ClCG03G004550 (gene) Watermelon (Charleston Gray)

Overview
NameClCG03G004550
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr03 : 4892569 .. 4894053 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGCCATTGACTCGAAAGCCTTCTTCTTCTCCTCCTTCTTCTTCACCCAATAAGCCCACCCTTCACCCTCTTGACCCCAAGGTTGTTAGGTGGTCGGCGTCGGTTACCGGTGGTGATTCCGATGGCAGAGAGAACCAGAATGGGATCAACAATGACAATGAGTTTGAGGCGGGTGAGTCGCCGGCGCAAGGAGATGAGGAAAATCAGCAGCAGCTTGTAATTAGTACTAAAACGCCAGAACACAAGACTGATAGCTGGGCTAGATCCAAACTCCGCAGCTTCAACTTTTCTTGTAAGTCTTCTGTTTTCTTTTTCTTTTTCTTTTCTTTTCCTATAATTTTTTCTGTTAACATTTTTCTTTTTTCTTTCTTTTTTTTTTCTTTTGGACACACTAAGCATAAATACTTAAATCTATATTGAATATATTAACCTTAGGATCATTCATGTCAAATTATCTAGAATAAATAAGATACCGAATTCCATTGAGAGATTGATGATAGTTACAAAATGACTATTATCTTCTTCAACCAAAATTTTGTATGTCTTTAGTAGGATCTCCGTTTACATGAGATTAGAAAGATTGGGTGTGTATTGTTTTAATATATAAGTGACCATAGACTCTCTTTATATACTAGTTTAATTAGGATTCCATTATACACTAATTAACTATGAATGAGCTTCTATCCATTCAGTTCATACTCAATTGGGAAACTAAGATCTTAATTAAATCACATAATAGAGTTCAATCTAATAAAATAACCAATGTGATAAAATACTAATTCACATACATAGCCCATACTTTAATTATATCTAATTGCTTAGCAAATTTGTTTCAATAATTCAGGTGGATCGAGAAAAATATATTTGACCAAACCAACAAATTGTGTCATGAAAACATATATTTTTGTGTTTTTAAATTGAAGAATCCCTTTAGCTCTTCAAATCTACAAATTTTACATTCTTACGATGAAAGTGAAATGGAGAAGAAAAAAATAAAGAATAAGGAGTAATCGACCCAAAAATTTACGTGGTATACTAATAGTGTGTTAGCTGTGTCTATCAATAGAAGAAGAGAGTAAAAAAAATATATCAAATAGACGTTAACAAGATTGGAGGGTTTTACATATAATACCCCACTAAACTTTGGCCCCAAAATCATATATAACATATTAGGCATATACACAACACACACATTACACACATTGGCAAGATTATTTGCCTATATTATTTTTATTGTCAGCGATAATCCTCAACTCATAGAAACTATAGCTCACTCCATCATAAAAGTAACCCACTTAGGACAACGATGATGCATTCCAAAAATTTACTTCACACGTTAACAAACTCTGTTGAAACTTTTGGTGCAACTCTTAAAAAGGTTAATTAAGAGTAGTTGTTTGCTGATTAGGGAGAAGAAGTAGAATGAACAGTAGTCGTTCACTTCGTGCTAAGATTCATCAAGCTGCATTAAAAGGGGACTAG

mRNA sequence

ATGATGCCATTGACTCGAAAGCCTTCTTCTTCTCCTCCTTCTTCTTCACCCAATAAGCCCACCCTTCACCCTCTTGACCCCAAGGTTGTTAGGTGGTCGGCGTCGGTTACCGGTGGTGATTCCGATGGCAGAGAGAACCAGAATGGGATCAACAATGACAATGAGTTTGAGGCGGGTGAGTCGCCGGCGCAAGGAGATGAGGAAAATCAGCAGCAGCTTGTAATTAGGAGAAGAAGTAGAATGAACAGTAGTCGTTCACTTCGTGCTAAGATTCATCAAGCTGCATTAAAAGGGGACTAG

Coding sequence (CDS)

ATGATGCCATTGACTCGAAAGCCTTCTTCTTCTCCTCCTTCTTCTTCACCCAATAAGCCCACCCTTCACCCTCTTGACCCCAAGGTTGTTAGGTGGTCGGCGTCGGTTACCGGTGGTGATTCCGATGGCAGAGAGAACCAGAATGGGATCAACAATGACAATGAGTTTGAGGCGGGTGAGTCGCCGGCGCAAGGAGATGAGGAAAATCAGCAGCAGCTTGTAATTAGGAGAAGAAGTAGAATGAACAGTAGTCGTTCACTTCGTGCTAAGATTCATCAAGCTGCATTAAAAGGGGACTAG

Protein sequence

MMPLTRKPSSSPPSSSPNKPTLHPLDPKVVRWSASVTGGDSDGRENQNGINNDNEFEAGESPAQGDEENQQQLVIRRRSRMNSSRSLRAKIHQAALKGD
Homology
[Close]
BLAST of ClCG03G004550 vs. TrEMBL
Match: A0A0A0LUR7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G059760 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 2.2e-28
Identity = 71/112 (63.39%), Postives = 82/112 (73.21%), Query Frame = 1 

Query: 2   MPLTRKPSSSPPSSSPNKPTLHPLDPKVVRWSASVTGGDSDGRENQNGINNDNEFEAGES 61
           MPLT KP SS  SSSPNKPTL P DPK VRWS SVTGGDSD R+ Q+GI++D+EFE GE+
Sbjct: 1   MPLTHKPPSS--SSSPNKPTLDPHDPKAVRWSESVTGGDSDSRKKQHGIHDDDEFEEGET 60

Query: 62  PAQGDEENQQQLVIRRRS--------------RMNSSRSLRAKIHQAALKGD 100
           P QGDEENQ QLVI  R+              R++ +RSLRAK+HQAALKGD
Sbjct: 61  PEQGDEENQHQLVIGSRTPEPPKNDMSWARSIRVDDNRSLRAKMHQAALKGD 110

[Close]
BLAST of ClCG03G004550 vs. NCBI nr
Match: gi|700209401|gb|KGN64497.1| (hypothetical protein Csa_1G059760 [Cucumis sativus])

HSP 1 Score: 132.9 bits (333), Expect = 3.1e-28
Identity = 71/112 (63.39%), Postives = 82/112 (73.21%), Query Frame = 1 

Query: 2   MPLTRKPSSSPPSSSPNKPTLHPLDPKVVRWSASVTGGDSDGRENQNGINNDNEFEAGES 61
           MPLT KP SS  SSSPNKPTL P DPK VRWS SVTGGDSD R+ Q+GI++D+EFE GE+
Sbjct: 1   MPLTHKPPSS--SSSPNKPTLDPHDPKAVRWSESVTGGDSDSRKKQHGIHDDDEFEEGET 60

Query: 62  PAQGDEENQQQLVIRRRS--------------RMNSSRSLRAKIHQAALKGD 100
           P QGDEENQ QLVI  R+              R++ +RSLRAK+HQAALKGD
Sbjct: 61  PEQGDEENQHQLVIGSRTPEPPKNDMSWARSIRVDDNRSLRAKMHQAALKGD 110

The following BLAST results are available for this feature:
BLAST of ClCG03G004550 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LUR7_CUCSA2.2e-2863.39Uncharacterized protein OS=Cucumis sativus GN=Csa_1G059760 PE=4 SV=1[more]
BLAST of ClCG03G004550 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209401|gb|KGN64497.1|3.1e-2863.39hypothetical protein Csa_1G059760 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG03G004550.1ClCG03G004550.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG03G004550Cla019363Watermelon (97103) v1wcgwmB223
ClCG03G004550Cla97C03G055700Watermelon (97103) v2wcgwmbB186
ClCG03G004550CSPI01G10400Wild cucumber (PI 183967)cpiwcgB038
ClCG03G004550Lsi02G005780Bottle gourd (USVL1VR-Ls)lsiwcgB184
ClCG03G004550CsGy1G010390Cucumber (Gy14) v2cgybwcgB033
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG03G004550Silver-seed gourdcarwcgB0480
ClCG03G004550Silver-seed gourdcarwcgB0626
ClCG03G004550Silver-seed gourdcarwcgB0908
ClCG03G004550Silver-seed gourdcarwcgB0981
ClCG03G004550Cucumber (Chinese Long) v3cucwcgB038
ClCG03G004550Cucumber (Chinese Long) v3cucwcgB060
ClCG03G004550Cucumber (Chinese Long) v3cucwcgB480
ClCG03G004550Watermelon (97103) v2wcgwmbB172
ClCG03G004550Wax gourdwcgwgoB343
ClCG03G004550Watermelon (Charleston Gray)wcgwcgB091
ClCG03G004550Cucumber (Gy14) v1cgywcgB025
ClCG03G004550Cucumber (Gy14) v1cgywcgB095
ClCG03G004550Cucurbita maxima (Rimu)cmawcgB197
ClCG03G004550Cucurbita maxima (Rimu)cmawcgB358
ClCG03G004550Cucurbita maxima (Rimu)cmawcgB584
ClCG03G004550Cucurbita maxima (Rimu)cmawcgB760
ClCG03G004550Cucurbita moschata (Rifu)cmowcgB187
ClCG03G004550Cucurbita moschata (Rifu)cmowcgB350
ClCG03G004550Cucurbita moschata (Rifu)cmowcgB583
ClCG03G004550Cucurbita moschata (Rifu)cmowcgB761
ClCG03G004550Wild cucumber (PI 183967)cpiwcgB482
ClCG03G004550Cucumber (Chinese Long) v2cuwcgB035
ClCG03G004550Cucumber (Chinese Long) v2cuwcgB460
ClCG03G004550Melon (DHL92) v3.5.1mewcgB151
ClCG03G004550Melon (DHL92) v3.5.1mewcgB152
ClCG03G004550Melon (DHL92) v3.5.1mewcgB524
ClCG03G004550Watermelon (97103) v1wcgwmB237
ClCG03G004550Cucurbita pepo (Zucchini)cpewcgB036
ClCG03G004550Cucurbita pepo (Zucchini)cpewcgB070
ClCG03G004550Cucurbita pepo (Zucchini)cpewcgB430
ClCG03G004550Cucurbita pepo (Zucchini)cpewcgB463
ClCG03G004550Bottle gourd (USVL1VR-Ls)lsiwcgB134
ClCG03G004550Cucumber (Gy14) v2cgybwcgB421
ClCG03G004550Melon (DHL92) v3.6.1medwcgB143
ClCG03G004550Melon (DHL92) v3.6.1medwcgB144
ClCG03G004550Melon (DHL92) v3.6.1medwcgB519