CsGy1G010390 (gene) Cucumber (Gy14) v2

Overview
NameCsGy1G010390
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUncharacterized protein
LocationChr1 : 6536380 .. 6537125 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCATTGACTCACAAGCCACCTTCGTCTTCTTCTTCACCCAATAAGCCAACCCTTGACCCTCACGACCCCAAGGCTGTTCGATGGTCAGAGTCGGTTACCGGCGGTGATTCTGATAGCAGAAAGAAGCAGCATGGGATCCACGATGACGATGAGTTTGAAGAAGGTGAGACACCCGAGCAAGGGGATGAGGAAAATCAGCACCAACTTGTTATTGGAAGTAGAACGCCAGAACCACCCAAGAATGATATGAGTTGGGCTAGGTTCCAAACTTCGCAGTTTTAACTTTTCTTGTAAGTTTTTCTTTTCATATTTAGTTCTTCTTTTTTTCTTTTTTCTTTTTTTTTGTGGAGTACTCTACATGCTTTTGCAAATTGGTTTCTATAATTCAGGTAGATTTAGAAAACTATTTTATTTTGCCTAACCAACATATTGTGTCACAAAAACATAGTAGCTCTTCTGATCTATTATTTTTCCAAAAAAAGAAATAAAATCTACATGTTCTACCATCGGAAAGATATTTGAAGAATCTACATAAGTCTTTAGATCTACAAATTTTACATTGTTAAAATATTTTCAGATATTGTTTTTATGATAGTTACAAACCATAGAAACTATAACCTTACCCAACCATAAAAGTAGACCACTTCACGTTACAACTTCGGCTTTAAATGTCTGTTTTCGAATTGACATCAGATACTTATAATGAGGAATTACACACTGCATGGTATGATGTGTCATCGTAG

mRNA sequence

ATGCCATTGACTCACAAGCCACCTTCGTCTTCTTCTTCACCCAATAAGCCAACCCTTGACCCTCACGACCCCAAGGCTGTTCGATGGTCAGAGTCGGTTACCGGCGGTGATTCTGATAGCAGAAAGAAGCAGCATGGGATCCACGATGACGATGAGTTTGAAGAAGATACTTATAATGAGGAATTACACACTGCATGGTATGATGTGTCATCGTAG

Coding sequence (CDS)

ATGCCATTGACTCACAAGCCACCTTCGTCTTCTTCTTCACCCAATAAGCCAACCCTTGACCCTCACGACCCCAAGGCTGTTCGATGGTCAGAGTCGGTTACCGGCGGTGATTCTGATAGCAGAAAGAAGCAGCATGGGATCCACGATGACGATGAGTTTGAAGAAGATACTTATAATGAGGAATTACACACTGCATGGTATGATGTGTCATCGTAG

Protein sequence

MPLTHKPPSSSSSPNKPTLDPHDPKAVRWSESVTGGDSDSRKKQHGIHDDDEFEEDTYNEELHTAWYDVSS
Homology
[Close]
BLAST of CsGy1G010390 vs. NCBI nr
Match: KGN64497.1 (hypothetical protein Csa_1G059760 [Cucumis sativus])

HSP 1 Score: 112.1 bits (279), Expect = 7.9e-22
Identity = 56/61 (91.80%), Postives = 57/61 (93.44%), Query Frame = 0 

Query: 1  MPLTHKPPSSSSSPNKPTLDPHDPKAVRWSESVTGGDSDSRKKQHGIHDDDEFEEDTYNE 60
          MPLTHKPPSSSSSPNKPTLDPHDPKAVRWSESVTGGDSDSRKKQHGIHDDDEFEE    E
Sbjct: 1  MPLTHKPPSSSSSPNKPTLDPHDPKAVRWSESVTGGDSDSRKKQHGIHDDDEFEEGETPE 60

Query: 61 E 62
          +
Sbjct: 61 Q 61

[Close]
BLAST of CsGy1G010390 vs. TrEMBL
Match: tr|A0A0A0LUR7|A0A0A0LUR7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G059760 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 5.2e-22
Identity = 56/61 (91.80%), Postives = 57/61 (93.44%), Query Frame = 0 

Query: 1  MPLTHKPPSSSSSPNKPTLDPHDPKAVRWSESVTGGDSDSRKKQHGIHDDDEFEEDTYNE 60
          MPLTHKPPSSSSSPNKPTLDPHDPKAVRWSESVTGGDSDSRKKQHGIHDDDEFEE    E
Sbjct: 1  MPLTHKPPSSSSSPNKPTLDPHDPKAVRWSESVTGGDSDSRKKQHGIHDDDEFEEGETPE 60

Query: 61 E 62
          +
Sbjct: 61 Q 61

The following BLAST results are available for this feature:
BLAST of CsGy1G010390 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64497.17.9e-2291.80hypothetical protein Csa_1G059760 [Cucumis sativus][more]
BLAST of CsGy1G010390 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy1G010390 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy1G010390 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LUR7|A0A0A0LUR7_CUCSA5.2e-2291.80Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G059760 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy1G010390.1CsGy1G010390.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..56
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 35..52
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..18

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy1G010390Cla019363Watermelon (97103) v1cgybwmB010
CsGy1G010390Csa1G059760Cucumber (Chinese Long) v2cgybcuB001
CsGy1G010390ClCG03G004550Watermelon (Charleston Gray)cgybwcgB033
CsGy1G010390CSPI01G10400Wild cucumber (PI 183967)cgybcpiB001
CsGy1G010390Cla97C03G055700Watermelon (97103) v2cgybwmbB032
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy1G010390Cucumber (Chinese Long) v3cgybcucB002
CsGy1G010390Cucumber (Chinese Long) v3cgybcucB045
CsGy1G010390Watermelon (97103) v2cgybwmbB002
CsGy1G010390Wax gourdcgybwgoB030
CsGy1G010390Cucumber (Gy14) v2cgybcgybB035
CsGy1G010390Cucurbita maxima (Rimu)cgybcmaB074
CsGy1G010390Cucurbita maxima (Rimu)cgybcmaB093
CsGy1G010390Cucurbita maxima (Rimu)cgybcmaB126
CsGy1G010390Cucurbita maxima (Rimu)cgybcmaB142
CsGy1G010390Cucurbita moschata (Rifu)cgybcmoB068
CsGy1G010390Cucurbita moschata (Rifu)cgybcmoB082
CsGy1G010390Cucurbita moschata (Rifu)cgybcmoB116
CsGy1G010390Cucurbita moschata (Rifu)cgybcmoB133
CsGy1G010390Cucurbita pepo (Zucchini)cgybcpeB018
CsGy1G010390Cucurbita pepo (Zucchini)cgybcpeB023
CsGy1G010390Cucurbita pepo (Zucchini)cgybcpeB067
CsGy1G010390Cucurbita pepo (Zucchini)cgybcpeB070
CsGy1G010390Cucumber (Chinese Long) v2cgybcuB039
CsGy1G010390Bottle gourd (USVL1VR-Ls)cgyblsiB015
CsGy1G010390Bottle gourd (USVL1VR-Ls)cgyblsiB018
CsGy1G010390Melon (DHL92) v3.5.1cgybmeB022
CsGy1G010390Melon (DHL92) v3.5.1cgybmeB034
CsGy1G010390Melon (DHL92) v3.5.1cgybmeB076
CsGy1G010390Melon (DHL92) v3.6.1cgybmedB020
CsGy1G010390Melon (DHL92) v3.6.1cgybmedB072
CsGy1G010390Watermelon (Charleston Gray)cgybwcgB013
CsGy1G010390Watermelon (97103) v1cgybwmB044
CsGy1G010390Wild cucumber (PI 183967)cgybcpiB037
CsGy1G010390Silver-seed gourdcarcgybB0500
CsGy1G010390Silver-seed gourdcarcgybB0637
CsGy1G010390Silver-seed gourdcarcgybB0919
CsGy1G010390Silver-seed gourdcarcgybB0992