Carg02157 (gene) Silver-seed gourd

Overview
NameCarg02157
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionRING-H2 finger protein
LocationCucurbita_argyrosperma_scaffold_007 : 322082 .. 323083 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAACTAGAGCTTTTTGCAGCCATGGATACTATTGTTTGGCATGTTGTTGGGTATTGGTTTTTTGAGTGGCCACTGACTTGTAAGATGCTTTGAAACTTCGTTGGAATACTAAGAATTGTTTGATTCAACTCTTAAAGGATCATTGTTCATCGTTCTTTCTAGTTGAAGGCAGATCAGGAACAGAGAACACAAGGGTTTGATTGGCACATGAGTGATATGAACTTTCTATTTTCAGTCTCTCTTGTTGTTAGATTCGCTCATCAAAGAACTAAGGGGTTTTGAATTATCAAGTTTCACTGCGGAATTTCATCAAACAGGTTGAAGATCTAAAGAAAATTACCTTTGGCAGCATCAGTCCTGCTGTTGTTTTGAAGTTGTTTGCTGCTCCTATGGCGATGGTGTCCGATCACCACCGTCCCCGTCCCCACCGCCTCCTCCTCGACGCCAACACGACGGAGGCGCCGTCGAATGGAAGCAGAACGCGAAATTCGTATACCAACGAAGCCAATTTCGACACGAACATGGTGATAATCCTTGCCGCGTTACTCTGCGCACTGATTTGCGCTCTAGGATTGAACTCAATCGTCCGGTGCGCCCTCCGCTGCAGCCGACGATTCTCCTTCGAGACAGGCGGCGGCACAGCCTCGCGCCTCGCCGCAACAGGGCTGAAGAAAAGCGCATTACGCAAACTTCCGGTCACCGTATACGGGTCGGAGTCGGGTCTAGGGATTCGAGAAACGGATTGCCCTATCTGCCTGGGAGATTTCATCGCCGGAGAGAAAATCAAAGTGCTTCCAAAATGTAACCACGGATTTCACGTCCGATGTATCGATACCTGGTTGGCTTCCCACTCGTCGTGTCCGACGTGTCGTCAATCGCTGTTCGAACAACAGTCAGCTTCTGAATCAACGGAAGCCGACGCCGGAAACCGACCCGCCGGAAATTCATCAGCTAGCGGCCAAGGTGAGATCTCGATACCCATAGATCAAATCAGCTGA

mRNA sequence

ATGGGAACTAGAGCTTTTTGCAGCCATGGATACTATTGTTTGGCATGTTGTTGGGTTGAAGATCTAAAGAAAATTACCTTTGGCAGCATCAGTCCTGCTGTTGTTTTGAAGTTGTTTGCTGCTCCTATGGCGATGGTGTCCGATCACCACCGTCCCCGTCCCCACCGCCTCCTCCTCGACGCCAACACGACGGAGGCGCCGTCGAATGGAAGCAGAACGCGAAATTCGTATACCAACGAAGCCAATTTCGACACGAACATGGTGATAATCCTTGCCGCGTTACTCTGCGCACTGATTTGCGCTCTAGGATTGAACTCAATCGTCCGGTGCGCCCTCCGCTGCAGCCGACGATTCTCCTTCGAGACAGGCGGCGGCACAGCCTCGCGCCTCGCCGCAACAGGGCTGAAGAAAAGCGCATTACGCAAACTTCCGGTCACCGTATACGGGTCGGAGTCGGGTCTAGGGATTCGAGAAACGGATTGCCCTATCTGCCTGGGAGATTTCATCGCCGGAGAGAAAATCAAAGTGCTTCCAAAATGTAACCACGGATTTCACGTCCGATGTATCGATACCTGGTTGGCTTCCCACTCGTCGTGTCCGACGTGTCGTCAATCGCTGTTCGAACAACAGTCAGCTTCTGAATCAACGGAAGCCGACGCCGGAAACCGACCCGCCGGAAATTCATCAGCTAGCGGCCAAGGTGAGATCTCGATACCCATAGATCAAATCAGCTGA

Coding sequence (CDS)

ATGGGAACTAGAGCTTTTTGCAGCCATGGATACTATTGTTTGGCATGTTGTTGGGTTGAAGATCTAAAGAAAATTACCTTTGGCAGCATCAGTCCTGCTGTTGTTTTGAAGTTGTTTGCTGCTCCTATGGCGATGGTGTCCGATCACCACCGTCCCCGTCCCCACCGCCTCCTCCTCGACGCCAACACGACGGAGGCGCCGTCGAATGGAAGCAGAACGCGAAATTCGTATACCAACGAAGCCAATTTCGACACGAACATGGTGATAATCCTTGCCGCGTTACTCTGCGCACTGATTTGCGCTCTAGGATTGAACTCAATCGTCCGGTGCGCCCTCCGCTGCAGCCGACGATTCTCCTTCGAGACAGGCGGCGGCACAGCCTCGCGCCTCGCCGCAACAGGGCTGAAGAAAAGCGCATTACGCAAACTTCCGGTCACCGTATACGGGTCGGAGTCGGGTCTAGGGATTCGAGAAACGGATTGCCCTATCTGCCTGGGAGATTTCATCGCCGGAGAGAAAATCAAAGTGCTTCCAAAATGTAACCACGGATTTCACGTCCGATGTATCGATACCTGGTTGGCTTCCCACTCGTCGTGTCCGACGTGTCGTCAATCGCTGTTCGAACAACAGTCAGCTTCTGAATCAACGGAAGCCGACGCCGGAAACCGACCCGCCGGAAATTCATCAGCTAGCGGCCAAGGTGAGATCTCGATACCCATAGATCAAATCAGCTGA

Protein sequence

MGTRAFCSHGYYCLACCWVEDLKKITFGSISPAVVLKLFAAPMAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCPICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGNRPAGNSSASGQGEISIPIDQIS
Homology
[Close]
BLAST of Carg02157 vs. NCBI nr
Match: XP_022938777.1 (RING-H2 finger protein ATL74-like [Cucurbita moschata])

HSP 1 Score: 324.7 bits (831), Expect = 2.7e-85
Identity = 200/202 (99.01%), Postives = 200/202 (99.01%), Query Frame = 0 

Query: 43  MAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDXXXXXXXXXXXXXXXXXX 102
           MAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFD XXXXXXXXXXXXXXXXX
Sbjct: 1   MAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDTXXXXXXXXXXXXXXXXX 60

Query: 103 XXXXXXXXXXXXXXXXXFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP 162
           XXXXXXXXXXXXXXXX FETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP
Sbjct: 61  XXXXXXXXXXXXXXXXSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP 120

Query: 163 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN 222
           ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN
Sbjct: 121 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN 180

Query: 223 RPAGNSSASGQGEISIPIDQIS 245
           RPAGNSSASGQGEISIPIDQIS
Sbjct: 181 RPAGNSSASGQGEISIPIDQIS 202

[Close]
BLAST of Carg02157 vs. NCBI nr
Match: XP_023550807.1 (RING-H2 finger protein ATL74-like [Cucurbita pepo subsp. pepo] >XP_023550808.1 RING-H2 finger protein ATL74-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 324.7 bits (831), Expect = 2.7e-85
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0 

Query: 43  MAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDXXXXXXXXXXXXXXXXXX 102
           MAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDXXXXXXXXXXXXXXXXXX
Sbjct: 1   MAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDXXXXXXXXXXXXXXXXXX 60

Query: 103 XXXXXXXXXXXXXXXXXFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP 162
           XXXXXXXXXXXXXXXXXFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP
Sbjct: 61  XXXXXXXXXXXXXXXXXFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP 120

Query: 163 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN 222
           ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN
Sbjct: 121 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN 180

Query: 223 RPAGNSSASGQGEISIPIDQIS 245
           RPAGNSSASGQGEISIPIDQIS
Sbjct: 181 RPAGNSSASGQGEISIPIDQIS 202

[Close]
BLAST of Carg02157 vs. NCBI nr
Match: XP_022993116.1 (RING-H2 finger protein ATL74-like [Cucurbita maxima])

HSP 1 Score: 322.8 bits (826), Expect = 1.0e-84
Identity = 201/202 (99.50%), Postives = 201/202 (99.50%), Query Frame = 0 

Query: 43  MAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDXXXXXXXXXXXXXXXXXX 102
           MAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDXXXXXXXXXXXXXXXXXX
Sbjct: 1   MAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDXXXXXXXXXXXXXXXXXX 60

Query: 103 XXXXXXXXXXXXXXXXXFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP 162
           XXXXXXXXXXXXXXXXXFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP
Sbjct: 61  XXXXXXXXXXXXXXXXXFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP 120

Query: 163 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN 222
           ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN
Sbjct: 121 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN 180

Query: 223 RPAGNSSASGQGEISIPIDQIS 245
           RPAGN SASGQGEISIPIDQIS
Sbjct: 181 RPAGNPSASGQGEISIPIDQIS 202

[Close]
BLAST of Carg02157 vs. NCBI nr
Match: XP_022134542.1 (RING-H2 finger protein ATL74 [Momordica charantia])

HSP 1 Score: 259.2 bits (661), Expect = 1.4e-65
Identity = 161/192 (83.85%), Postives = 170/192 (88.54%), Query Frame = 0 

Query: 43  MAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDXXXXXXXXXXXXXXXXXX 102
           MAM SDHHR RPHR LLD + T  PSNG+RTR+SY+NEANFD     XXXXXXXXXXXXX
Sbjct: 1   MAMASDHHRHRPHRFLLDGDATAPPSNGNRTRSSYSNEANFDTNMVIXXXXXXXXXXXXX 60

Query: 103 XXXXXXXXXXXXXXXXXFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP 162
           XXXXXXXXXXXXXXXX FET GGT++RLAATGLKKSALR++PV VYGSESGL IRETDCP
Sbjct: 61  XXXXXXXXXXXXXXXXAFETAGGTSTRLAATGLKKSALRQIPVAVYGSESGLEIRETDCP 120

Query: 163 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN 222
           ICLGDFIAGEKIKVLPKCNH FHVRCIDTWLASHSSCPTCRQSL EQQS SES  A+AGN
Sbjct: 121 ICLGDFIAGEKIKVLPKCNHEFHVRCIDTWLASHSSCPTCRQSLLEQQSCSESAVAEAGN 180

Query: 223 RPAGNSSASGQG 235
           RPAGNSSA GQG
Sbjct: 181 RPAGNSSAGGQG 192

[Close]
BLAST of Carg02157 vs. NCBI nr
Match: KGN45834.1 (hypothetical protein Csa_6G014550 [Cucumis sativus])

HSP 1 Score: 233.8 bits (595), Expect = 6.2e-58
Identity = 157/202 (77.72%), Postives = 166/202 (82.18%), Query Frame = 0 

Query: 43  MAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDXXXXXXXXXXXXXXXXXX 102
           M M S+HHRPRP RLLLD +TT  PSNGSRTRNSY       XXXXXXXXXXXXXXXXXX
Sbjct: 1   MRMESNHHRPRPPRLLLDPDTTAPPSNGSRTRNSYNXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 103 XXXXXXXXXXXXXXXXXFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP 162
           XXXXXXXXXXXXXXX  FETGGGTASRL ATGLKKSALR++PV VYGSE+GL IRETDCP
Sbjct: 61  XXXXXXXXXXXXXXXFAFETGGGTASRLTATGLKKSALRQIPVAVYGSETGLEIRETDCP 120

Query: 163 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN 222
           ICLGDF+AGEKIK+LPKCNHGFHVRCIDTWLASHSSCPTCRQSL EQQS SES       
Sbjct: 121 ICLGDFMAGEKIKILPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSVSESXXXXXXX 180

Query: 223 RPAGNSSASGQGEISIPIDQIS 245
                  ASGQGEISI +D I+
Sbjct: 181 XXXXXXXASGQGEISITVDGIT 202

[Close]
BLAST of Carg02157 vs. TAIR10
Match: AT3G10910.1 (RING/U-box superfamily protein)

HSP 1 Score: 121.3 bits (303), Expect = 8.1e-28
Identity = 55/80 (68.75%), Postives = 66/80 (82.50%), Query Frame = 0 

Query: 131 AATGLKKSALRKLPVTVYGSESGLGIRETDCPICLGDFIAGEKIKVLPKCNHGFHVRCID 190
           AATGLKK AL+++PV +YGS   + ++ T+C ICLGDF  GEK++VLPKCNHGFHVRCID
Sbjct: 85  AATGLKKQALKQIPVGLYGS-GIIDMKATECLICLGDFEDGEKVRVLPKCNHGFHVRCID 144

Query: 191 TWLASHSSCPTCRQSLFEQQ 211
           TWL S SSCPTCRQSL  +Q
Sbjct: 145 TWLLSRSSCPTCRQSLLLEQ 163

[Close]
BLAST of Carg02157 vs. TAIR10
Match: AT5G05280.1 (RING/U-box superfamily protein)

HSP 1 Score: 117.9 bits (294), Expect = 9.0e-27
Identity = 52/85 (61.18%), Postives = 65/85 (76.47%), Query Frame = 0 

Query: 132 ATGLKKSALRKLPVTVYGSESGLGIRETDCPICLGDFIAGEKIKVLPKCNHGFHVRCIDT 191
           A G+KK AL+ +PV  Y  E  L ++ T+C ICLGDF+ GE ++VLPKCNHGFHV+CIDT
Sbjct: 86  AKGIKKRALKVIPVDSYSPE--LKMKATECLICLGDFVEGETVRVLPKCNHGFHVKCIDT 145

Query: 192 WLASHSSCPTCRQSLFEQQSASEST 217
           WL SHSSCPTCRQSL E Q+ +  +
Sbjct: 146 WLLSHSSCPTCRQSLLEHQTPANGS 168

[Close]
BLAST of Carg02157 vs. TAIR10
Match: AT5G01880.1 (RING/U-box superfamily protein)

HSP 1 Score: 108.2 bits (269), Expect = 7.1e-24
Identity = 93/154 (60.39%), Postives = 109/154 (70.78%), Query Frame = 0 

Query: 55  HRLLLDANTTEAPSNGSRTRNSYTNEANFDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 114
           HRLLL+++     ++GS   + YT + NF XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 2   HRLLLESHGGGNETSGSGGGDGYTRDMNFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 61

Query: 115 XXXXXFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCPICLGDFIAGEKI 174
           XXX       GT +  A  GLKK  L+K PV  YGS   + I  T+C ICLG+F  GE++
Sbjct: 62  XXXLSSSAAAGTVADRA--GLKKRELKKFPVAEYGS-GEVKIAATECAICLGEFADGERV 121

Query: 175 KVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFE 209
           +VLP CNH FH+ CIDTWL SHSSCP CR SL E
Sbjct: 122 RVLPPCNHSFHMSCIDTWLVSHSSCPNCRHSLIE 152

[Close]
BLAST of Carg02157 vs. TAIR10
Match: AT1G49220.1 (RING/U-box superfamily protein)

HSP 1 Score: 101.7 bits (252), Expect = 6.7e-22
Identity = 45/89 (50.56%), Postives = 60/89 (67.42%), Query Frame = 0 

Query: 134 GLKKSALRKLPVTVYGSESGLGIRETDCPICLGDFIAGEKIKVLPKCNHGFHVRCIDTWL 193
           G+KK ALR  PV  Y  E  L   + +C ICL DF++GE++++LPKCNHGFHVRCID WL
Sbjct: 108 GIKKKALRMFPVVSYSPEMNLPGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWL 167

Query: 194 ASHSSCPTCRQSLFE--QQSASESTEADA 221
             H +CP CR  L E  Q+   + ++AD+
Sbjct: 168 QQHLTCPKCRNCLVETCQKILGDFSQADS 196

[Close]
BLAST of Carg02157 vs. TAIR10
Match: AT1G49230.1 (RING/U-box superfamily protein)

HSP 1 Score: 101.3 bits (251), Expect = 8.7e-22
Identity = 53/121 (43.80%), Postives = 71/121 (58.68%), Query Frame = 0 

Query: 121 ETGGGT-ASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCPICLGDFIAGEKIKVLPK 180
           E GG     RL  TG+K+ AL+      Y +E  L   +T+C ICL +F+A E++K+LP 
Sbjct: 90  EAGGDNYPVRLTNTGVKRKALKSFQTVSYSTELNLPGLDTECAICLSEFVAEERVKLLPT 149

Query: 181 CNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGNRPAGNSSASGQGEISIP 240
           C+HGFHVRCID WL+SHSSCPTCR  L +    +    AD     + NS+   Q  I + 
Sbjct: 150 CHHGFHVRCIDKWLSSHSSCPTCRHCLIQ----TCEKIADCSQTSSLNSTQPPQDSIILQ 206

[Close]
BLAST of Carg02157 vs. Swiss-Prot
Match: sp|Q9SG96|ATL72_ARATH (RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.5e-26
Identity = 55/80 (68.75%), Postives = 66/80 (82.50%), Query Frame = 0 

Query: 131 AATGLKKSALRKLPVTVYGSESGLGIRETDCPICLGDFIAGEKIKVLPKCNHGFHVRCID 190
           AATGLKK AL+++PV +YGS   + ++ T+C ICLGDF  GEK++VLPKCNHGFHVRCID
Sbjct: 85  AATGLKKQALKQIPVGLYGS-GIIDMKATECLICLGDFEDGEKVRVLPKCNHGFHVRCID 144

Query: 191 TWLASHSSCPTCRQSLFEQQ 211
           TWL S SSCPTCRQSL  +Q
Sbjct: 145 TWLLSRSSCPTCRQSLLLEQ 163

[Close]
BLAST of Carg02157 vs. Swiss-Prot
Match: sp|Q9FLC6|ATL73_ARATH (RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.6e-25
Identity = 52/85 (61.18%), Postives = 65/85 (76.47%), Query Frame = 0 

Query: 132 ATGLKKSALRKLPVTVYGSESGLGIRETDCPICLGDFIAGEKIKVLPKCNHGFHVRCIDT 191
           A G+KK AL+ +PV  Y  E  L ++ T+C ICLGDF+ GE ++VLPKCNHGFHV+CIDT
Sbjct: 86  AKGIKKRALKVIPVDSYSPE--LKMKATECLICLGDFVEGETVRVLPKCNHGFHVKCIDT 145

Query: 192 WLASHSSCPTCRQSLFEQQSASEST 217
           WL SHSSCPTCRQSL E Q+ +  +
Sbjct: 146 WLLSHSSCPTCRQSLLEHQTPANGS 168

[Close]
BLAST of Carg02157 vs. Swiss-Prot
Match: sp|Q9LZV8|ATL74_ARATH (RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.3e-22
Identity = 93/154 (60.39%), Postives = 109/154 (70.78%), Query Frame = 0 

Query: 55  HRLLLDANTTEAPSNGSRTRNSYTNEANFDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 114
           HRLLL+++     ++GS   + YT + NF XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 2   HRLLLESHGGGNETSGSGGGDGYTRDMNFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 61

Query: 115 XXXXXFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCPICLGDFIAGEKI 174
           XXX       GT +  A  GLKK  L+K PV  YGS   + I  T+C ICLG+F  GE++
Sbjct: 62  XXXLSSSAAAGTVADRA--GLKKRELKKFPVAEYGS-GEVKIAATECAICLGEFADGERV 121

Query: 175 KVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFE 209
           +VLP CNH FH+ CIDTWL SHSSCP CR SL E
Sbjct: 122 RVLPPCNHSFHMSCIDTWLVSHSSCPNCRHSLIE 152

[Close]
BLAST of Carg02157 vs. Swiss-Prot
Match: sp|P0C034|ATL10_ARATH (RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.2e-20
Identity = 45/89 (50.56%), Postives = 60/89 (67.42%), Query Frame = 0 

Query: 134 GLKKSALRKLPVTVYGSESGLGIRETDCPICLGDFIAGEKIKVLPKCNHGFHVRCIDTWL 193
           G+KK ALR  PV  Y  E  L   + +C ICL DF++GE++++LPKCNHGFHVRCID WL
Sbjct: 108 GIKKKALRMFPVVSYSPEMNLPGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWL 167

Query: 194 ASHSSCPTCRQSLFE--QQSASESTEADA 221
             H +CP CR  L E  Q+   + ++AD+
Sbjct: 168 QQHLTCPKCRNCLVETCQKILGDFSQADS 196

[Close]
BLAST of Carg02157 vs. Swiss-Prot
Match: sp|Q6NQG7|ATL78_ARATH (RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.6e-20
Identity = 53/121 (43.80%), Postives = 71/121 (58.68%), Query Frame = 0 

Query: 121 ETGGGT-ASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCPICLGDFIAGEKIKVLPK 180
           E GG     RL  TG+K+ AL+      Y +E  L   +T+C ICL +F+A E++K+LP 
Sbjct: 90  EAGGDNYPVRLTNTGVKRKALKSFQTVSYSTELNLPGLDTECAICLSEFVAEERVKLLPT 149

Query: 181 CNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGNRPAGNSSASGQGEISIP 240
           C+HGFHVRCID WL+SHSSCPTCR  L +    +    AD     + NS+   Q  I + 
Sbjct: 150 CHHGFHVRCIDKWLSSHSSCPTCRHCLIQ----TCEKIADCSQTSSLNSTQPPQDSIILQ 206

[Close]
BLAST of Carg02157 vs. TrEMBL
Match: tr|A0A0A0KAH2|A0A0A0KAH2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014550 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 4.1e-58
Identity = 157/202 (77.72%), Postives = 166/202 (82.18%), Query Frame = 0 

Query: 43  MAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDXXXXXXXXXXXXXXXXXX 102
           M M S+HHRPRP RLLLD +TT  PSNGSRTRNSY       XXXXXXXXXXXXXXXXXX
Sbjct: 1   MRMESNHHRPRPPRLLLDPDTTAPPSNGSRTRNSYNXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 103 XXXXXXXXXXXXXXXXXFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP 162
           XXXXXXXXXXXXXXX  FETGGGTASRL ATGLKKSALR++PV VYGSE+GL IRETDCP
Sbjct: 61  XXXXXXXXXXXXXXXFAFETGGGTASRLTATGLKKSALRQIPVAVYGSETGLEIRETDCP 120

Query: 163 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN 222
           ICLGDF+AGEKIK+LPKCNHGFHVRCIDTWLASHSSCPTCRQSL EQQS SES       
Sbjct: 121 ICLGDFMAGEKIKILPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSVSESXXXXXXX 180

Query: 223 RPAGNSSASGQGEISIPIDQIS 245
                  ASGQGEISI +D I+
Sbjct: 181 XXXXXXXASGQGEISITVDGIT 202

[Close]
BLAST of Carg02157 vs. TrEMBL
Match: tr|A0A2C9VLD0|A0A2C9VLD0_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_07G140800 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 1.8e-45
Identity = 133/193 (68.91%), Postives = 159/193 (82.38%), Query Frame = 0 

Query: 53  RPHRLLLDA-NTTEAPSNGSRTRNSYTNEANFDXXXXXXXXXXXXXXXXXXXXXXXXXXX 112
           RPHRLLLD  ++T AP+NGSR+RNSYT+EANFD    XXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 7   RPHRLLLDTESSTPAPANGSRSRNSYTSEANFDTNMVXXXXXXXXXXXXXXXXXXXXXXX 66

Query: 113 XXXXXXXXFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCPICLGDFIAG 172
           XXXXXX  FET    A+RLAATGLKKSALR++PV +YGS +G+ I+ TDC ICLG+F+ G
Sbjct: 67  XXXXXXFAFETPDEAAARLAATGLKKSALRQIPVVIYGS-AGIHIKATDCAICLGEFMDG 126

Query: 173 EKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSA-SESTEADAGNRPAGNSSA 232
           EK++VLPKC+HGFHVRCIDTWL SHSSCPTCRQSL E  +A S+  EADAG R  GN +A
Sbjct: 127 EKVRVLPKCSHGFHVRCIDTWLGSHSSCPTCRQSLLEAPAASSDGAEADAGIRIHGNGAA 186

Query: 233 SGQGEISIPIDQI 244
           + Q ++S+  D++
Sbjct: 187 A-QSDVSMAADEV 197

[Close]
BLAST of Carg02157 vs. TrEMBL
Match: tr|A0A1U8IGK0|A0A1U8IGK0_GOSHI (RING-H2 finger protein ATL72-like OS=Gossypium hirsutum OX=3635 GN=LOC107896558 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 4.4e-44
Identity = 134/211 (63.51%), Postives = 161/211 (76.30%), Query Frame = 0 

Query: 38  LFAAPMAMVSDHHRPRPHRLLLDANTTEAPS--NGSRTRNSYTNEANFDXXXXXXXXXXX 97
           +  A  AMV+  +  RPHRLLLD     +PS  NGSRTRN++ NEANFD     XXXXXX
Sbjct: 1   MMQAKTAMVTTLYH-RPHRLLLDTQPNASPSLPNGSRTRNAFANEANFDTNMVIXXXXXX 60

Query: 98  XXXXXXXXXXXXXXXXXXXXXXXXFETGGGTASRL-AATGLKKSALRKLPVTVYGSESGL 157
           XXXXXXXXXXXXXXXXXXXXXXXX +    TA+RL AATGLKKSALR+LPV VYG  SG+
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXLDATEETAARLAAATGLKKSALRRLPVAVYG--SGM 120

Query: 158 GIRETDCPICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASE 217
            ++ T+CPICLG+F+ GEK++VLPKCNHGFHVRCIDTWL SHSSCPTCRQSL +Q ++S 
Sbjct: 121 DMKATECPICLGEFMGGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPTCRQSLLDQATSSS 180

Query: 218 --STEADAGNRPAGNSSASGQGEISIPIDQI 244
             + E + G RP GNSS   Q ++ +P D++
Sbjct: 181 DGAVEIENGIRPHGNSSGGQQADVPVPADEV 208

[Close]
BLAST of Carg02157 vs. TrEMBL
Match: tr|A0A2P5WW94|A0A2P5WW94_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA25339 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 4.4e-44
Identity = 135/211 (63.98%), Postives = 162/211 (76.78%), Query Frame = 0 

Query: 38  LFAAPMAMVSDHHRPRPHRLLLDANTTEAPS--NGSRTRNSYTNEANFDXXXXXXXXXXX 97
           +  A  AMV+  +  RPHRLLLD     +PS  NGSRTRN++ NEANFD    XXXXXXX
Sbjct: 1   MMQAKTAMVTTLYH-RPHRLLLDTQPNASPSLPNGSRTRNAFANEANFDTNMVXXXXXXX 60

Query: 98  XXXXXXXXXXXXXXXXXXXXXXXXFETGGGTASRL-AATGLKKSALRKLPVTVYGSESGL 157
           XXXXXXXXXXXXXXXXXXXXXXXX +    TA+RL AATGLKKSALR+LPV VYG  SG+
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXLDATEETAARLAAATGLKKSALRRLPVAVYG--SGM 120

Query: 158 GIRETDCPICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASE 217
            ++ T+CPICLG+F+ GEK++VLPKCNHGFHVRCIDTWL SHSSCPTCRQSL +Q ++S 
Sbjct: 121 DMKATECPICLGEFMGGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPTCRQSLLDQATSSS 180

Query: 218 --STEADAGNRPAGNSSASGQGEISIPIDQI 244
             + E + G RP GNSS   Q ++ +P D++
Sbjct: 181 DGAVEIENGIRPHGNSSGGQQADVPVPADEV 208

[Close]
BLAST of Carg02157 vs. TrEMBL
Match: tr|A0A1U8KEI9|A0A1U8KEI9_GOSHI (RING-H2 finger protein ATL72 OS=Gossypium hirsutum OX=3635 GN=LOC107916283 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 7.5e-44
Identity = 135/211 (63.98%), Postives = 162/211 (76.78%), Query Frame = 0 

Query: 38  LFAAPMAMVSDHHRPRPHRLLLDANTTEAPS--NGSRTRNSYTNEANFDXXXXXXXXXXX 97
           +  A  AMV+  +  RPHRLLLD     +PS  NGSRTRN++ NEANFD    XXXXXXX
Sbjct: 1   MMQAKTAMVTTLYH-RPHRLLLDTQPNASPSLPNGSRTRNAFANEANFDTNMVXXXXXXX 60

Query: 98  XXXXXXXXXXXXXXXXXXXXXXXXFETGGGTASRL-AATGLKKSALRKLPVTVYGSESGL 157
           XXXXXXXXXXXXXXXXXXXXXXXX +    TA+RL AATGLKKSALR+LPV VYG  SG+
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXLDATEETAARLAAATGLKKSALRRLPVAVYG--SGM 120

Query: 158 GIRETDCPICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASE 217
            ++ T+CPICLG+F+ GEK++VLPKCNHGFHVRCIDTWL SHSSCPTCRQSL +Q ++S 
Sbjct: 121 DMKATECPICLGEFMDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPTCRQSLLDQATSSS 180

Query: 218 --STEADAGNRPAGNSSASGQGEISIPIDQI 244
             + E + G RP GNSS   Q ++ +P D++
Sbjct: 181 DGAVEIENGIRPHGNSSGGQQADVPVPADEV 208

The following BLAST results are available for this feature:
BLAST of Carg02157 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022938777.12.7e-8599.01RING-H2 finger protein ATL74-like [Cucurbita moschata][more]
XP_023550807.12.7e-85100.00RING-H2 finger protein ATL74-like [Cucurbita pepo subsp. pepo] >XP_023550808.1 R... [more]
XP_022993116.11.0e-8499.50RING-H2 finger protein ATL74-like [Cucurbita maxima][more]
XP_022134542.11.4e-6583.85RING-H2 finger protein ATL74 [Momordica charantia][more]
KGN45834.16.2e-5877.72hypothetical protein Csa_6G014550 [Cucumis sativus][more]
BLAST of Carg02157 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G10910.18.1e-2868.75RING/U-box superfamily protein[more]
AT5G05280.19.0e-2761.18RING/U-box superfamily protein[more]
AT5G01880.17.1e-2460.39RING/U-box superfamily protein[more]
AT1G49220.16.7e-2250.56RING/U-box superfamily protein[more]
AT1G49230.18.7e-2243.80RING/U-box superfamily protein[more]
BLAST of Carg02157 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9SG96|ATL72_ARATH1.5e-2668.75RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1[more]
sp|Q9FLC6|ATL73_ARATH1.6e-2561.18RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1[more]
sp|Q9LZV8|ATL74_ARATH1.3e-2260.39RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1[more]
sp|P0C034|ATL10_ARATH1.2e-2050.56RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1[more]
sp|Q6NQG7|ATL78_ARATH1.6e-2043.80RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1[more]
BLAST of Carg02157 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KAH2|A0A0A0KAH2_CUCSA4.1e-5877.72Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014550 PE=4 SV=1[more]
tr|A0A2C9VLD0|A0A2C9VLD0_MANES1.8e-4568.91Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_07G140800 PE=4 SV=... [more]
tr|A0A1U8IGK0|A0A1U8IGK0_GOSHI4.4e-4463.51RING-H2 finger protein ATL72-like OS=Gossypium hirsutum OX=3635 GN=LOC107896558 ... [more]
tr|A0A2P5WW94|A0A2P5WW94_GOSBA4.4e-4463.98Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA25339 PE=4 SV... [more]
tr|A0A1U8KEI9|A0A1U8KEI9_GOSHI7.5e-4463.98RING-H2 finger protein ATL72 OS=Gossypium hirsutum OX=3635 GN=LOC107916283 PE=4 ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg02157-RACarg02157-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 161..202
e-value: 1.0E-7
score: 41.7
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 160..203
e-value: 1.7E-13
score: 50.6
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 161..203
score: 12.106
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 125..208
e-value: 1.3E-21
score: 78.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 213..244
NoneNo IPR availablePANTHERPTHR14155:SF209RING-H2 FINGER PROTEIN ATL72-RELATEDcoord: 55..221
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 55..221
NoneNo IPR availableCDDcd16454RING-H2_PA-TM-RINGcoord: 160..203
e-value: 7.60176E-16
score: 68.0973
NoneNo IPR availableSUPERFAMILYSSF57850RING/U-boxcoord: 155..209

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg02157Cla016422Watermelon (97103) v1carwmB0260
Carg02157Csa6G014550Cucumber (Chinese Long) v2carcuB0297
Carg02157MELO3C020006Melon (DHL92) v3.5.1carmeB0269
Carg02157ClCG11G005680Watermelon (Charleston Gray)carwcgB0255
Carg02157CSPI06G02140Wild cucumber (PI 183967)carcpiB0301
Carg02157CSPI04G16550Wild cucumber (PI 183967)carcpiB0294
Carg02157Cucsa.326000Cucumber (Gy14) v1carcgyB0319
Carg02157Cucsa.130520Cucumber (Gy14) v1carcgyB0306
Carg02157CmaCh15G001660Cucurbita maxima (Rimu)carcmaB0362
Carg02157CmaCh04G028640Cucurbita maxima (Rimu)carcmaB0374
Carg02157CmoCh04G029930Cucurbita moschata (Rifu)carcmoB0370
Carg02157CmoCh15G001790Cucurbita moschata (Rifu)carcmoB0362
Carg02157Lsi03G002640Bottle gourd (USVL1VR-Ls)carlsiB236
Carg02157Cp4.1LG13g07520Cucurbita pepo (Zucchini)carcpeB0366
Carg02157CsGy4G015870Cucumber (Gy14) v2carcgybB0277
Carg02157CsGy6G002220Cucumber (Gy14) v2carcgybB0284
Carg02157MELO3C020006.2Melon (DHL92) v3.6.1carmedB0280
Carg02157MELO3C025221.2Melon (DHL92) v3.6.1carmedB0285
Carg02157CsaV3_6G002290Cucumber (Chinese Long) v3carcucB0300
Carg02157CsaV3_4G027170Cucumber (Chinese Long) v3carcucB0293
Carg02157Cla97C11G212610Watermelon (97103) v2carwmbB0269
Carg02157Bhi04G001836Wax gourdcarwgoB0349
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg02157Carg05940Silver-seed gourdcarcarB020
The following block(s) are covering this gene:
GeneOrganismBlock
Carg02157Bottle gourd (USVL1VR-Ls)carlsiB231
Carg02157Bottle gourd (USVL1VR-Ls)carlsiB242
Carg02157Watermelon (Charleston Gray)carwcgB0257
Carg02157Watermelon (Charleston Gray)carwcgB0260
Carg02157Watermelon (97103) v1carwmB0254
Carg02157Watermelon (97103) v1carwmB0259
Carg02157Watermelon (97103) v2carwmbB0272
Carg02157Watermelon (97103) v2carwmbB0276
Carg02157Wax gourdcarwgoB0351
Carg02157Silver-seed gourdcarcarB305
Carg02157Cucurbita maxima (Rimu)carcmaB0366
Carg02157Cucurbita maxima (Rimu)carcmaB0375
Carg02157Cucurbita moschata (Rifu)carcmoB0363
Carg02157Cucurbita moschata (Rifu)carcmoB0373
Carg02157Cucurbita pepo (Zucchini)carcpeB0365
Carg02157Cucurbita pepo (Zucchini)carcpeB0374
Carg02157Cucumber (Chinese Long) v2carcuB0290