALGLNSILRCAMRC 61

Query: 71  SRRFAFETGGGTASRLAATGLKKSALRQIPVAVYGSESGLEIRETDCPICLGDFITGEKI 130
               +     GT +  A  GLKK  L++ PVA YGS   ++I  T+C ICLG+F  GE++
Sbjct: 62  GFGLSSSAAAGTVADRA--GLKKRELKKFPVAEYGSGE-VKIAATECAICLGEFADGERV 121

Query: 131 KVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLE 165
           +VLP CNH FH+ CIDTWL SHSSCP CR SL+E
Sbjct: 122 RVLPPCNHSFHMSCIDTWLVSHSSCPNCRHSLIE 152

[Close]

BLAST of Cla016422 vs. Swiss-Prot
Match: ATL78_ARATH (RING-H2 finger protein ATL78 OS=Arabidopsis thaliana GN=ATL78 PE=2 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.3e-38
Identity = 76/150 (50.67%), Postives = 97/150 (64.67%), Query Frame = 1


Query: 16  DADTTAAPSNGSRTRNSYSNEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFA 75
           D   T APS        Y  + NFD N+V++L+ LLCAL+C+LGLNSI+RCALRCS    
Sbjct: 36  DQSPTPAPS-------PYVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALRCSNLVP 95

Query: 76  FETGGGTAS-RLAATGLKKSALRQIPVAVYGSESGLEIRETDCPICLGDFITGEKIKVLP 135
            E GG     RL  TG+K+ AL+      Y +E  L   +T+C ICL +F+  E++K+LP
Sbjct: 96  SEAGGDNYPVRLTNTGVKRKALKSFQTVSYSTELNLPGLDTECAICLSEFVAEERVKLLP 155

Query: 136 KCNHGFHVRCIDTWLASHSSCPTCRQSLLE 165
            C+HGFHVRCID WL+SHSSCPTCR  L++
Sbjct: 156 TCHHGFHVRCIDKWLSSHSSCPTCRHCLIQ 178

[Close]

BLAST of Cla016422 vs. Swiss-Prot
Match: ATL10_ARATH (RING-H2 finger protein ATL10 OS=Arabidopsis thaliana GN=ATL10 PE=2 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.7e-31
Identity = 63/134 (47.01%), Postives = 85/134 (63.43%), Query Frame = 1


Query: 34  SNEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFETGGGTASRLAAT---G 93
           ++E N   N++++L+ L+C +IC LGL+ I+RCALR S RF       + S    +   G
Sbjct: 49  THENNLSGNVMMLLSILICGIICCLGLHYIIRCALRRSTRFMISEPVPSLSSTRGSSNKG 108

Query: 94  LKKSALRQIPVAVYGSESGLEIRETDCPICLGDFITGEKIKVLPKCNHGFHVRCIDTWLA 153
           +KK ALR  PV  Y  E  L   + +C ICL DF++GE++++LPKCNHGFHVRCID WL 
Sbjct: 109 IKKKALRMFPVVSYSPEMNLPGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQ 168

Query: 154 SHSSCPTCRQSLLE 165
            H +CP CR  L+E
Sbjct: 169 QHLTCPKCRNCLVE 182

[Close]

BLAST of Cla016422 vs. TrEMBL
Match: A0A0A0KAH2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014550 PE=4 SV=1)

HSP 1 Score: 365.5 bits (937), Expect = 4.0e-98
Identity = 180/200 (90.00%), Postives = 186/200 (93.00%), Query Frame = 1


Query: 1   MESDHHRDRPHRLLLDADTTAAPSNGSRTRNSYSNEANFDTNMVIILAALLCALICALGL 60
           MES+HHR RP RLLLD DTTA PSNGSRTRNSY+NEANFDTNMVIILAALLCALICALGL
Sbjct: 3   MESNHHRPRPPRLLLDPDTTAPPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGL 62

Query: 61  NSIVRCALRCSRRFAFETGGGTASRLAATGLKKSALRQIPVAVYGSESGLEIRETDCPIC 120
           NSIVRCALRCSRRFAFETGGGTASRL ATGLKKSALRQIPVAVYGSE+GLEIRETDCPIC
Sbjct: 63  NSIVRCALRCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSETGLEIRETDCPIC 122

Query: 121 LGDFITGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSASESAAAEAGNRP 180
           LGDF+ GEKIK+LPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQS SESA  EAGNR 
Sbjct: 123 LGDFMAGEKIKILPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSVSESAVTEAGNRG 182

Query: 181 NGNPSDTGQGEISITVDEIT 201
            GN S +GQGEISITVD IT
Sbjct: 183 AGNSSASGQGEISITVDGIT 202

[Close]

BLAST of Cla016422 vs. TrEMBL
Match: A0A061FT40_THECC (RING/U-box superfamily protein OS=Theobroma cacao GN=TCM_045522 PE=4 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 1.5e-73
Identity = 140/195 (71.79%), Postives = 166/195 (85.13%), Query Frame = 1


Query: 6   HRDRPHRLLLDADTTAAPSNGSRTRNSYSNEANFDTNMVIILAALLCALICALGLNSIVR 65
           H   PHRLLLD  ++A+P+NG+RTR+S+SNEANFDTNMVIILAALLCALICALGLNSIVR
Sbjct: 4   HYHSPHRLLLDTQSSASPTNGNRTRSSFSNEANFDTNMVIILAALLCALICALGLNSIVR 63

Query: 66  CALRCSRRFAFETGGGTASRLAATGLKKSALRQIPVAVYGSESGLEIRETDCPICLGDFI 125
           CALRCSRRFAFET   TA+RLAATGLKK ALRQIPVA+Y   SG+ I+ TDCPICLG+FI
Sbjct: 64  CALRCSRRFAFETPDETAARLAATGLKKRALRQIPVAIY--SSGINIKATDCPICLGEFI 123

Query: 126 TGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSASESAA-AEAGNRPNGNP 185
            GE+++VLPKC+HGFHVRCIDTWL SHSSCPTCRQSLLEQ ++S++ A  EAG + +GN 
Sbjct: 124 DGERVRVLPKCHHGFHVRCIDTWLLSHSSCPTCRQSLLEQPTSSDAGAEMEAGVQQHGN- 183

Query: 186 SDTGQGEISITVDEI 200
           S  GQ ++ +  DE+
Sbjct: 184 SPGGQFDVPVAADEV 195

[Close]

BLAST of Cla016422 vs. TrEMBL
Match: A0A067DIY0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029206mg PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 2.9e-72
Identity = 136/191 (71.20%), Postives = 161/191 (84.29%), Query Frame = 1


Query: 9   RPHRLLLDADTTAAPSNGSRTRNSYSNEANFDTNMVIILAALLCALICALGLNSIVRCAL 68
           RPHRLLLD + +  P+NGSRTR++ SNEANFDTNMVIILAALLCALICALGLNSIVRCAL
Sbjct: 7   RPHRLLLDTEPSTPPTNGSRTRSTVSNEANFDTNMVIILAALLCALICALGLNSIVRCAL 66

Query: 69  RCSRRFAFETGGGTASRLAATGLKKSALRQIPVAVYGSESGLEIRETDCPICLGDFITGE 128
           RCSRRFAFET   TA+RLAA GLKKSALRQIPVAVYG+ +G++I+ TDC ICL DF+ GE
Sbjct: 67  RCSRRFAFETPNETAARLAARGLKKSALRQIPVAVYGA-AGVKIKATDCAICLVDFMDGE 126

Query: 129 KIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSASESAAAEAGNRPNGNPSDTG 188
           K++VLPKCNHGFHVRCIDTWL SHSSCPTCR+SLL+Q ++S++A  ++  R  GNP    
Sbjct: 127 KVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLDQPTSSDAAEMDSEIRHPGNPPGGE 186

Query: 189 QGEISITVDEI 200
           Q ++ I  DE+
Sbjct: 187 QADVPIATDEV 196

[Close]

BLAST of Cla016422 vs. TrEMBL
Match: V4THI3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032803mg PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 2.9e-72
Identity = 136/191 (71.20%), Postives = 161/191 (84.29%), Query Frame = 1


Query: 9   RPHRLLLDADTTAAPSNGSRTRNSYSNEANFDTNMVIILAALLCALICALGLNSIVRCAL 68
           RPHRLLLD + +  P+NGSRTR++ SNEANFDTNMVIILAALLCALICALGLNSIVRCAL
Sbjct: 7   RPHRLLLDTEPSTPPTNGSRTRSTVSNEANFDTNMVIILAALLCALICALGLNSIVRCAL 66

Query: 69  RCSRRFAFETGGGTASRLAATGLKKSALRQIPVAVYGSESGLEIRETDCPICLGDFITGE 128
           RCSRRFAFET   TA+RLAA GLKKSALRQIPVAVYG+ +G++I+ TDC ICL DF+ GE
Sbjct: 67  RCSRRFAFETPDETAARLAARGLKKSALRQIPVAVYGT-AGVKIKATDCAICLVDFMDGE 126

Query: 129 KIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSASESAAAEAGNRPNGNPSDTG 188
           K++VLPKCNHGFHVRCIDTWL SHSSCPTCR+SLL+Q ++S++A  ++  R  GNP    
Sbjct: 127 KVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLDQPTSSDAAEVDSEIRHPGNPPGGE 186

Query: 189 QGEISITVDEI 200
           Q ++ I  DE+
Sbjct: 187 QADVPIATDEV 196

[Close]

BLAST of Cla016422 vs. TrEMBL
Match: A0A059A953_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J00118 PE=4 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 3.9e-69
Identity = 140/201 (69.65%), Postives = 158/201 (78.61%), Query Frame = 1


Query: 1   MESDHHRDRPHRLLLDADTTAAPSNGSRTRNSYSNEANFDTNMVIILAALLCALICALGL 60
           M + HHR  PHRLLLD +  + P+NG+ TR SY NEANFDTNMVIILAALLCALICALGL
Sbjct: 10  MAALHHR--PHRLLLDKEPNSVPNNGTPTRGSYGNEANFDTNMVIILAALLCALICALGL 69

Query: 61  NSIVRCALRCSRRFAFETGGGTASRLAATGLKKSALRQIPVAVYGSESGLEIRETDCPIC 120
           NSIVRCALRCSRRF FET   TA+RLAATGLKKSALRQIPVAVYG  +G+ I  TDCPIC
Sbjct: 70  NSIVRCALRCSRRFTFETPDQTAARLAATGLKKSALRQIPVAVYG--AGINIPATDCPIC 129

Query: 121 LGDFITGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLE--QQSASESAAAEAGN 180
           L +F+ GEK++VLPKC+HGFHVRCIDTWL SHSSCPTCRQSLLE    + S S AA A N
Sbjct: 130 LAEFMDGEKVRVLPKCHHGFHVRCIDTWLVSHSSCPTCRQSLLEPPPPAPSVSDAAGAAN 189

Query: 181 RPNGNPSDTGQGEISITVDEI 200
            P       G+ ++ I VDE+
Sbjct: 190 PPG------GEVDLPIPVDEV 200

[Close]

BLAST of Cla016422 vs. NCBI nr
Match: gi|659113829|ref|XP_008456776.1| (PREDICTED: RING-H2 finger protein ATL74 [Cucumis melo])

HSP 1 Score: 376.7 bits (966), Expect = 2.5e-101
Identity = 185/200 (92.50%), Postives = 191/200 (95.50%), Query Frame = 1


Query: 1   MESDHHRDRPHRLLLDADTTAAPSNGSRTRNSYSNEANFDTNMVIILAALLCALICALGL 60
           MES+HHR R HRLLLDADTTAAPSNGSRTRNSY+NEANFDTNMVIILAALLCALICALGL
Sbjct: 3   MESNHHRPRSHRLLLDADTTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGL 62

Query: 61  NSIVRCALRCSRRFAFETGGGTASRLAATGLKKSALRQIPVAVYGSESGLEIRETDCPIC 120
           NSIVRCALRCSRRFAFETGGGTASRL A+GLKKSALRQIPVAVYGSE+GLEIRETDCPIC
Sbjct: 63  NSIVRCALRCSRRFAFETGGGTASRLTASGLKKSALRQIPVAVYGSETGLEIRETDCPIC 122

Query: 121 LGDFITGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSASESAAAEAGNRP 180
           LGDFI GEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSL+EQQS SESA AEAGNRP
Sbjct: 123 LGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLVEQQSVSESAGAEAGNRP 182

Query: 181 NGNPSDTGQGEISITVDEIT 201
            GN S +GQGEISITVDEIT
Sbjct: 183 AGNSSASGQGEISITVDEIT 202

[Close]

BLAST of Cla016422 vs. NCBI nr
Match: gi|700190630|gb|KGN45834.1| (hypothetical protein Csa_6G014550 [Cucumis sativus])

HSP 1 Score: 365.5 bits (937), Expect = 5.8e-98
Identity = 180/200 (90.00%), Postives = 186/200 (93.00%), Query Frame = 1


Query: 1   MESDHHRDRPHRLLLDADTTAAPSNGSRTRNSYSNEANFDTNMVIILAALLCALICALGL 60
           MES+HHR RP RLLLD DTTA PSNGSRTRNSY+NEANFDTNMVIILAALLCALICALGL
Sbjct: 3   MESNHHRPRPPRLLLDPDTTAPPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGL 62

Query: 61  NSIVRCALRCSRRFAFETGGGTASRLAATGLKKSALRQIPVAVYGSESGLEIRETDCPIC 120
           NSIVRCALRCSRRFAFETGGGTASRL ATGLKKSALRQIPVAVYGSE+GLEIRETDCPIC
Sbjct: 63  NSIVRCALRCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSETGLEIRETDCPIC 122

Query: 121 LGDFITGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSASESAAAEAGNRP 180
           LGDF+ GEKIK+LPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQS SESA  EAGNR 
Sbjct: 123 LGDFMAGEKIKILPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSVSESAVTEAGNRG 182

Query: 181 NGNPSDTGQGEISITVDEIT 201
            GN S +GQGEISITVD IT
Sbjct: 183 AGNSSASGQGEISITVDGIT 202

[Close]

BLAST of Cla016422 vs. NCBI nr
Match: gi|778709680|ref|XP_011656436.1| (PREDICTED: RING-H2 finger protein ATL72 [Cucumis sativus])

HSP 1 Score: 350.5 bits (898), Expect = 1.9e-93
Identity = 171/190 (90.00%), Postives = 177/190 (93.16%), Query Frame = 1


Query: 1   MESDHHRDRPHRLLLDADTTAAPSNGSRTRNSYSNEANFDTNMVIILAALLCALICALGL 60
           MES+HHR RP RLLLD DTTA PSNGSRTRNSY+NEANFDTNMVIILAALLCALICALGL
Sbjct: 3   MESNHHRPRPPRLLLDPDTTAPPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGL 62

Query: 61  NSIVRCALRCSRRFAFETGGGTASRLAATGLKKSALRQIPVAVYGSESGLEIRETDCPIC 120
           NSIVRCALRCSRRFAFETGGGTASRL ATGLKKSALRQIPVAVYGSE+GLEIRETDCPIC
Sbjct: 63  NSIVRCALRCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSETGLEIRETDCPIC 122

Query: 121 LGDFITGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSASESAAAEAGNRP 180
           LGDF+ GEKIK+LPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQS SESA  EAGNR 
Sbjct: 123 LGDFMAGEKIKILPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSVSESAVTEAGNRG 182

Query: 181 NGNPSDTGQG 191
            GN S +GQG
Sbjct: 183 AGNSSASGQG 192

[Close]

BLAST of Cla016422 vs. NCBI nr
Match: gi|590570340|ref|XP_007011313.1| (RING/U-box superfamily protein [Theobroma cacao])

HSP 1 Score: 283.9 bits (725), Expect = 2.2e-73
Identity = 140/195 (71.79%), Postives = 166/195 (85.13%), Query Frame = 1


Query: 6   HRDRPHRLLLDADTTAAPSNGSRTRNSYSNEANFDTNMVIILAALLCALICALGLNSIVR 65
           H   PHRLLLD  ++A+P+NG+RTR+S+SNEANFDTNMVIILAALLCALICALGLNSIVR
Sbjct: 4   HYHSPHRLLLDTQSSASPTNGNRTRSSFSNEANFDTNMVIILAALLCALICALGLNSIVR 63

Query: 66  CALRCSRRFAFETGGGTASRLAATGLKKSALRQIPVAVYGSESGLEIRETDCPICLGDFI 125
           CALRCSRRFAFET   TA+RLAATGLKK ALRQIPVA+Y   SG+ I+ TDCPICLG+FI
Sbjct: 64  CALRCSRRFAFETPDETAARLAATGLKKRALRQIPVAIY--SSGINIKATDCPICLGEFI 123

Query: 126 TGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSASESAA-AEAGNRPNGNP 185
            GE+++VLPKC+HGFHVRCIDTWL SHSSCPTCRQSLLEQ ++S++ A  EAG + +GN 
Sbjct: 124 DGERVRVLPKCHHGFHVRCIDTWLLSHSSCPTCRQSLLEQPTSSDAGAEMEAGVQQHGN- 183

Query: 186 SDTGQGEISITVDEI 200
           S  GQ ++ +  DE+
Sbjct: 184 SPGGQFDVPVAADEV 195

[Close]

BLAST of Cla016422 vs. NCBI nr
Match: gi|641823550|gb|KDO42949.1| (hypothetical protein CISIN_1g029206mg [Citrus sinensis])

HSP 1 Score: 279.6 bits (714), Expect = 4.2e-72
Identity = 136/191 (71.20%), Postives = 161/191 (84.29%), Query Frame = 1


Query: 9   RPHRLLLDADTTAAPSNGSRTRNSYSNEANFDTNMVIILAALLCALICALGLNSIVRCAL 68
           RPHRLLLD + +  P+NGSRTR++ SNEANFDTNMVIILAALLCALICALGLNSIVRCAL
Sbjct: 7   RPHRLLLDTEPSTPPTNGSRTRSTVSNEANFDTNMVIILAALLCALICALGLNSIVRCAL 66

Query: 69  RCSRRFAFETGGGTASRLAATGLKKSALRQIPVAVYGSESGLEIRETDCPICLGDFITGE 128
           RCSRRFAFET   TA+RLAA GLKKSALRQIPVAVYG+ +G++I+ TDC ICL DF+ GE
Sbjct: 67  RCSRRFAFETPNETAARLAARGLKKSALRQIPVAVYGA-AGVKIKATDCAICLVDFMDGE 126

Query: 129 KIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSASESAAAEAGNRPNGNPSDTG 188
           K++VLPKCNHGFHVRCIDTWL SHSSCPTCR+SLL+Q ++S++A  ++  R  GNP    
Sbjct: 127 KVRVLPKCNHGFHVRCIDTWLMSHSSCPTCRRSLLDQPTSSDAAEMDSEIRHPGNPPGGE 186

Query: 189 QGEISITVDEI 200
           Q ++ I  DE+
Sbjct: 187 QADVPIATDEV 196

The following BLAST results are available for this feature:

BLAST of Cla016422 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ATL72_ARATH	8.7e-46	60.12	RING-H2 finger protein ATL72 OS=Arabidopsis thaliana GN=ATL72 PE=2 SV=1	[more]
ATL73_ARATH	2.8e-44	57.14	RING-H2 finger protein ATL73 OS=Arabidopsis thaliana GN=ATL73 PE=2 SV=1	[more]
ATL74_ARATH	2.0e-42	55.84	RING-H2 finger protein ATL74 OS=Arabidopsis thaliana GN=ATL74 PE=2 SV=1	[more]
ATL78_ARATH	2.3e-38	50.67	RING-H2 finger protein ATL78 OS=Arabidopsis thaliana GN=ATL78 PE=2 SV=1	[more]
ATL10_ARATH	2.7e-31	47.01	RING-H2 finger protein ATL10 OS=Arabidopsis thaliana GN=ATL10 PE=2 SV=1	[more]

BLAST of Cla016422 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAH2_CUCSA	4.0e-98	90.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014550 PE=4 SV=1	[more]
A0A061FT40_THECC	1.5e-73	71.79	RING/U-box superfamily protein OS=Theobroma cacao GN=TCM_045522 PE=4 SV=1	[more]
A0A067DIY0_CITSI	2.9e-72	71.20	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029206mg PE=4 SV=1	[more]
V4THI3_9ROSI	2.9e-72	71.20	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032803mg PE=4 SV=1	[more]
A0A059A953_EUCGR	3.9e-69	69.65	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J00118 PE=4 SV=1	[more]

BLAST of Cla016422 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659113829\|ref\|XP_008456776.1\|	2.5e-101	92.50	PREDICTED: RING-H2 finger protein ATL74 [Cucumis melo]	[more]
gi\|700190630\|gb\|KGN45834.1\|	5.8e-98	90.00	hypothetical protein Csa_6G014550 [Cucumis sativus]	[more]
gi\|778709680\|ref\|XP_011656436.1\|	1.9e-93	90.00	PREDICTED: RING-H2 finger protein ATL72 [Cucumis sativus]	[more]
gi\|590570340\|ref\|XP_007011313.1\|	2.2e-73	71.79	RING/U-box superfamily protein [Theobroma cacao]	[more]
gi\|641823550\|gb\|KDO42949.1\|	4.2e-72	71.20	hypothetical protein CISIN_1g029206mg [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU30095	watermelon unigene v2 vs TrEMBL	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla016422	Cla016422.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU30095	WMU30095	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 116..159 score: 6.4
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 117..158 score: 1.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 117..159 score: 12
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 114..162 score: 2.1
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 12..183 score: 8.4
None	No IPR available	PANTHER	PTHR14155:SF106	SUBFAMILY NOT NAMED	coord: 12..183 score: 8.4
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 110..165 score: 1.49

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla016422	Cla97C11G212610	Watermelon (97103) v2	wmwmbB361
Cla016422	Csa6G014550	Cucumber (Chinese Long) v2	cuwmB534
Cla016422	MELO3C020006	Melon (DHL92) v3.5.1	mewmB333
Cla016422	ClCG11G005680	Watermelon (Charleston Gray)	wcgwmB107
Cla016422	CSPI06G02140	Wild cucumber (PI 183967)	cpiwmB553
Cla016422	Cucsa.326000	Cucumber (Gy14) v1	cgywmB591
Cla016422	CmaCh15G001660	Cucurbita maxima (Rimu)	cmawmB284
Cla016422	CmaCh04G028640	Cucurbita maxima (Rimu)	cmawmB736
Cla016422	CmoCh15G001790	Cucurbita moschata (Rifu)	cmowmB275
Cla016422	CmoCh04G029930	Cucurbita moschata (Rifu)	cmowmB730
Cla016422	Lsi03G002640	Bottle gourd (USVL1VR-Ls)	lsiwmB278
Cla016422	Cp4.1LG13g07520	Cucurbita pepo (Zucchini)	cpewmB195
Cla016422	CsGy6G002220	Cucumber (Gy14) v2	cgybwmB498
Cla016422	MELO3C020006.2	Melon (DHL92) v3.6.1	medwmB330
Cla016422	Carg05940	Silver-seed gourd	carwmB0025
Cla016422	Carg02157	Silver-seed gourd	carwmB0260
Cla016422	CsaV3_6G002290	Cucumber (Chinese Long) v3	cucwmB559
Cla016422	Bhi04G001836	Wax gourd	wgowmB348

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla016422	Cucurbita pepo (Zucchini)	cpewmB462