Cp4.1LG08g12450 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG08g12450
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionRING-H2 finger protein ATL5A, putative
LocationCp4.1LG08 : 9093488 .. 9094054 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACCCAAATTTGCCACGCCGGCTTCTGGCCACTGAGCCAGTGCCGGGGAACACCACGGCTAATTCCTCGTATTATGTCGGGGAGATGAACCTCGACGCTCACATGGTGGTGATTCTGGCGGCGCTCTTATTTGCACTAATTGGAGCTCTTGGTGTTAACTCTCTTGTACGCTGCGTTTTGAGCCTCGGCTTCCGGTTTCGTACGGAGAGGCCGGAGGAGACGGCGGCGCGTTTGGCGGCGATTGGGCTTAAGAAGCGAGAACTTAGTCAGATTCCGGTTGGGGTTTATGGAAGTGATTGTGCGAAAATTAAGGGTACGGATTGCGCGATTTGCCTTGGGGAGTTTGAAGTGGGCGACAAGGTTAGAATGTTGCCTATTTGTAACCATGGATTCCACGTCAGATGTATTGACACGTGGCTGTTATCTCACTCCTCTTGCCCCAACTGTCGCCATTCGTTGCTGCTGCCACCGGTTAAAGGGAAACGAGACGGCGCTACTGTTTCGCCGCCGCAGGGCTCTGCTTCAAGCCACGTCGTTGTGGTCGTAGAGGGTGGTGGCAATTAG

mRNA sequence

ATGGACCCAAATTTGCCACGCCGGCTTCTGGCCACTGAGCCAGTGCCGGGGAACACCACGGCTAATTCCTCGTATTATGTCGGGGAGATGAACCTCGACGCTCACATGGTGGTGATTCTGGCGGCGCTCTTATTTGCACTAATTGGAGCTCTTGGTGTTAACTCTCTTGTACGCTGCGTTTTGAGCCTCGGCTTCCGGTTTCGTACGGAGAGGCCGGAGGAGACGGCGGCGCGTTTGGCGGCGATTGGGCTTAAGAAGCGAGAACTTAGTCAGATTCCGGTTGGGGTTTATGGAAGTGATTGTGCGAAAATTAAGGGTACGGATTGCGCGATTTGCCTTGGGGAGTTTGAAGTGGGCGACAAGGTTAGAATGTTGCCTATTTGTAACCATGGATTCCACGTCAGATGTATTGACACGTGGCTGTTATCTCACTCCTCTTGCCCCAACTGTCGCCATTCGTTGCTGCTGCCACCGGTTAAAGGGAAACGAGACGGCGCTACTGTTTCGCCGCCGCAGGGCTCTGCTTCAAGCCACGTCGTTGTGGTCGTAGAGGGTGGTGGCAATTAG

Coding sequence (CDS)

ATGGACCCAAATTTGCCACGCCGGCTTCTGGCCACTGAGCCAGTGCCGGGGAACACCACGGCTAATTCCTCGTATTATGTCGGGGAGATGAACCTCGACGCTCACATGGTGGTGATTCTGGCGGCGCTCTTATTTGCACTAATTGGAGCTCTTGGTGTTAACTCTCTTGTACGCTGCGTTTTGAGCCTCGGCTTCCGGTTTCGTACGGAGAGGCCGGAGGAGACGGCGGCGCGTTTGGCGGCGATTGGGCTTAAGAAGCGAGAACTTAGTCAGATTCCGGTTGGGGTTTATGGAAGTGATTGTGCGAAAATTAAGGGTACGGATTGCGCGATTTGCCTTGGGGAGTTTGAAGTGGGCGACAAGGTTAGAATGTTGCCTATTTGTAACCATGGATTCCACGTCAGATGTATTGACACGTGGCTGTTATCTCACTCCTCTTGCCCCAACTGTCGCCATTCGTTGCTGCTGCCACCGGTTAAAGGGAAACGAGACGGCGCTACTGTTTCGCCGCCGCAGGGCTCTGCTTCAAGCCACGTCGTTGTGGTCGTAGAGGGTGGTGGCAATTAG

Protein sequence

MDPNLPRRLLATEPVPGNTTANSSYYVGEMNLDAHMVVILAALLFALIGALGVNSLVRCVLSLGFRFRTERPEETAARLAAIGLKKRELSQIPVGVYGSDCAKIKGTDCAICLGEFEVGDKVRMLPICNHGFHVRCIDTWLLSHSSCPNCRHSLLLPPVKGKRDGATVSPPQGSASSHVVVVVEGGGN
Homology
[Close]
BLAST of Cp4.1LG08g12450 vs. Swiss-Prot
Match: ATL74_ARATH (RING-H2 finger protein ATL74 OS=Arabidopsis thaliana GN=ATL74 PE=2 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 6.7e-40
Identity = 88/157 (56.05%), Postives = 105/157 (66.88%), Query Frame = 1 

Query: 8   RLLATEPVPGNTTANSSY---YVGEMNLDAHMVVILAALLFALIGALGVNSLVRCVLSLG 67
           RLL      GN T+ S     Y  +MN DA+MV+ILAALL ALI ALG+NS++RC +  G
Sbjct: 3   RLLLESHGGGNETSGSGGGDGYTRDMNFDANMVIILAALLCALILALGLNSILRCAMRCG 62

Query: 68  FRFRTERPEETAARLAAIGLKKRELSQIPVGVYGSDCAKIKGTDCAICLGEFEVGDKVRM 127
           F   +     T A  A  GLKKREL + PV  YGS   KI  T+CAICLGEF  G++VR+
Sbjct: 63  FGLSSSAAAGTVADRA--GLKKRELKKFPVAEYGSGEVKIAATECAICLGEFADGERVRV 122

Query: 128 LPICNHGFHVRCIDTWLLSHSSCPNCRHSLLLPPVKG 162
           LP CNH FH+ CIDTWL+SHSSCPNCRHSL+   V G
Sbjct: 123 LPPCNHSFHMSCIDTWLVSHSSCPNCRHSLIEVHVAG 157

[Close]
BLAST of Cp4.1LG08g12450 vs. Swiss-Prot
Match: ATL72_ARATH (RING-H2 finger protein ATL72 OS=Arabidopsis thaliana GN=ATL72 PE=2 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.4e-37
Identity = 84/161 (52.17%), Postives = 102/161 (63.35%), Query Frame = 1 

Query: 16  PGNTTANSSYYVGEMNLDAHMVVILAALLFALIGALGVNSLVRCVLSLGFRFRTERPEET 75
           P N        + +   D +MV+ILAALL ALI AL +NS +RCVL +  RF ++     
Sbjct: 13  PANANPKPKGGINDTYFDTNMVIILAALLCALICALSLNSALRCVLRITRRFTSDDQVSN 72

Query: 76  AARL--------AAIGLKKRELSQIPVGVYGSDCAKIKGTDCAICLGEFEVGDKVRMLPI 135
           A+          AA GLKK+ L QIPVG+YGS    +K T+C ICLG+FE G+KVR+LP 
Sbjct: 73  ASNANANLGRLAAATGLKKQALKQIPVGLYGSGIIDMKATECLICLGDFEDGEKVRVLPK 132

Query: 136 CNHGFHVRCIDTWLLSHSSCPNCRHSLLL----PPVKGKRD 165
           CNHGFHVRCIDTWLLS SSCP CR SLLL    P    +RD
Sbjct: 133 CNHGFHVRCIDTWLLSRSSCPTCRQSLLLEQPSPMAVSRRD 173

[Close]
BLAST of Cp4.1LG08g12450 vs. Swiss-Prot
Match: ATL73_ARATH (RING-H2 finger protein ATL73 OS=Arabidopsis thaliana GN=ATL73 PE=2 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 2.6e-36
Identity = 90/180 (50.00%), Postives = 113/180 (62.78%), Query Frame = 1 

Query: 5   LPRRLLATEPVP------------GNTTANSSYYVGEMNLDAHMVVILAALLFALIGALG 64
           + R LLAT+  P            G++ +N+       ++D HMV+ILAALL ALI ALG
Sbjct: 1   MARFLLATQATPTISATDANPRTLGDSVSNNKNIA---SMDTHMVIILAALLCALICALG 60

Query: 65  VNSLVRCVLSLGFRFR-TERPEETAARLAAIGLKKRELSQIPVGVYGSDCAKIKGTDCAI 124
           +NS++RCVL    RF   E P +T A +A  G+KKR L  IPV  Y  +  K+K T+C I
Sbjct: 61  INSVLRCVLRCTRRFTPNEDPVDTNANVAK-GIKKRALKVIPVDSYSPEL-KMKATECLI 120

Query: 125 CLGEFEVGDKVRMLPICNHGFHVRCIDTWLLSHSSCPNCRHSLL--LPPVKGKRDGATVS 170
           CLG+F  G+ VR+LP CNHGFHV+CIDTWLLSHSSCP CR SLL    P  G R G  V+
Sbjct: 121 CLGDFVEGETVRVLPKCNHGFHVKCIDTWLLSHSSCPTCRQSLLEHQTPANGSRRGDDVA 175

[Close]
BLAST of Cp4.1LG08g12450 vs. Swiss-Prot
Match: ATL78_ARATH (RING-H2 finger protein ATL78 OS=Arabidopsis thaliana GN=ATL78 PE=2 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 6.5e-27
Identity = 62/139 (44.60%), Postives = 88/139 (63.31%), Query Frame = 1 

Query: 20  TANSSYYVGEMNLDAHMVVILAALLFALIGALGVNSLVRCVLSLGFRFRTERPEET-AAR 79
           T   S YVG+ N DA++V++L+ LL AL+ +LG+NS++RC L       +E   +    R
Sbjct: 40  TPAPSPYVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALRCSNLVPSEAGGDNYPVR 99

Query: 80  LAAIGLKKRELSQIPVGVYGSDCAKIKG--TDCAICLGEFEVGDKVRMLPICNHGFHVRC 139
           L   G+K++ L       Y ++   + G  T+CAICL EF   ++V++LP C+HGFHVRC
Sbjct: 100 LTNTGVKRKALKSFQTVSYSTEL-NLPGLDTECAICLSEFVAEERVKLLPTCHHGFHVRC 159

Query: 140 IDTWLLSHSSCPNCRHSLL 156
           ID WL SHSSCP CRH L+
Sbjct: 160 IDKWLSSHSSCPTCRHCLI 177

[Close]
BLAST of Cp4.1LG08g12450 vs. Swiss-Prot
Match: ATL80_ARATH (RING-H2 finger protein ATL80 OS=Arabidopsis thaliana GN=ATL80 PE=2 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 6.8e-24
Identity = 70/158 (44.30%), Postives = 93/158 (58.86%), Query Frame = 1 

Query: 8   RLLATEPVPGNTTANSSYYVGEMNLDAHMVVILAALLFALIGALGVNSLVRCV----LSL 67
           RLL     P     NS+       L++ +VVILAALL ALI  LG+ ++ RCV    L+ 
Sbjct: 7   RLLVESNTPSPAIDNST-----AALNSDLVVILAALLCALICVLGLIAVSRCVWLRRLAA 66

Query: 68  GFRF----RTERPEETAARLAAIGLKKRELSQIPVGVYGSDCAKI-KGTDCAICLGEFEV 127
           G R     +T+ P+   A  A  GLKK+ L  +P   +  +  +  K  +CAICL EF  
Sbjct: 67  GNRTVSGSQTQSPQPPVAA-ANKGLKKKVLQSLPKLTFSPESPESEKFAECAICLAEFSA 126

Query: 128 GDKVRMLPICNHGFHVRCIDTWLLSHSSCPNCRHSLLL 157
           GD++R+LP C HGFHV CIDTWL SHSSCP+CR  L++
Sbjct: 127 GDELRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILVV 158

[Close]
BLAST of Cp4.1LG08g12450 vs. TrEMBL
Match: B9SRS1_RICCO (RING-H2 finger protein ATL5A, putative OS=Ricinus communis GN=RCOM_1056880 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 5.5e-49
Identity = 109/184 (59.24%), Postives = 125/184 (67.93%), Query Frame = 1 

Query: 7   RRLLATE-----PVPGNTTANSSYYVGEMNLDAHMVVILAALLFALIGALGVNSLVRCVL 66
           RRLL TE     P P  T    SY +G  N D +MV+ILAALL AL+GALG+NS+VRC L
Sbjct: 3   RRLLETELTVPQPSPDGTRTRDSYIIGA-NFDTNMVIILAALLCALLGALGLNSIVRCAL 62

Query: 67  SLGFRFRTERPEETAARLAAIGLKKRELSQIPVGVYGSDCAKIKGTDCAICLGEFEVGDK 126
               RF  E PE+TAARLAA GLKKREL QIPV VYG++ + I  T+C ICLGEF  G+K
Sbjct: 63  RCSSRFSLETPEQTAARLAAKGLKKRELRQIPVAVYGTEVS-IPATECPICLGEFLDGEK 122

Query: 127 VRMLPICNHGFHVRCIDTWLLSHSSCPNCRHSLLLPPVKGKRDGATVSPPQGSASSHVVV 186
           VR+LP CNHGFHVRCIDTWLLSHSSCPNCR SLL      +  G            +V+V
Sbjct: 123 VRLLPKCNHGFHVRCIDTWLLSHSSCPNCRLSLLXSGAAQEESGRRQGENSPGRQRNVIV 182

[Close]
BLAST of Cp4.1LG08g12450 vs. TrEMBL
Match: B9IGS7_POPTR (Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0016s14320g PE=4 SV=2)

HSP 1 Score: 196.8 bits (499), Expect = 2.3e-47
Identity = 99/155 (63.87%), Postives = 114/155 (73.55%), Query Frame = 1 

Query: 4   NLPRRLLATEPV---PGNTTANSSYYVGEMNLDAHMVVILAALLFALIGALGVNSLVRCV 63
           N+ RR+L T P+   P N       Y+ E N D +MV+ILAALL ALIGALG+NS+VRC+
Sbjct: 3   NMHRRMLDTVPLDVAPANGNRTHDSYINETNFDTNMVIILAALLCALIGALGLNSIVRCL 62

Query: 64  LSLGFRFRTERPEETAARLAAIGLKKRELSQIPVGVYGSDCAKIKGTDCAICLGEFEVGD 123
           L    RF  E  EE AARLAA GLKKR+L QIPV +YG+    I  T+C ICLGEF  G+
Sbjct: 63  LRCSSRFALETTEEAAARLAATGLKKRDLRQIPVAIYGAG-GSISATECPICLGEFVDGE 122

Query: 124 KVRMLPICNHGFHVRCIDTWLLSHSSCPNCRHSLL 156
           KVR+LP CNHGFHVRCIDTWLLSHSSCPNCRHSLL
Sbjct: 123 KVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLL 156

[Close]
BLAST of Cp4.1LG08g12450 vs. TrEMBL
Match: A0A067JGG0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00660 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 4.0e-47
Identity = 108/187 (57.75%), Postives = 125/187 (66.84%), Query Frame = 1 

Query: 4   NLPRRLLATE---PVPGNTTANSSYYVGEMNLDAHMVVILAALLFALIGALGVNSLVRCV 63
           +L RRLL TE   PVP      +     E N DA+MV+ILAALL ALIGALG+NS+VRC 
Sbjct: 3   SLHRRLLETEFSVPVPPPNGNRTREIYNESNFDANMVIILAALLCALIGALGLNSIVRCA 62

Query: 64  LSLGFRFRTERPEETAARLAAIGLKKRELSQIPVGVYGSDCAKIKGTDCAICLGEFEVGD 123
           L    RF TE PE+ AARLAA GLKKR+L QIPV +YG+    I  T+C ICLG+F  G+
Sbjct: 63  LRCTRRFATETPEQAAARLAATGLKKRDLKQIPVAIYGTG-MNIPATECPICLGDFANGE 122

Query: 124 KVRMLPICNHGFHVRCIDTWLLSHSSCPNCRHSLLLPPVKGKRDG-ATVSPPQGSASSHV 183
           KVR+LP CNHGFHVRCIDTWLLSHSSCPNCR SLL     G        +        +V
Sbjct: 123 KVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRLSLLEHTAAGSAAAQEPTAENDDGRRGNV 182

Query: 184 VVVVEGG 187
           VV+VEGG
Sbjct: 183 VVIVEGG 188

[Close]
BLAST of Cp4.1LG08g12450 vs. TrEMBL
Match: I1L711_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_09G275300 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 8.8e-47
Identity = 110/189 (58.20%), Postives = 129/189 (68.25%), Query Frame = 1 

Query: 5   LPRRLLATE----PVPGNTTANSSY--YVGEMNLDAHMVVILAALLFALIGALGVNSLVR 64
           L RRLL TE    P  G +  N++   ++ + N D +MV+ILAALL ALI ALG+NS+ R
Sbjct: 2   LQRRLLETELSMPPSYGGSGGNNTRDTFISDANFDTNMVIILAALLCALICALGLNSIAR 61

Query: 65  CVLSLGFRFRTERPEETAARLAAIGLKKRELSQIPVGVYGSDCAK--IKGTDCAICLGEF 124
           C L  G RF  E  E+ AARLA  GLK+RELS+IPV VYG+   +  I  T+C ICLGEF
Sbjct: 62  CALRCGRRFGDETAEQAAARLAGTGLKRRELSRIPVAVYGAAGGENTIPATECPICLGEF 121

Query: 125 EVGDKVRMLPICNHGFHVRCIDTWLLSHSSCPNCRHSLLLPPVKGKRDGATVSPPQGSA- 184
           E GDKVRMLP CNHGFHVRCIDTWLLSHSSCPNCRHSLL        +  + +P  GS  
Sbjct: 122 EKGDKVRMLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLL--------EKTSAAPESGSGR 181

[Close]
BLAST of Cp4.1LG08g12450 vs. TrEMBL
Match: A0A0S3RTL6_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G115400 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 1.2e-46
Identity = 107/183 (58.47%), Postives = 124/183 (67.76%), Query Frame = 1 

Query: 7   RRLLATE----PVPGNTTANSSYYVGEMNLDAHMVVILAALLFALIGALGVNSLVRCVLS 66
           RR L TE    P  GN T ++  ++ + N D +MV+ILAALL ALI ALG+NS+ RC L 
Sbjct: 4   RRFLDTELSMPPSYGNNTRDT--FISDANFDTNMVIILAALLCALICALGLNSIARCALR 63

Query: 67  LGFRFRTERPEETAARLAAIGLKKRELSQIPVGVYGSDCAKIKGTDCAICLGEFEVGDKV 126
            G RF  E  E+ AARLA  GLK+RELS+IPV VYG+    I  T+C ICLGEFE GD+V
Sbjct: 64  CGRRFGDETEEQAAARLAGTGLKRRELSRIPVAVYGASGETIPATECPICLGEFEKGDRV 123

Query: 127 RMLPICNHGFHVRCIDTWLLSHSSCPNCRHSLLLPPVKGKRDGATVSPPQGS-ASSHVVV 185
           RMLP CNHGFHV CIDTWLLSHSSCPNCRHSLL  P          +P  GS   S VVV
Sbjct: 124 RMLPKCNHGFHVHCIDTWLLSHSSCPNCRHSLLEKP---------AAPESGSRRRSDVVV 175

[Close]
BLAST of Cp4.1LG08g12450 vs. TAIR10
Match: AT5G01880.1 (AT5G01880.1 RING/U-box superfamily protein)

HSP 1 Score: 165.2 bits (417), Expect = 3.8e-41
Identity = 88/157 (56.05%), Postives = 105/157 (66.88%), Query Frame = 1 

Query: 8   RLLATEPVPGNTTANSSY---YVGEMNLDAHMVVILAALLFALIGALGVNSLVRCVLSLG 67
           RLL      GN T+ S     Y  +MN DA+MV+ILAALL ALI ALG+NS++RC +  G
Sbjct: 3   RLLLESHGGGNETSGSGGGDGYTRDMNFDANMVIILAALLCALILALGLNSILRCAMRCG 62

Query: 68  FRFRTERPEETAARLAAIGLKKRELSQIPVGVYGSDCAKIKGTDCAICLGEFEVGDKVRM 127
           F   +     T A  A  GLKKREL + PV  YGS   KI  T+CAICLGEF  G++VR+
Sbjct: 63  FGLSSSAAAGTVADRA--GLKKRELKKFPVAEYGSGEVKIAATECAICLGEFADGERVRV 122

Query: 128 LPICNHGFHVRCIDTWLLSHSSCPNCRHSLLLPPVKG 162
           LP CNH FH+ CIDTWL+SHSSCPNCRHSL+   V G
Sbjct: 123 LPPCNHSFHMSCIDTWLVSHSSCPNCRHSLIEVHVAG 157

[Close]
BLAST of Cp4.1LG08g12450 vs. TAIR10
Match: AT3G10910.1 (AT3G10910.1 RING/U-box superfamily protein)

HSP 1 Score: 157.5 bits (397), Expect = 7.9e-39
Identity = 84/161 (52.17%), Postives = 102/161 (63.35%), Query Frame = 1 

Query: 16  PGNTTANSSYYVGEMNLDAHMVVILAALLFALIGALGVNSLVRCVLSLGFRFRTERPEET 75
           P N        + +   D +MV+ILAALL ALI AL +NS +RCVL +  RF ++     
Sbjct: 13  PANANPKPKGGINDTYFDTNMVIILAALLCALICALSLNSALRCVLRITRRFTSDDQVSN 72

Query: 76  AARL--------AAIGLKKRELSQIPVGVYGSDCAKIKGTDCAICLGEFEVGDKVRMLPI 135
           A+          AA GLKK+ L QIPVG+YGS    +K T+C ICLG+FE G+KVR+LP 
Sbjct: 73  ASNANANLGRLAAATGLKKQALKQIPVGLYGSGIIDMKATECLICLGDFEDGEKVRVLPK 132

Query: 136 CNHGFHVRCIDTWLLSHSSCPNCRHSLLL----PPVKGKRD 165
           CNHGFHVRCIDTWLLS SSCP CR SLLL    P    +RD
Sbjct: 133 CNHGFHVRCIDTWLLSRSSCPTCRQSLLLEQPSPMAVSRRD 173

[Close]
BLAST of Cp4.1LG08g12450 vs. TAIR10
Match: AT5G05280.1 (AT5G05280.1 RING/U-box superfamily protein)

HSP 1 Score: 153.3 bits (386), Expect = 1.5e-37
Identity = 90/180 (50.00%), Postives = 113/180 (62.78%), Query Frame = 1 

Query: 5   LPRRLLATEPVP------------GNTTANSSYYVGEMNLDAHMVVILAALLFALIGALG 64
           + R LLAT+  P            G++ +N+       ++D HMV+ILAALL ALI ALG
Sbjct: 1   MARFLLATQATPTISATDANPRTLGDSVSNNKNIA---SMDTHMVIILAALLCALICALG 60

Query: 65  VNSLVRCVLSLGFRFR-TERPEETAARLAAIGLKKRELSQIPVGVYGSDCAKIKGTDCAI 124
           +NS++RCVL    RF   E P +T A +A  G+KKR L  IPV  Y  +  K+K T+C I
Sbjct: 61  INSVLRCVLRCTRRFTPNEDPVDTNANVAK-GIKKRALKVIPVDSYSPEL-KMKATECLI 120

Query: 125 CLGEFEVGDKVRMLPICNHGFHVRCIDTWLLSHSSCPNCRHSLL--LPPVKGKRDGATVS 170
           CLG+F  G+ VR+LP CNHGFHV+CIDTWLLSHSSCP CR SLL    P  G R G  V+
Sbjct: 121 CLGDFVEGETVRVLPKCNHGFHVKCIDTWLLSHSSCPTCRQSLLEHQTPANGSRRGDDVA 175

[Close]
BLAST of Cp4.1LG08g12450 vs. TAIR10
Match: AT1G49230.1 (AT1G49230.1 RING/U-box superfamily protein)

HSP 1 Score: 122.1 bits (305), Expect = 3.7e-28
Identity = 62/139 (44.60%), Postives = 88/139 (63.31%), Query Frame = 1 

Query: 20  TANSSYYVGEMNLDAHMVVILAALLFALIGALGVNSLVRCVLSLGFRFRTERPEET-AAR 79
           T   S YVG+ N DA++V++L+ LL AL+ +LG+NS++RC L       +E   +    R
Sbjct: 40  TPAPSPYVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALRCSNLVPSEAGGDNYPVR 99

Query: 80  LAAIGLKKRELSQIPVGVYGSDCAKIKG--TDCAICLGEFEVGDKVRMLPICNHGFHVRC 139
           L   G+K++ L       Y ++   + G  T+CAICL EF   ++V++LP C+HGFHVRC
Sbjct: 100 LTNTGVKRKALKSFQTVSYSTEL-NLPGLDTECAICLSEFVAEERVKLLPTCHHGFHVRC 159

Query: 140 IDTWLLSHSSCPNCRHSLL 156
           ID WL SHSSCP CRH L+
Sbjct: 160 IDKWLSSHSSCPTCRHCLI 177

[Close]
BLAST of Cp4.1LG08g12450 vs. TAIR10
Match: AT1G20823.1 (AT1G20823.1 RING/U-box superfamily protein)

HSP 1 Score: 112.1 bits (279), Expect = 3.8e-25
Identity = 70/158 (44.30%), Postives = 93/158 (58.86%), Query Frame = 1 

Query: 8   RLLATEPVPGNTTANSSYYVGEMNLDAHMVVILAALLFALIGALGVNSLVRCV----LSL 67
           RLL     P     NS+       L++ +VVILAALL ALI  LG+ ++ RCV    L+ 
Sbjct: 7   RLLVESNTPSPAIDNST-----AALNSDLVVILAALLCALICVLGLIAVSRCVWLRRLAA 66

Query: 68  GFRF----RTERPEETAARLAAIGLKKRELSQIPVGVYGSDCAKI-KGTDCAICLGEFEV 127
           G R     +T+ P+   A  A  GLKK+ L  +P   +  +  +  K  +CAICL EF  
Sbjct: 67  GNRTVSGSQTQSPQPPVAA-ANKGLKKKVLQSLPKLTFSPESPESEKFAECAICLAEFSA 126

Query: 128 GDKVRMLPICNHGFHVRCIDTWLLSHSSCPNCRHSLLL 157
           GD++R+LP C HGFHV CIDTWL SHSSCP+CR  L++
Sbjct: 127 GDELRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILVV 158

[Close]
BLAST of Cp4.1LG08g12450 vs. NCBI nr
Match: gi|255575568|ref|XP_002528684.1| (PREDICTED: RING-H2 finger protein ATL74 [Ricinus communis])

HSP 1 Score: 202.2 bits (513), Expect = 7.9e-49
Identity = 109/184 (59.24%), Postives = 125/184 (67.93%), Query Frame = 1 

Query: 7   RRLLATE-----PVPGNTTANSSYYVGEMNLDAHMVVILAALLFALIGALGVNSLVRCVL 66
           RRLL TE     P P  T    SY +G  N D +MV+ILAALL AL+GALG+NS+VRC L
Sbjct: 3   RRLLETELTVPQPSPDGTRTRDSYIIGA-NFDTNMVIILAALLCALLGALGLNSIVRCAL 62

Query: 67  SLGFRFRTERPEETAARLAAIGLKKRELSQIPVGVYGSDCAKIKGTDCAICLGEFEVGDK 126
               RF  E PE+TAARLAA GLKKREL QIPV VYG++ + I  T+C ICLGEF  G+K
Sbjct: 63  RCSSRFSLETPEQTAARLAAKGLKKRELRQIPVAVYGTEVS-IPATECPICLGEFLDGEK 122

Query: 127 VRMLPICNHGFHVRCIDTWLLSHSSCPNCRHSLLLPPVKGKRDGATVSPPQGSASSHVVV 186
           VR+LP CNHGFHVRCIDTWLLSHSSCPNCR SLL      +  G            +V+V
Sbjct: 123 VRLLPKCNHGFHVRCIDTWLLSHSSCPNCRLSLLXSGAAQEESGRRQGENSPGRQRNVIV 182

[Close]
BLAST of Cp4.1LG08g12450 vs. NCBI nr
Match: gi|1009158768|ref|XP_015897459.1| (PREDICTED: RING-H2 finger protein ATL74-like [Ziziphus jujuba])

HSP 1 Score: 198.0 bits (502), Expect = 1.5e-47
Identity = 114/192 (59.38%), Postives = 127/192 (66.15%), Query Frame = 1 

Query: 7   RRLLATE---PVP-GNTTANSSYYVGEMNLDAHMVVILAALLFALIGALGVNSLVRCVLS 66
           RRLL  E   P P GN T +S  Y+GE N D +MV+ILAALL ALI ALG+NS+VRC L 
Sbjct: 9   RRLLDKELAVPSPNGNRTRDS--YIGETNFDTNMVIILAALLCALICALGLNSIVRCALR 68

Query: 67  LGFRFRTERPEETAARLAAIGLKKRELSQIPVGVYGSDCAKIKGTDCAICLGEFEVGDKV 126
              RF TE PE+ AARLAA GLKK  L QIPV VYGS    I   +C ICLGEFE GDKV
Sbjct: 69  CSRRFATETPEQAAARLAATGLKKSHLRQIPVAVYGSSGVNIPAMECPICLGEFEDGDKV 128

Query: 127 RMLPICNHGFHVRCIDTWLLSHSSCPNCRHSL-----------LLPPVKGKRDGATVSPP 184
           R+LP CNHGFHV CIDTWLLSHSSCPNCRHSL           L   V G++   T S  
Sbjct: 129 RVLPKCNHGFHVSCIDTWLLSHSSCPNCRHSLLQQHPSVTSSNLRQGVAGEQSSGTGSSR 188

[Close]
BLAST of Cp4.1LG08g12450 vs. NCBI nr
Match: gi|566210246|ref|XP_002323073.2| (zinc finger family protein [Populus trichocarpa])

HSP 1 Score: 196.8 bits (499), Expect = 3.3e-47
Identity = 99/155 (63.87%), Postives = 114/155 (73.55%), Query Frame = 1 

Query: 4   NLPRRLLATEPV---PGNTTANSSYYVGEMNLDAHMVVILAALLFALIGALGVNSLVRCV 63
           N+ RR+L T P+   P N       Y+ E N D +MV+ILAALL ALIGALG+NS+VRC+
Sbjct: 3   NMHRRMLDTVPLDVAPANGNRTHDSYINETNFDTNMVIILAALLCALIGALGLNSIVRCL 62

Query: 64  LSLGFRFRTERPEETAARLAAIGLKKRELSQIPVGVYGSDCAKIKGTDCAICLGEFEVGD 123
           L    RF  E  EE AARLAA GLKKR+L QIPV +YG+    I  T+C ICLGEF  G+
Sbjct: 63  LRCSSRFALETTEEAAARLAATGLKKRDLRQIPVAIYGAG-GSISATECPICLGEFVDGE 122

Query: 124 KVRMLPICNHGFHVRCIDTWLLSHSSCPNCRHSLL 156
           KVR+LP CNHGFHVRCIDTWLLSHSSCPNCRHSLL
Sbjct: 123 KVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLL 156

[Close]
BLAST of Cp4.1LG08g12450 vs. NCBI nr
Match: gi|802778103|ref|XP_012091056.1| (PREDICTED: RING-H2 finger protein ATL74 [Jatropha curcas])

HSP 1 Score: 196.1 bits (497), Expect = 5.7e-47
Identity = 108/187 (57.75%), Postives = 125/187 (66.84%), Query Frame = 1 

Query: 4   NLPRRLLATE---PVPGNTTANSSYYVGEMNLDAHMVVILAALLFALIGALGVNSLVRCV 63
           +L RRLL TE   PVP      +     E N DA+MV+ILAALL ALIGALG+NS+VRC 
Sbjct: 3   SLHRRLLETEFSVPVPPPNGNRTREIYNESNFDANMVIILAALLCALIGALGLNSIVRCA 62

Query: 64  LSLGFRFRTERPEETAARLAAIGLKKRELSQIPVGVYGSDCAKIKGTDCAICLGEFEVGD 123
           L    RF TE PE+ AARLAA GLKKR+L QIPV +YG+    I  T+C ICLG+F  G+
Sbjct: 63  LRCTRRFATETPEQAAARLAATGLKKRDLKQIPVAIYGTG-MNIPATECPICLGDFANGE 122

Query: 124 KVRMLPICNHGFHVRCIDTWLLSHSSCPNCRHSLLLPPVKGKRDG-ATVSPPQGSASSHV 183
           KVR+LP CNHGFHVRCIDTWLLSHSSCPNCR SLL     G        +        +V
Sbjct: 123 KVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRLSLLEHTAAGSAAAQEPTAENDDGRRGNV 182

Query: 184 VVVVEGG 187
           VV+VEGG
Sbjct: 183 VVIVEGG 188

[Close]
BLAST of Cp4.1LG08g12450 vs. NCBI nr
Match: gi|659085724|ref|XP_008443568.1| (PREDICTED: RING-H2 finger protein ATL74-like [Cucumis melo])

HSP 1 Score: 194.9 bits (494), Expect = 1.3e-46
Identity = 106/184 (57.61%), Postives = 125/184 (67.93%), Query Frame = 1 

Query: 1   MDPNLPRRLLATEPVPGNTTANSSYYVGEMNLDAHMVVILAALLFALIGALGVNSLVRCV 60
           MD  L R L   +   GN T+N S YVGE+N D HM + LAALL  LIGA+GVNS+VRC 
Sbjct: 1   MDQKLRRGLTEAQ---GNRTSNWSNYVGEINFDVHMTLTLAALLCLLIGAVGVNSIVRCF 60

Query: 61  LSLGFRFRTERPEETAARLAAIGLKKRELSQIPVGVYGSDCAKIKGTDCAICLGEFEVGD 120
           L   + F TER EE A+   A GLKK+EL+ IP+GVYGSD A IK TDCAICL +FEVGD
Sbjct: 61  LRCRYSFETERAEEDAS---AQGLKKQELALIPIGVYGSD-ANIKSTDCAICLAQFEVGD 120

Query: 121 KVRMLPICNHGFHVRCIDTWLLSHSSCPNCRHSLLLPPVKGKRDGATVSPPQGSASSHVV 180
           K+RMLPICNHGFH+ CIDTWLLS+ SCPNCR S              V PP    S H+V
Sbjct: 121 KLRMLPICNHGFHLTCIDTWLLSNFSCPNCRQS--------------VKPPH--TSPHIV 161

Query: 181 VVVE 185
           V+++
Sbjct: 181 VIID 161

The following BLAST results are available for this feature:
BLAST of Cp4.1LG08g12450 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ATL74_ARATH6.7e-4056.05RING-H2 finger protein ATL74 OS=Arabidopsis thaliana GN=ATL74 PE=2 SV=1[more]
ATL72_ARATH1.4e-3752.17RING-H2 finger protein ATL72 OS=Arabidopsis thaliana GN=ATL72 PE=2 SV=1[more]
ATL73_ARATH2.6e-3650.00RING-H2 finger protein ATL73 OS=Arabidopsis thaliana GN=ATL73 PE=2 SV=1[more]
ATL78_ARATH6.5e-2744.60RING-H2 finger protein ATL78 OS=Arabidopsis thaliana GN=ATL78 PE=2 SV=1[more]
ATL80_ARATH6.8e-2444.30RING-H2 finger protein ATL80 OS=Arabidopsis thaliana GN=ATL80 PE=2 SV=1[more]
BLAST of Cp4.1LG08g12450 vs. TrEMBL
Match NameE-valueIdentityDescription
B9SRS1_RICCO5.5e-4959.24RING-H2 finger protein ATL5A, putative OS=Ricinus communis GN=RCOM_1056880 PE=4 ... [more]
B9IGS7_POPTR2.3e-4763.87Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0016s14320g PE=4 SV=2[more]
A0A067JGG0_JATCU4.0e-4757.75Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00660 PE=4 SV=1[more]
I1L711_SOYBN8.8e-4758.20Uncharacterized protein OS=Glycine max GN=GLYMA_09G275300 PE=4 SV=1[more]
A0A0S3RTL6_PHAAN1.2e-4658.47Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G115400 PE=... [more]
BLAST of Cp4.1LG08g12450 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G01880.13.8e-4156.05 RING/U-box superfamily protein[more]
AT3G10910.17.9e-3952.17 RING/U-box superfamily protein[more]
AT5G05280.11.5e-3750.00 RING/U-box superfamily protein[more]
AT1G49230.13.7e-2844.60 RING/U-box superfamily protein[more]
AT1G20823.13.8e-2544.30 RING/U-box superfamily protein[more]
BLAST of Cp4.1LG08g12450 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|255575568|ref|XP_002528684.1|7.9e-4959.24PREDICTED: RING-H2 finger protein ATL74 [Ricinus communis][more]
gi|1009158768|ref|XP_015897459.1|1.5e-4759.38PREDICTED: RING-H2 finger protein ATL74-like [Ziziphus jujuba][more]
gi|566210246|ref|XP_002323073.2|3.3e-4763.87zinc finger family protein [Populus trichocarpa][more]
gi|802778103|ref|XP_012091056.1|5.7e-4757.75PREDICTED: RING-H2 finger protein ATL74 [Jatropha curcas][more]
gi|659085724|ref|XP_008443568.1|1.3e-4657.61PREDICTED: RING-H2 finger protein ATL74-like [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006869 lipid transport
biological_process GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process
biological_process GO:0044267 cellular protein metabolic process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003674 molecular_function
molecular_function GO:0008289 lipid binding
molecular_function GO:0061630 ubiquitin protein ligase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG08g12450.1Cp4.1LG08g12450.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 108..151
score: 2.4
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 109..150
score: 1.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 109..151
score: 11
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 106..154
score: 1.4
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 36..155
score: 2.1
NoneNo IPR availablePANTHERPTHR14155:SF74RING-H2 FINGER PROTEIN ATL45-RELATEDcoord: 36..155
score: 2.1
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 104..157
score: 3.26

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG08g12450Cucsa.130520Cucumber (Gy14) v1cgycpeB0348
Cp4.1LG08g12450Cucsa.176980Cucumber (Gy14) v1cgycpeB0490
Cp4.1LG08g12450Cla018046Watermelon (97103) v1cpewmB827
Cp4.1LG08g12450Csa3G728120Cucumber (Chinese Long) v2cpecuB860
Cp4.1LG08g12450MELO3C009107Melon (DHL92) v3.5.1cpemeB796
Cp4.1LG08g12450MELO3C025221Melon (DHL92) v3.5.1cpemeB821
Cp4.1LG08g12450ClCG10G022690Watermelon (Charleston Gray)cpewcgB765
Cp4.1LG08g12450CSPI04G16550Wild cucumber (PI 183967)cpecpiB872
Cp4.1LG08g12450CSPI03G30670Wild cucumber (PI 183967)cpecpiB862
Cp4.1LG08g12450Lsi03G022760Bottle gourd (USVL1VR-Ls)cpelsiB707
Cp4.1LG08g12450MELO3C025221.2Melon (DHL92) v3.6.1cpemedB959
Cp4.1LG08g12450MELO3C009107.2Melon (DHL92) v3.6.1cpemedB937
Cp4.1LG08g12450CsaV3_3G033140Cucumber (Chinese Long) v3cpecucB1057
Cp4.1LG08g12450CsaV3_4G027170Cucumber (Chinese Long) v3cpecucB1066
Cp4.1LG08g12450Bhi11G001453Wax gourdcpewgoB1086
Cp4.1LG08g12450CsGy4G015870Cucumber (Gy14) v2cgybcpeB576
Cp4.1LG08g12450CsGy3G028500Cucumber (Gy14) v2cgybcpeB455
Cp4.1LG08g12450Carg01139Silver-seed gourdcarcpeB0233
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG08g12450Cucurbita pepo (Zucchini)cpecpeB105
Cp4.1LG08g12450Cucurbita pepo (Zucchini)cpecpeB487
Cp4.1LG08g12450Cucurbita maxima (Rimu)cmacpeB296
Cp4.1LG08g12450Cucurbita maxima (Rimu)cmacpeB691
Cp4.1LG08g12450Cucurbita maxima (Rimu)cmacpeB758
Cp4.1LG08g12450Cucurbita maxima (Rimu)cmacpeB757
Cp4.1LG08g12450Cucurbita maxima (Rimu)cmacpeB852
Cp4.1LG08g12450Cucurbita moschata (Rifu)cmocpeB259
Cp4.1LG08g12450Cucurbita moschata (Rifu)cmocpeB643
Cp4.1LG08g12450Cucurbita moschata (Rifu)cmocpeB711
Cp4.1LG08g12450Cucurbita moschata (Rifu)cmocpeB797
Cp4.1LG08g12450Cucumber (Chinese Long) v2cpecuB870
Cp4.1LG08g12450Bottle gourd (USVL1VR-Ls)cpelsiB703
Cp4.1LG08g12450Watermelon (Charleston Gray)cpewcgB785
Cp4.1LG08g12450Watermelon (97103) v1cpewmB849
Cp4.1LG08g12450Silver-seed gourdcarcpeB0952
Cp4.1LG08g12450Silver-seed gourdcarcpeB1393
Cp4.1LG08g12450Wax gourdcpewgoB1130