Cla019363 (gene) Watermelon (97103) v1

Overview
NameCla019363
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr3 : 4608087 .. 4609571 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGCCATTGACTCGAAAGCCTTCTTCTTCTCCTCCTTCTTCTTCACCCAATAAGCCCACCCTTCACCCTCTTGACCCCAAGGTTGTTAGGTGGTCGGCGTCGGTTACCGGTGGTGATTCCGATGGCAGAGAGAACCAGAATGGGATCAACAATGACAATGAGTTTGAGGCGGGTGAGTCGCCGGCGCAAGGAGATGAGGAAAATCAGCAGCAGCTTGTAATTAGTACTAAAACGCCAGAACACAAGACTGATAGCTGGGCTAGATCCAAACTCCGCAGCTTCAACTTTTCTTGTAAGTCTTCTGTTTTCTTTTTCTTTTTCTTTTCTTTTCCTATAATTTTTTCTGTTAACATTTTTCTTTTTTCTTTCTTTTTTTTTTCTTTTGGACACACTAAGCATAAATACTTAAATCTATATTGAATATATTAACCTTAGGATCATTCATGTCAAATTATCTAGAATAAATAAGATACCGAATTCCATTGAGAGATTGATGATAGTTACAAAATGACTATTATCTTCTTCAACCAAAATTTTGTATGTCTTTAGTAGGATCTCCGTTTACATGAGATTAGAAAGATTGGGTGTGTATTGTTTTAATATATAAGTGACCATAGACTCTCTTTATATACTAGTTTAATTAGGATTCCATTATACACTAATTAACTATGAATGAGCTTCTATCCATTCAGTTCATACTCAATTGGGAAACTAAGATCTTAATTAAATCACATAATAGAGTTCAATCTAATAAAATAACCAATGTGATAAAATACTAATTCACATACATAGCCCATACTTTAATTATATCTAATTGCTTAGCAAATTTGTTTCAATAATTCAGGTGGATCGAGAAAAATATATTTGACCAAACCAACAAATTGTGTCATGAAAACATATATTTTTGTGTTTTTAAATTGAAGAATCCCTTTAGCTCTTCAAATCTACAAATTTTACATTCTTACGATGAAAGTGAAATGGAGAAGAAAAAAATAAAGAATAAGGAGTAATCGACCCAAAAATTTACGTGGTATACTAATAGTGTGTTAGCTGTGTCTATCAATAGAAGAAGAGAGTAAAAAAAATATATCAAATAGACGTTAACAAGATTGGAGGGTTTTACATATAATACCCCACTAAACTTTGGCCCCAAAATCATATATAACATATTAGGCATATACACAACACACACATTACACACATTGGCAAGATTATTTGCCTATATTATTTTTATTGTCAGCGATAATCCTCAACTCATAGAAACTATAGCTCACTCCATCATAAAAGTAACCCACTTAGGACAACGATGATGCATTCCAAAAATTTACTTCACACGTTAACAAACTCTGTTGAAACTTTTGGTGCAACTCTTAAAAAGGTTAATTAAGAGTAGTTGTTTGCTGATTAGGGAGAAGAAGTAGAATGAACAGTAGTCGTTCACTTCGTGCTAAGATTCATCAAGCTGCATTAAAAGGGGACTAG

mRNA sequence

ATGATGCCATTGACTCGAAAGCCTTCTTCTTCTCCTCCTTCTTCTTCACCCAATAAGCCCACCCTTCACCCTCTTGACCCCAAGGTTGTTAGGTGGTCGGCGTCGGTTACCGGTGGTGATTCCGATGGCAGAGAGAACCAGAATGGGATCAACAATGACAATGAGTTTGAGGCGGGTGAGTCGCCGGCGCAAGGAGATGAGGAAAATCAGCAGCAGCTTGTAATTAGTACTAAAACGCCAGAACACAAGACTGATAGCTGGGCTAGATCCAAACTCCGCAGCTTCAACTTTTCTTGGAGAAGAAGTAGAATGAACAGTAGTCGTTCACTTCGTGCTAAGATTCATCAAGCTGCATTAAAAGGGGACTAG

Coding sequence (CDS)

ATGATGCCATTGACTCGAAAGCCTTCTTCTTCTCCTCCTTCTTCTTCACCCAATAAGCCCACCCTTCACCCTCTTGACCCCAAGGTTGTTAGGTGGTCGGCGTCGGTTACCGGTGGTGATTCCGATGGCAGAGAGAACCAGAATGGGATCAACAATGACAATGAGTTTGAGGCGGGTGAGTCGCCGGCGCAAGGAGATGAGGAAAATCAGCAGCAGCTTGTAATTAGTACTAAAACGCCAGAACACAAGACTGATAGCTGGGCTAGATCCAAACTCCGCAGCTTCAACTTTTCTTGGAGAAGAAGTAGAATGAACAGTAGTCGTTCACTTCGTGCTAAGATTCATCAAGCTGCATTAAAAGGGGACTAG

Protein sequence

MMPLTRKPSSSPPSSSPNKPTLHPLDPKVVRWSASVTGGDSDGRENQNGINNDNEFEAGESPAQGDEENQQQLVISTKTPEHKTDSWARSKLRSFNFSWRRSRMNSSRSLRAKIHQAALKGD
Homology
[Close]
BLAST of Cla019363 vs. TrEMBL
Match: A0A0A0LUR7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G059760 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 6.8e-32
Identity = 80/123 (65.04%), Postives = 92/123 (74.80%), Query Frame = 1 

Query: 2   MPLTRKPSSSPPSSSPNKPTLHPLDPKVVRWSASVTGGDSDGRENQNGINNDNEFEAGES 61
           MPLT KP SS  SSSPNKPTL P DPK VRWS SVTGGDSD R+ Q+GI++D+EFE GE+
Sbjct: 1   MPLTHKPPSS--SSSPNKPTLDPHDPKAVRWSESVTGGDSDSRKKQHGIHDDDEFEEGET 60

Query: 62  PAQGDEENQQQLVISTKTPE-HKTD-SWARSKLRSFNFSWRRSRMNSSRSLRAKIHQAAL 121
           P QGDEENQ QLVI ++TPE  K D SWARS            R++ +RSLRAK+HQAAL
Sbjct: 61  PEQGDEENQHQLVIGSRTPEPPKNDMSWARS-----------IRVDDNRSLRAKMHQAAL 110

Query: 122 KGD 123
           KGD
Sbjct: 121 KGD 110

[Close]
BLAST of Cla019363 vs. NCBI nr
Match: gi|700209401|gb|KGN64497.1| (hypothetical protein Csa_1G059760 [Cucumis sativus])

HSP 1 Score: 144.8 bits (364), Expect = 9.8e-32
Identity = 80/123 (65.04%), Postives = 92/123 (74.80%), Query Frame = 1 

Query: 2   MPLTRKPSSSPPSSSPNKPTLHPLDPKVVRWSASVTGGDSDGRENQNGINNDNEFEAGES 61
           MPLT KP SS  SSSPNKPTL P DPK VRWS SVTGGDSD R+ Q+GI++D+EFE GE+
Sbjct: 1   MPLTHKPPSS--SSSPNKPTLDPHDPKAVRWSESVTGGDSDSRKKQHGIHDDDEFEEGET 60

Query: 62  PAQGDEENQQQLVISTKTPE-HKTD-SWARSKLRSFNFSWRRSRMNSSRSLRAKIHQAAL 121
           P QGDEENQ QLVI ++TPE  K D SWARS            R++ +RSLRAK+HQAAL
Sbjct: 61  PEQGDEENQHQLVIGSRTPEPPKNDMSWARS-----------IRVDDNRSLRAKMHQAAL 110

Query: 122 KGD 123
           KGD
Sbjct: 121 KGD 110

The following BLAST results are available for this feature:
BLAST of Cla019363 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LUR7_CUCSA6.8e-3265.04Uncharacterized protein OS=Cucumis sativus GN=Csa_1G059760 PE=4 SV=1[more]
BLAST of Cla019363 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209401|gb|KGN64497.1|9.8e-3265.04hypothetical protein Csa_1G059760 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla019363Cla019363.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla019363Cla97C03G055700Watermelon (97103) v2wmwmbB124
Cla019363ClCG03G004550Watermelon (Charleston Gray)wcgwmB223
Cla019363CSPI01G10400Wild cucumber (PI 183967)cpiwmB010
Cla019363Lsi02G005780Bottle gourd (USVL1VR-Ls)lsiwmB184
Cla019363CsGy1G010390Cucumber (Gy14) v2cgybwmB010
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla019363Silver-seed gourdcarwmB0489
Cla019363Silver-seed gourdcarwmB0641
Cla019363Silver-seed gourdcarwmB0930
Cla019363Silver-seed gourdcarwmB1004
Cla019363Cucumber (Chinese Long) v3cucwmB013
Cla019363Cucumber (Chinese Long) v3cucwmB036
Cla019363Cucumber (Chinese Long) v3cucwmB503
Cla019363Watermelon (97103) v2wmwmbB111
Cla019363Wax gourdwgowmB473
Cla019363Watermelon (97103) v1wmwmB082
Cla019363Cucumber (Gy14) v1cgywmB020
Cla019363Cucumber (Gy14) v1cgywmB097
Cla019363Cucurbita maxima (Rimu)cmawmB188
Cla019363Cucurbita maxima (Rimu)cmawmB371
Cla019363Cucurbita maxima (Rimu)cmawmB623
Cla019363Cucurbita maxima (Rimu)cmawmB820
Cla019363Cucurbita moschata (Rifu)cmowmB176
Cla019363Cucurbita moschata (Rifu)cmowmB360
Cla019363Cucurbita moschata (Rifu)cmowmB614
Cla019363Cucurbita moschata (Rifu)cmowmB810
Cla019363Melon (DHL92) v3.5.1mewmB149
Cla019363Melon (DHL92) v3.5.1mewmB563
Cla019363Watermelon (Charleston Gray)wcgwmB124
Cla019363Cucumber (Chinese Long) v2cuwmB008
Cla019363Cucumber (Chinese Long) v2cuwmB477
Cla019363Cucurbita pepo (Zucchini)cpewmB025
Cla019363Cucurbita pepo (Zucchini)cpewmB070
Cla019363Cucurbita pepo (Zucchini)cpewmB477
Cla019363Cucurbita pepo (Zucchini)cpewmB503
Cla019363Bottle gourd (USVL1VR-Ls)lsiwmB137
Cla019363Cucumber (Gy14) v2cgybwmB448
Cla019363Melon (DHL92) v3.6.1medwmB145
Cla019363Melon (DHL92) v3.6.1medwmB550