CsaV3_4G027170 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G027170
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionRING-H2 finger protein ATL74
Locationchr4 : 16341721 .. 16342571 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTTTTCCCAATATTAAATTAGGTATACATTCCATCATCTTCAACCATAACACTCTACAACTTTAAATATAAACTACCTGAGAAACAAATCAAATCCCAACCCATTTAAATTCCACAAAACTTCCCATACTTTTAATGTCCATTTCTTCACAAACTATATCCCCAAATACCCACCACACCCCCACCAAGTATGTTCAAGGTCCACCGCCACCAGCATTTCCAGCCCACACGACTCTCGACAACAACATGGTGATCCTCTTAGCGGCTCTGCTCTATGCCCTCGTCGGCGCACTCGTCATGAACTCAATTCTCCGCTGCATATGGCGGCGGTGGTGGAGCGCCGCCGCGGCAAGAGTCGAGAGGCAGGAATTGGAAGAGATTCCGGTGGCGGTTTACGAAGGGGAAGGGAGAATGAAAATCAGAGGTACGGAATGTGCGATTTGTTTAGGTGAATTCGAAAGTGGTGAGGGTTTGAGGATTATGCCCAAATGTAACCATGGATTTCATGTTCACTGTATTGATGCTTGGTTAGTTTCCCATTCCTCTTGCCCTAATTGTCGCCATAGTCTGCCAGTGAAGACGGTAGCGGATGGTGGCAGTGGCGGAGTTGGTGAGGTGCGGCGGGCGGGGAATGATGGGTCGGATGATATAATTATAATACTGATCGCAGCCATTTAGAAGTGGATGGATGAAGGTAATTGGCAATTGGGATCAATGAACTCATCAATTATTAAATGCATTTTACTCTTTTTCTAATTTATTGTCAAGCTATGTTTATTATGTAGGCTTATTTTGAAAAGAAAGTTTTAATCAAAGTAGTTAAAAGATGGATGGAAATATTACTCAACTAA

mRNA sequence

ATGTCCATTTCTTCACAAACTATATCCCCAAATACCCACCACACCCCCACCAAGTATGTTCAAGGTCCACCGCCACCAGCATTTCCAGCCCACACGACTCTCGACAACAACATGGTGATCCTCTTAGCGGCTCTGCTCTATGCCCTCGTCGGCGCACTCGTCATGAACTCAATTCTCCGCTGCATATGGCGGCGGTGGTGGAGCGCCGCCGCGGCAAGAGTCGAGAGGCAGGAATTGGAAGAGATTCCGGTGGCGGTTTACGAAGGGGAAGGGAGAATGAAAATCAGAGGTACGGAATGTGCGATTTGTTTAGGTGAATTCGAAAGTGGTGAGGGTTTGAGGATTATGCCCAAATGTAACCATGGATTTCATGTTCACTGTATTGATGCTTGGTTAGTTTCCCATTCCTCTTGCCCTAATTGTCGCCATAGTCTGCCAGTGAAGACGGTAGCGGATGGTGGCAGTGGCGGAGTTGGTGAGGTGCGGCGGGCGGGGAATGATGGGTCGGATGATATAATTATAATACTGATCGCAGCCATTTAG

Coding sequence (CDS)

ATGTCCATTTCTTCACAAACTATATCCCCAAATACCCACCACACCCCCACCAAGTATGTTCAAGGTCCACCGCCACCAGCATTTCCAGCCCACACGACTCTCGACAACAACATGGTGATCCTCTTAGCGGCTCTGCTCTATGCCCTCGTCGGCGCACTCGTCATGAACTCAATTCTCCGCTGCATATGGCGGCGGTGGTGGAGCGCCGCCGCGGCAAGAGTCGAGAGGCAGGAATTGGAAGAGATTCCGGTGGCGGTTTACGAAGGGGAAGGGAGAATGAAAATCAGAGGTACGGAATGTGCGATTTGTTTAGGTGAATTCGAAAGTGGTGAGGGTTTGAGGATTATGCCCAAATGTAACCATGGATTTCATGTTCACTGTATTGATGCTTGGTTAGTTTCCCATTCCTCTTGCCCTAATTGTCGCCATAGTCTGCCAGTGAAGACGGTAGCGGATGGTGGCAGTGGCGGAGTTGGTGAGGTGCGGCGGGCGGGGAATGATGGGTCGGATGATATAATTATAATACTGATCGCAGCCATTTAG

Protein sequence

MSISSQTISPNTHHTPTKYVQGPPPPAFPAHTTLDNNMVILLAALLYALVGALVMNSILRCIWRRWWSAAAARVERQELEEIPVAVYEGEGRMKIRGTECAICLGEFESGEGLRIMPKCNHGFHVHCIDAWLVSHSSCPNCRHSLPVKTVADGGSGGVGEVRRAGNDGSDDIIIILIAAI
Homology
[Close]
BLAST of CsaV3_4G027170 vs. NCBI nr
Match: XP_011653722.1 (PREDICTED: RING-H2 finger protein ATL74 [Cucumis sativus] >KGN54449.1 hypothetical protein Csa_4G333870 [Cucumis sativus])

HSP 1 Score: 349.7 bits (896), Expect = 5.8e-93
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0 

Query: 1   MSISSQTISPNTHHTPTKYVQGPPPPAFPAHTTLDNNMVILLAXXXXXXXXXXXMNSILR 60
           MSISSQTISPNTHHTPTKYVQGPPPPAFPAHTTLDNNMVILLAXXXXXXXXXXXMNSILR
Sbjct: 1   MSISSQTISPNTHHTPTKYVQGPPPPAFPAHTTLDNNMVILLAXXXXXXXXXXXMNSILR 60

Query: 61  CIWRRWWSAAAARVERQELEEIPVAVYEGEGRMKIRGTECAICLGEFESGEGLRIMPKCN 120
           CIWRRWWSAAAARVERQELEEIPVAVYEGEGRMKIRGTECAICLGEFESGEGLRIMPKCN
Sbjct: 61  CIWRRWWSAAAARVERQELEEIPVAVYEGEGRMKIRGTECAICLGEFESGEGLRIMPKCN 120

Query: 121 HGFHVHCIDAWLVSHSSCPNCRHSLPVKTVADGGSGGVGEVRRAGNDGSDDIIIILIAAI 180
           HGFHVHCIDAWLVSHSSCPNCRHSLPVKTVADGGSGGVGEVRRAGNDGSDDIIIILIAAI
Sbjct: 121 HGFHVHCIDAWLVSHSSCPNCRHSLPVKTVADGGSGGVGEVRRAGNDGSDDIIIILIAAI 180

[Close]
BLAST of CsaV3_4G027170 vs. NCBI nr
Match: XP_008463261.1 (PREDICTED: RING-H2 finger protein ATL74 [Cucumis melo])

HSP 1 Score: 246.5 bits (628), Expect = 6.9e-62
Identity = 120/162 (74.07%), Postives = 132/162 (81.48%), Query Frame = 0 

Query: 25  PPAFPAHTTLDNNMVILLAXXXXXXXXXXXMNSILRCIWRRWWSAAAARVERQELEEIPV 84
           PP FPA T L NNMVI LA           +NSI+RC+WRRWWS AAARVERQELE IPV
Sbjct: 12  PPPFPAETNLGNNMVIGLAALLYALIGALVVNSIIRCVWRRWWS-AAARVERQELEAIPV 71

Query: 85  AVYEGEGRMKIRGTECAICLGEFESGEGLRIMPKCNHGFHVHCIDAWLVSHSSCPNCRHS 144
           AV+EGEGRM++RGTECAICLGEFESGE LRI+P+CNHGFHVHCIDAWLVSHSSCPNCRHS
Sbjct: 72  AVFEGEGRMRMRGTECAICLGEFESGEDLRILPQCNHGFHVHCIDAWLVSHSSCPNCRHS 131

Query: 145 LPVKTVADGGSGGVGEVRRAGNDG------SDDIIIILIAAI 181
           +P+KTV DGGSGG+ E+RR GN        SDDIIIILIAAI
Sbjct: 132 VPLKTVGDGGSGGISELRRPGNHRTHTGQLSDDIIIILIAAI 172

[Close]
BLAST of CsaV3_4G027170 vs. NCBI nr
Match: XP_022144089.1 (RING-H2 finger protein ATL74-like [Momordica charantia])

HSP 1 Score: 172.9 bits (437), Expect = 9.6e-40
Identity = 97/168 (57.74%), Postives = 112/168 (66.67%), Query Frame = 0 

Query: 23  PPPPAFPAHTTLDNNMVILLAXXXXXXXXXXXMNSILRCIWRRWW------SAAAARVER 82
           P PP+  +   LD N+VI+LA           +NSILRC+ RR W      SAA A V+R
Sbjct: 13  PSPPSNTSEKNLDFNVVIVLAALLCALVGALAVNSILRCVARRRWGELSRESAALAGVKR 72

Query: 83  Q-ELEEIPVAVYEGEGRMKIRGTECAICLGEFESGEGLRIMPKCNHGFHVHCIDAWLVSH 142
           + ELEEIPVAV+ G    +IRGTECAICLGEFE G+ LRI+P C+HGFHV+CID W VSH
Sbjct: 73  RGELEEIPVAVFAGAAEGRIRGTECAICLGEFEIGDDLRILPNCSHGFHVNCIDHWFVSH 132

Query: 143 SSCPNCRHSLPVKTVADGGSGGVGEVRRAGNDGSDDI---IIILIAAI 181
           SSCPNCRHSL  KT  DGG    GEVRR  N  S  +   IIILIAAI
Sbjct: 133 SSCPNCRHSLLQKTAEDGGG---GEVRRPENPDSGQLPGDIIILIAAI 177

[Close]
BLAST of CsaV3_4G027170 vs. NCBI nr
Match: XP_022157309.1 (RING-H2 finger protein ATL74-like [Momordica charantia])

HSP 1 Score: 133.3 bits (334), Expect = 8.5e-28
Identity = 65/128 (50.78%), Postives = 85/128 (66.41%), Query Frame = 0 

Query: 27  AFPAHTTLDNNMVILLAXXXXXXXXXXXMNSILRCIWRRWWS----AAAARVERQELEEI 86
           A+     LD NMV++LA           MNSI+RC+ R   S    AAA  +++++L +I
Sbjct: 28  AYVGEMNLDANMVVILAALSCALIGALGMNSIVRCVLRCSQSPEGAAAATGLKKRDLGQI 87

Query: 87  PVAVY-----EGEGRMKIRGTECAICLGEFESGEGLRIMPKCNHGFHVHCIDAWLVSHSS 146
           PV VY     +G   + I+GT+CAICLGEF+ G+ LR++P CNHGFHV CID WL+SHSS
Sbjct: 88  PVGVYGIGGGDGGNMVNIKGTDCAICLGEFQPGDKLRMLPVCNHGFHVRCIDTWLLSHSS 147

[Close]
BLAST of CsaV3_4G027170 vs. NCBI nr
Match: XP_002323073.2 (RING-H2 finger protein ATL74 [Populus trichocarpa] >PNS99442.1 hypothetical protein POPTR_016G136200v3 [Populus trichocarpa])

HSP 1 Score: 131.3 bits (329), Expect = 3.2e-27
Identity = 72/152 (47.37%), Postives = 88/152 (57.89%), Query Frame = 0 

Query: 32  TTLDNNMVILLAXXXXXXXXXXXMNSILRCIWR-------RWWSAAAAR-----VERQEL 91
           T  D NMVI+LA           +NSI+RC+ R            AAAR     +++++L
Sbjct: 32  TNFDTNMVIILAALLCALIGALGLNSIVRCLLRCSSRFALETTEEAAARLAATGLKKRDL 91

Query: 92  EEIPVAVYEGEGRMKIRGTECAICLGEFESGEGLRIMPKCNHGFHVHCIDAWLVSHSSCP 151
            +IPVA+Y   G   I  TEC ICLGEF  GE +R++PKCNHGFHV CID WL+SHSSCP
Sbjct: 92  RQIPVAIYGAGG--SISATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCP 151

Query: 152 NCRHSLPVKTVADGGSGGVGEVRRAGNDGSDD 172
           NCRHSL   T     SG   EV  A   G +D
Sbjct: 152 NCRHSLLEHTT---DSGAAQEVTGAARPGEND 178

[Close]
BLAST of CsaV3_4G027170 vs. TAIR10
Match: AT5G01880.1 (RING/U-box superfamily protein)

HSP 1 Score: 113.2 bits (282), Expect = 1.6e-25
Identity = 49/77 (63.64%), Postives = 60/77 (77.92%), Query Frame = 0 

Query: 69  AAAARVERQELEEIPVAVYEGEGRMKIRGTECAICLGEFESGEGLRIMPKCNHGFHVHCI 128
           A  A ++++EL++ PVA Y G G +KI  TECAICLGEF  GE +R++P CNH FH+ CI
Sbjct: 75  ADRAGLKKRELKKFPVAEY-GSGEVKIAATECAICLGEFADGERVRVLPPCNHSFHMSCI 134

Query: 129 DAWLVSHSSCPNCRHSL 146
           D WLVSHSSCPNCRHSL
Sbjct: 135 DTWLVSHSSCPNCRHSL 150

[Close]
BLAST of CsaV3_4G027170 vs. TAIR10
Match: AT3G10910.1 (RING/U-box superfamily protein)

HSP 1 Score: 109.0 bits (271), Expect = 3.1e-24
Identity = 46/77 (59.74%), Postives = 60/77 (77.92%), Query Frame = 0 

Query: 69  AAAARVERQELEEIPVAVYEGEGRMKIRGTECAICLGEFESGEGLRIMPKCNHGFHVHCI 128
           AAA  +++Q L++IPV +Y G G + ++ TEC ICLG+FE GE +R++PKCNHGFHV CI
Sbjct: 84  AAATGLKKQALKQIPVGLY-GSGIIDMKATECLICLGDFEDGEKVRVLPKCNHGFHVRCI 143

Query: 129 DAWLVSHSSCPNCRHSL 146
           D WL+S SSCP CR SL
Sbjct: 144 DTWLLSRSSCPTCRQSL 159

[Close]
BLAST of CsaV3_4G027170 vs. TAIR10
Match: AT5G05280.1 (RING/U-box superfamily protein)

HSP 1 Score: 101.3 bits (251), Expect = 6.5e-22
Identity = 47/88 (53.41%), Postives = 62/88 (70.45%), Query Frame = 0 

Query: 71  AARVERQELEEIPVAVYEGEGRMKIRGTECAICLGEFESGEGLRIMPKCNHGFHVHCIDA 130
           A  ++++ L+ IPV  Y  E  +K++ TEC ICLG+F  GE +R++PKCNHGFHV CID 
Sbjct: 86  AKGIKKRALKVIPVDSYSPE--LKMKATECLICLGDFVEGETVRVLPKCNHGFHVKCIDT 145

Query: 131 WLVSHSSCPNCRHS-LPVKTVADGGSGG 158
           WL+SHSSCP CR S L  +T A+G   G
Sbjct: 146 WLLSHSSCPTCRQSLLEHQTPANGSRRG 171

[Close]
BLAST of CsaV3_4G027170 vs. TAIR10
Match: AT1G49210.1 (RING/U-box superfamily protein)

HSP 1 Score: 97.4 bits (241), Expect = 9.3e-21
Identity = 51/147 (34.69%), Postives = 71/147 (48.30%), Query Frame = 0 

Query: 14  HTPTKYVQGPPPPAFPAHTTLDNNMVILLAXXXXXXXXXXXMNSILRCIWRRW------- 73
           H   +     P P       L  N+++LL+           ++ I+RC +RR        
Sbjct: 34  HNSLRVFAVAPSPLITHENNLKGNVLMLLSVLICGIICCLGLHYIIRCAFRRSSRFMISE 93

Query: 74  --------WSAAAARVERQELEEIPVAVYEGEGRMKIRGTECAICLGEFESGEGLRIMPK 133
                    S++   ++++ L   PV  Y  E  +   G EC ICL +F SGE LR++PK
Sbjct: 94  PISSLSTPRSSSNKGIKKKALRMFPVVSYSREMNLPGIGEECVICLSDFVSGEQLRLLPK 153

Query: 134 CNHGFHVHCIDAWLVSHSSCPNCRHSL 146
           CNHGFHV CID WL  H +CP CRH L
Sbjct: 154 CNHGFHVRCIDKWLQHHLTCPKCRHCL 180

[Close]
BLAST of CsaV3_4G027170 vs. TAIR10
Match: AT1G49200.1 (RING/U-box superfamily protein)

HSP 1 Score: 96.3 bits (238), Expect = 2.1e-20
Identity = 51/152 (33.55%), Postives = 74/152 (48.68%), Query Frame = 0 

Query: 9   SPNTHHTPTKYVQGPPPPAFPAHTTLDNNMVILLAXXXXXXXXXXXMNSILRCIWRRWWS 68
           +P  H+T   +    P P       L  N+++LL+           ++ I+RC +RR  S
Sbjct: 31  NPFDHNTQRAFAVA-PSPLITHENNLSGNVLMLLSVLICGIICCLGLHYIIRCAFRRTSS 90

Query: 69  ---------------AAAARVERQELEEIPVAVYEGEGRMKIRGTECAICLGEFESGEGL 128
                          ++   + ++ L   PV  Y  E  +   G EC ICL +F SGE +
Sbjct: 91  FMISEPIAGLSTPCGSSNKGINKKALRMFPVVSYSPEMNLPGLGEECVICLSDFVSGEQI 150

Query: 129 RIMPKCNHGFHVHCIDAWLVSHSSCPNCRHSL 146
           R++PKC+HGFHV CID WL  H +CP CRH L
Sbjct: 151 RMLPKCHHGFHVRCIDKWLQQHLTCPKCRHCL 181

[Close]
BLAST of CsaV3_4G027170 vs. Swiss-Prot
Match: sp|Q9LZV8|ATL74_ARATH (RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 3.0e-24
Identity = 49/77 (63.64%), Postives = 60/77 (77.92%), Query Frame = 0 

Query: 69  AAAARVERQELEEIPVAVYEGEGRMKIRGTECAICLGEFESGEGLRIMPKCNHGFHVHCI 128
           A  A ++++EL++ PVA Y G G +KI  TECAICLGEF  GE +R++P CNH FH+ CI
Sbjct: 75  ADRAGLKKRELKKFPVAEY-GSGEVKIAATECAICLGEFADGERVRVLPPCNHSFHMSCI 134

Query: 129 DAWLVSHSSCPNCRHSL 146
           D WLVSHSSCPNCRHSL
Sbjct: 135 DTWLVSHSSCPNCRHSL 150

[Close]
BLAST of CsaV3_4G027170 vs. Swiss-Prot
Match: sp|Q9SG96|ATL72_ARATH (RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 5.6e-23
Identity = 46/77 (59.74%), Postives = 60/77 (77.92%), Query Frame = 0 

Query: 69  AAAARVERQELEEIPVAVYEGEGRMKIRGTECAICLGEFESGEGLRIMPKCNHGFHVHCI 128
           AAA  +++Q L++IPV +Y G G + ++ TEC ICLG+FE GE +R++PKCNHGFHV CI
Sbjct: 84  AAATGLKKQALKQIPVGLY-GSGIIDMKATECLICLGDFEDGEKVRVLPKCNHGFHVRCI 143

Query: 129 DAWLVSHSSCPNCRHSL 146
           D WL+S SSCP CR SL
Sbjct: 144 DTWLLSRSSCPTCRQSL 159

[Close]
BLAST of CsaV3_4G027170 vs. Swiss-Prot
Match: sp|Q9FLC6|ATL73_ARATH (RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.2e-20
Identity = 47/88 (53.41%), Postives = 62/88 (70.45%), Query Frame = 0 

Query: 71  AARVERQELEEIPVAVYEGEGRMKIRGTECAICLGEFESGEGLRIMPKCNHGFHVHCIDA 130
           A  ++++ L+ IPV  Y  E  +K++ TEC ICLG+F  GE +R++PKCNHGFHV CID 
Sbjct: 86  AKGIKKRALKVIPVDSYSPE--LKMKATECLICLGDFVEGETVRVLPKCNHGFHVKCIDT 145

Query: 131 WLVSHSSCPNCRHS-LPVKTVADGGSGG 158
           WL+SHSSCP CR S L  +T A+G   G
Sbjct: 146 WLLSHSSCPTCRQSLLEHQTPANGSRRG 171

[Close]
BLAST of CsaV3_4G027170 vs. Swiss-Prot
Match: sp|Q6NML0|ATL76_ARATH (E3 ubiquitin-protein ligase ATL76 OS=Arabidopsis thaliana OX=3702 GN=ATL76 PE=1 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.7e-19
Identity = 51/147 (34.69%), Postives = 71/147 (48.30%), Query Frame = 0 

Query: 14  HTPTKYVQGPPPPAFPAHTTLDNNMVILLAXXXXXXXXXXXMNSILRCIWRRW------- 73
           H   +     P P       L  N+++LL+           ++ I+RC +RR        
Sbjct: 34  HNSLRVFAVAPSPLITHENNLKGNVLMLLSVLICGIICCLGLHYIIRCAFRRSSRFMISE 93

Query: 74  --------WSAAAARVERQELEEIPVAVYEGEGRMKIRGTECAICLGEFESGEGLRIMPK 133
                    S++   ++++ L   PV  Y  E  +   G EC ICL +F SGE LR++PK
Sbjct: 94  PISSLSTPRSSSNKGIKKKALRMFPVVSYSREMNLPGIGEECVICLSDFVSGEQLRLLPK 153

Query: 134 CNHGFHVHCIDAWLVSHSSCPNCRHSL 146
           CNHGFHV CID WL  H +CP CRH L
Sbjct: 154 CNHGFHVRCIDKWLQHHLTCPKCRHCL 180

[Close]
BLAST of CsaV3_4G027170 vs. Swiss-Prot
Match: sp|Q94BY6|ATL75_ARATH (RING-H2 finger protein ATL75 OS=Arabidopsis thaliana OX=3702 GN=ATL75 PE=2 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 3.8e-19
Identity = 51/152 (33.55%), Postives = 74/152 (48.68%), Query Frame = 0 

Query: 9   SPNTHHTPTKYVQGPPPPAFPAHTTLDNNMVILLAXXXXXXXXXXXMNSILRCIWRRWWS 68
           +P  H+T   +    P P       L  N+++LL+           ++ I+RC +RR  S
Sbjct: 31  NPFDHNTQRAFAVA-PSPLITHENNLSGNVLMLLSVLICGIICCLGLHYIIRCAFRRTSS 90

Query: 69  ---------------AAAARVERQELEEIPVAVYEGEGRMKIRGTECAICLGEFESGEGL 128
                          ++   + ++ L   PV  Y  E  +   G EC ICL +F SGE +
Sbjct: 91  FMISEPIAGLSTPCGSSNKGINKKALRMFPVVSYSPEMNLPGLGEECVICLSDFVSGEQI 150

Query: 129 RIMPKCNHGFHVHCIDAWLVSHSSCPNCRHSL 146
           R++PKC+HGFHV CID WL  H +CP CRH L
Sbjct: 151 RMLPKCHHGFHVRCIDKWLQQHLTCPKCRHCL 181

[Close]
BLAST of CsaV3_4G027170 vs. TrEMBL
Match: tr|A0A0A0L057|A0A0A0L057_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G333870 PE=4 SV=1)

HSP 1 Score: 349.7 bits (896), Expect = 3.8e-93
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0 

Query: 1   MSISSQTISPNTHHTPTKYVQGPPPPAFPAHTTLDNNMVILLAXXXXXXXXXXXMNSILR 60
           MSISSQTISPNTHHTPTKYVQGPPPPAFPAHTTLDNNMVILLAXXXXXXXXXXXMNSILR
Sbjct: 1   MSISSQTISPNTHHTPTKYVQGPPPPAFPAHTTLDNNMVILLAXXXXXXXXXXXMNSILR 60

Query: 61  CIWRRWWSAAAARVERQELEEIPVAVYEGEGRMKIRGTECAICLGEFESGEGLRIMPKCN 120
           CIWRRWWSAAAARVERQELEEIPVAVYEGEGRMKIRGTECAICLGEFESGEGLRIMPKCN
Sbjct: 61  CIWRRWWSAAAARVERQELEEIPVAVYEGEGRMKIRGTECAICLGEFESGEGLRIMPKCN 120

Query: 121 HGFHVHCIDAWLVSHSSCPNCRHSLPVKTVADGGSGGVGEVRRAGNDGSDDIIIILIAAI 180
           HGFHVHCIDAWLVSHSSCPNCRHSLPVKTVADGGSGGVGEVRRAGNDGSDDIIIILIAAI
Sbjct: 121 HGFHVHCIDAWLVSHSSCPNCRHSLPVKTVADGGSGGVGEVRRAGNDGSDDIIIILIAAI 180

[Close]
BLAST of CsaV3_4G027170 vs. TrEMBL
Match: tr|A0A1S3CKD5|A0A1S3CKD5_CUCME (RING-H2 finger protein ATL74 OS=Cucumis melo OX=3656 GN=LOC103501464 PE=4 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 4.5e-62
Identity = 120/162 (74.07%), Postives = 132/162 (81.48%), Query Frame = 0 

Query: 25  PPAFPAHTTLDNNMVILLAXXXXXXXXXXXMNSILRCIWRRWWSAAAARVERQELEEIPV 84
           PP FPA T L NNMVI LA           +NSI+RC+WRRWWS AAARVERQELE IPV
Sbjct: 12  PPPFPAETNLGNNMVIGLAALLYALIGALVVNSIIRCVWRRWWS-AAARVERQELEAIPV 71

Query: 85  AVYEGEGRMKIRGTECAICLGEFESGEGLRIMPKCNHGFHVHCIDAWLVSHSSCPNCRHS 144
           AV+EGEGRM++RGTECAICLGEFESGE LRI+P+CNHGFHVHCIDAWLVSHSSCPNCRHS
Sbjct: 72  AVFEGEGRMRMRGTECAICLGEFESGEDLRILPQCNHGFHVHCIDAWLVSHSSCPNCRHS 131

Query: 145 LPVKTVADGGSGGVGEVRRAGNDG------SDDIIIILIAAI 181
           +P+KTV DGGSGG+ E+RR GN        SDDIIIILIAAI
Sbjct: 132 VPLKTVGDGGSGGISELRRPGNHRTHTGQLSDDIIIILIAAI 172

[Close]
BLAST of CsaV3_4G027170 vs. TrEMBL
Match: tr|B9IGS7|B9IGS7_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_016G136200v3 PE=4 SV=2)

HSP 1 Score: 131.3 bits (329), Expect = 2.1e-27
Identity = 72/152 (47.37%), Postives = 88/152 (57.89%), Query Frame = 0 

Query: 32  TTLDNNMVILLAXXXXXXXXXXXMNSILRCIWR-------RWWSAAAAR-----VERQEL 91
           T  D NMVI+LA           +NSI+RC+ R            AAAR     +++++L
Sbjct: 32  TNFDTNMVIILAALLCALIGALGLNSIVRCLLRCSSRFALETTEEAAARLAATGLKKRDL 91

Query: 92  EEIPVAVYEGEGRMKIRGTECAICLGEFESGEGLRIMPKCNHGFHVHCIDAWLVSHSSCP 151
            +IPVA+Y   G   I  TEC ICLGEF  GE +R++PKCNHGFHV CID WL+SHSSCP
Sbjct: 92  RQIPVAIYGAGG--SISATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCP 151

Query: 152 NCRHSLPVKTVADGGSGGVGEVRRAGNDGSDD 172
           NCRHSL   T     SG   EV  A   G +D
Sbjct: 152 NCRHSLLEHTT---DSGAAQEVTGAARPGEND 178

[Close]
BLAST of CsaV3_4G027170 vs. TrEMBL
Match: tr|F6GXX0|F6GXX0_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_08s0058g01270 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 8.1e-27
Identity = 70/157 (44.59%), Postives = 90/157 (57.32%), Query Frame = 0 

Query: 27  AFPAHTTLDNNMVILLAXXXXXXXXXXXMNSILRCIWR-------RWWSAAAARVERQEL 86
           A+   T  D NMVI+LA           +NSI+RC  R            AA  ++++ L
Sbjct: 35  AYVNETNFDTNMVIILAALLCALIGALGLNSIVRCAMRCSRRLSPESQGQAATGLKKRAL 94

Query: 87  EEIPVAVYEGEGRMKIRGTECAICLGEFESGEGLRIMPKCNHGFHVHCIDAWLVSHSSCP 146
            +IPVAVY G G ++I  TEC ICLGEF  GE +R++PKCNHGFHV CID WLVSHSSCP
Sbjct: 95  RQIPVAVY-GPG-VEIPATECPICLGEFVQGEKVRVLPKCNHGFHVRCIDTWLVSHSSCP 154

Query: 147 NCRHSLPVKTVADGGSGGVGEVRRAGNDGSDDIIIIL 177
           NCRHSL  +      +G V   +   N  +    I++
Sbjct: 155 NCRHSLLERPTTSDAAGEVAPEQPQPNGSTHQGSIVI 189

[Close]
BLAST of CsaV3_4G027170 vs. TrEMBL
Match: tr|A0A2C9VA04|A0A2C9VA04_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_09G117400 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 3.1e-26
Identity = 68/142 (47.89%), Postives = 86/142 (60.56%), Query Frame = 0 

Query: 27  AFPAHTTLDNNMVILLAXXXXXXXXXXXMNSILRCIWR-------RWWSAAAAR-----V 86
           ++ + T  D N VI+LA           +NSI+RC  R            AAAR     +
Sbjct: 26  SYISDTNFDTNTVIILAALLCSVIVALGLNSIVRCALRCCRRFAFETPEQAAARLAATGL 85

Query: 87  ERQELEEIPVAVYEGEGRMKIRGTECAICLGEFESGEGLRIMPKCNHGFHVHCIDAWLVS 146
           ++++L +IPVAVY G+G     GTEC ICLGEF  GE +R++PKCNHGFHV CID WL+S
Sbjct: 86  KKRDLSQIPVAVY-GKGVNNFPGTECPICLGEFADGEKVRVLPKCNHGFHVRCIDTWLLS 145

Query: 147 HSSCPNCRHSLPVKTVADGGSG 157
           HSSCPNCR SL   T A  G+G
Sbjct: 146 HSSCPNCRLSLLEHTAAGSGAG 166

The following BLAST results are available for this feature:
BLAST of CsaV3_4G027170 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011653722.15.8e-93100.00PREDICTED: RING-H2 finger protein ATL74 [Cucumis sativus] >KGN54449.1 hypothetic... [more]
XP_008463261.16.9e-6274.07PREDICTED: RING-H2 finger protein ATL74 [Cucumis melo][more]
XP_022144089.19.6e-4057.74RING-H2 finger protein ATL74-like [Momordica charantia][more]
XP_022157309.18.5e-2850.78RING-H2 finger protein ATL74-like [Momordica charantia][more]
XP_002323073.23.2e-2747.37RING-H2 finger protein ATL74 [Populus trichocarpa] >PNS99442.1 hypothetical prot... [more]
BLAST of CsaV3_4G027170 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G01880.11.6e-2563.64RING/U-box superfamily protein[more]
AT3G10910.13.1e-2459.74RING/U-box superfamily protein[more]
AT5G05280.16.5e-2253.41RING/U-box superfamily protein[more]
AT1G49210.19.3e-2134.69RING/U-box superfamily protein[more]
AT1G49200.12.1e-2033.55RING/U-box superfamily protein[more]
BLAST of CsaV3_4G027170 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9LZV8|ATL74_ARATH3.0e-2463.64RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1[more]
sp|Q9SG96|ATL72_ARATH5.6e-2359.74RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1[more]
sp|Q9FLC6|ATL73_ARATH1.2e-2053.41RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1[more]
sp|Q6NML0|ATL76_ARATH1.7e-1934.69E3 ubiquitin-protein ligase ATL76 OS=Arabidopsis thaliana OX=3702 GN=ATL76 PE=1 ... [more]
sp|Q94BY6|ATL75_ARATH3.8e-1933.55RING-H2 finger protein ATL75 OS=Arabidopsis thaliana OX=3702 GN=ATL75 PE=2 SV=1[more]
BLAST of CsaV3_4G027170 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L057|A0A0A0L057_CUCSA3.8e-93100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G333870 PE=4 SV=1[more]
tr|A0A1S3CKD5|A0A1S3CKD5_CUCME4.5e-6274.07RING-H2 finger protein ATL74 OS=Cucumis melo OX=3656 GN=LOC103501464 PE=4 SV=1[more]
tr|B9IGS7|B9IGS7_POPTR2.1e-2747.37Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_016G136200v3 PE=... [more]
tr|F6GXX0|F6GXX0_VITVI8.1e-2744.59Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_08s0058g01270 PE=4 SV=... [more]
tr|A0A2C9VA04|A0A2C9VA04_MANES3.1e-2647.89Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_09G117400 PE=4 SV=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0044267 cellular protein metabolic process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G027170.1CsaV3_4G027170.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 100..141
e-value: 1.9E-6
score: 37.4
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 99..142
e-value: 1.5E-14
score: 53.9
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 100..142
score: 11.958
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 64..148
e-value: 3.3E-21
score: 76.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..18
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 28..148
NoneNo IPR availablePANTHERPTHR14155:SF209RING-H2 FINGER PROTEIN ATL72-RELATEDcoord: 28..148
NoneNo IPR availableCDDcd16461RING-H2_EL5_likecoord: 99..142
e-value: 2.95584E-17
score: 71.1871
NoneNo IPR availableSUPERFAMILYSSF57850RING/U-boxcoord: 99..148

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_4G027170CSPI04G16550Wild cucumber (PI 183967)cpicucB212
CsaV3_4G027170Cucsa.130520Cucumber (Gy14) v1cgycucB185
CsaV3_4G027170Cp4.1LG08g12450Cucurbita pepo (Zucchini)cpecucB1066
CsaV3_4G027170CsGy4G015870Cucumber (Gy14) v2cgybcucB171
CsaV3_4G027170Carg05940Silver-seed gourdcarcucB0020
CsaV3_4G027170Carg01139Silver-seed gourdcarcucB0183
CsaV3_4G027170Carg02157Silver-seed gourdcarcucB0293
CsaV3_4G027170Cla018046Watermelon (97103) v1cucwmB301
CsaV3_4G027170MELO3C009107Melon (DHL92) v3.5.1cucmeB292
CsaV3_4G027170MELO3C025221Melon (DHL92) v3.5.1cucmeB335
CsaV3_4G027170ClCG10G022690Watermelon (Charleston Gray)cucwcgB281
CsaV3_4G027170ClCG11G005680Watermelon (Charleston Gray)cucwcgB293
CsaV3_4G027170Lsi03G002640Bottle gourd (USVL1VR-Ls)cuclsiB303
CsaV3_4G027170Lsi03G022760Bottle gourd (USVL1VR-Ls)cuclsiB298
CsaV3_4G027170MELO3C009107.2Melon (DHL92) v3.6.1cucmedB284
CsaV3_4G027170MELO3C025221.2Melon (DHL92) v3.6.1cucmedB331
CsaV3_4G027170Cla97C10G206100Watermelon (97103) v2cucwmbB275
CsaV3_4G027170Cla97C11G212610Watermelon (97103) v2cucwmbB287
CsaV3_4G027170Bhi11G001453Wax gourdcucwgoB366
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CsaV3_4G027170CsaV3_6G002290Cucumber (Chinese Long) v3cuccucB179
The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G027170Cucumber (Chinese Long) v3cuccucB116
CsaV3_4G027170Silver-seed gourdcarcucB0316
CsaV3_4G027170Silver-seed gourdcarcucB0661
CsaV3_4G027170Silver-seed gourdcarcucB1042
CsaV3_4G027170Cucumber (Gy14) v2cgybcucB128
CsaV3_4G027170Cucumber (Gy14) v1cgycucB282
CsaV3_4G027170Cucurbita maxima (Rimu)cmacucB0301
CsaV3_4G027170Cucurbita maxima (Rimu)cmacucB0339
CsaV3_4G027170Cucurbita maxima (Rimu)cmacucB0797
CsaV3_4G027170Cucurbita maxima (Rimu)cmacucB0851
CsaV3_4G027170Cucurbita maxima (Rimu)cmacucB0988
CsaV3_4G027170Cucurbita maxima (Rimu)cmacucB1020
CsaV3_4G027170Cucurbita moschata (Rifu)cmocucB0294
CsaV3_4G027170Cucurbita moschata (Rifu)cmocucB0334
CsaV3_4G027170Cucurbita moschata (Rifu)cmocucB0781
CsaV3_4G027170Cucurbita moschata (Rifu)cmocucB0838
CsaV3_4G027170Cucurbita moschata (Rifu)cmocucB0972
CsaV3_4G027170Cucurbita moschata (Rifu)cmocucB1004
CsaV3_4G027170Cucurbita pepo (Zucchini)cpecucB0075
CsaV3_4G027170Cucurbita pepo (Zucchini)cpecucB0208
CsaV3_4G027170Cucurbita pepo (Zucchini)cpecucB0509
CsaV3_4G027170Cucurbita pepo (Zucchini)cpecucB0598
CsaV3_4G027170Cucurbita pepo (Zucchini)cpecucB0771
CsaV3_4G027170Wild cucumber (PI 183967)cpicucB159
CsaV3_4G027170Bottle gourd (USVL1VR-Ls)cuclsiB272
CsaV3_4G027170Watermelon (Charleston Gray)cucwcgB318
CsaV3_4G027170Watermelon (97103) v1cucwmB355
CsaV3_4G027170Watermelon (97103) v2cucwmbB307
CsaV3_4G027170Wax gourdcucwgoB397