CsGy1G010390.1 (mRNA) Cucumber (Gy14) v2

Overview
NameCsGy1G010390.1
TypemRNA
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUncharacterized protein
LocationChr1 : 6536380 .. 6537125 (+)
Sequence length216
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCATTGACTCACAAGCCACCTTCGTCTTCTTCTTCACCCAATAAGCCAACCCTTGACCCTCACGACCCCAAGGCTGTTCGATGGTCAGAGTCGGTTACCGGCGGTGATTCTGATAGCAGAAAGAAGCAGCATGGGATCCACGATGACGATGAGTTTGAAGAAGGTGAGACACCCGAGCAAGGGGATGAGGAAAATCAGCACCAACTTGTTATTGGAAGTAGAACGCCAGAACCACCCAAGAATGATATGAGTTGGGCTAGGTTCCAAACTTCGCAGTTTTAACTTTTCTTGTAAGTTTTTCTTTTCATATTTAGTTCTTCTTTTTTTCTTTTTTCTTTTTTTTTGTGGAGTACTCTACATGCTTTTGCAAATTGGTTTCTATAATTCAGGTAGATTTAGAAAACTATTTTATTTTGCCTAACCAACATATTGTGTCACAAAAACATAGTAGCTCTTCTGATCTATTATTTTTCCAAAAAAAGAAATAAAATCTACATGTTCTACCATCGGAAAGATATTTGAAGAATCTACATAAGTCTTTAGATCTACAAATTTTACATTGTTAAAATATTTTCAGATATTGTTTTTATGATAGTTACAAACCATAGAAACTATAACCTTACCCAACCATAAAAGTAGACCACTTCACGTTACAACTTCGGCTTTAAATGTCTGTTTTCGAATTGACATCAGATACTTATAATGAGGAATTACACACTGCATGGTATGATGTGTCATCGTAG

mRNA sequence

ATGCCATTGACTCACAAGCCACCTTCGTCTTCTTCTTCACCCAATAAGCCAACCCTTGACCCTCACGACCCCAAGGCTGTTCGATGGTCAGAGTCGGTTACCGGCGGTGATTCTGATAGCAGAAAGAAGCAGCATGGGATCCACGATGACGATGAGTTTGAAGAAGATACTTATAATGAGGAATTACACACTGCATGGTATGATGTGTCATCGTAG

Coding sequence (CDS)

ATGCCATTGACTCACAAGCCACCTTCGTCTTCTTCTTCACCCAATAAGCCAACCCTTGACCCTCACGACCCCAAGGCTGTTCGATGGTCAGAGTCGGTTACCGGCGGTGATTCTGATAGCAGAAAGAAGCAGCATGGGATCCACGATGACGATGAGTTTGAAGAAGATACTTATAATGAGGAATTACACACTGCATGGTATGATGTGTCATCGTAG

Protein sequence

MPLTHKPPSSSSSPNKPTLDPHDPKAVRWSESVTGGDSDSRKKQHGIHDDDEFEEDTYNEELHTAWYDVSS
Homology
[Close]
BLAST of CsGy1G010390.1 vs. NCBI nr
Match: KGN64497.1 (hypothetical protein Csa_1G059760 [Cucumis sativus])

HSP 1 Score: 112.1 bits (279), Expect = 7.9e-22
Identity = 56/61 (91.80%), Postives = 57/61 (93.44%), Query Frame = 0 

Query: 1  MPLTHKPPSSSSSPNKPTLDPHDPKAVRWSESVTGGDSDSRKKQHGIHDDDEFEEDTYNE 60
          MPLTHKPPSSSSSPNKPTLDPHDPKAVRWSESVTGGDSDSRKKQHGIHDDDEFEE    E
Sbjct: 1  MPLTHKPPSSSSSPNKPTLDPHDPKAVRWSESVTGGDSDSRKKQHGIHDDDEFEEGETPE 60

Query: 61 E 62
          +
Sbjct: 61 Q 61

[Close]
BLAST of CsGy1G010390.1 vs. TrEMBL
Match: tr|A0A0A0LUR7|A0A0A0LUR7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G059760 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 5.2e-22
Identity = 56/61 (91.80%), Postives = 57/61 (93.44%), Query Frame = 0 

Query: 1  MPLTHKPPSSSSSPNKPTLDPHDPKAVRWSESVTGGDSDSRKKQHGIHDDDEFEEDTYNE 60
          MPLTHKPPSSSSSPNKPTLDPHDPKAVRWSESVTGGDSDSRKKQHGIHDDDEFEE    E
Sbjct: 1  MPLTHKPPSSSSSPNKPTLDPHDPKAVRWSESVTGGDSDSRKKQHGIHDDDEFEEGETPE 60

Query: 61 E 62
          +
Sbjct: 61 Q 61

The following BLAST results are available for this feature:
BLAST of CsGy1G010390.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64497.17.9e-2291.80hypothetical protein Csa_1G059760 [Cucumis sativus][more]
BLAST of CsGy1G010390.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy1G010390.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy1G010390.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LUR7|A0A0A0LUR7_CUCSA5.2e-2291.80Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G059760 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsGy1G010390CsGy1G010390gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy1G010390.1.exon.1CsGy1G010390.1.exon.1exon
CsGy1G010390.1.exon.2CsGy1G010390.1.exon.2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy1G010390.1.CDS.1CsGy1G010390.1.CDS.1CDS
CsGy1G010390.1.CDS.2CsGy1G010390.1.CDS.2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsGy1G010390.1CsGy1G010390.1-proteinpolypeptide


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..56
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 35..52
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..18