Cp4.1LG20g05010 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG20g05010
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionPrefoldin subunit 6
LocationCp4.1LG20 : 2903083 .. 2909191 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTTTTTCCAATTTAAAATTGTTAATAAACTAGTAACTGAGCAGCCTACCGCGCGCAAGTTTCCTAGGCAACGGAGGAAGTCGACGATTCATCGAGAATGGGTTCCACAAGTGCTGTTCGAGAGCTACAGCGCGAGCTGGAGACGAAAGCCAACGATCTCAGCAAGCTACAGAAAGGCAAGTCTCTAATCGATTCTCGTTTCCTCCATGTTCATTCGATTAGCACGATTTATTGAAACATCAATATTTCAATCCATATACTGTGTTGCCTGTTCTATCTGGATTCGATACTGTCAATTTTCTTTCACGAAAAGCCTAACGTGGTAATGGATTTTTCAGATATTGCGAAGAACCACCAAATTAGGAAGAAGTACACTATTCAGCTGGGTGAGAACGAGCTCGTCCTTAAGGTTTTTCCACGCCTCTGACCTGTTTCCCTTGTAGATTAAACTGTATGCTTGTGCATAGTTCTGTAGTAAGGAGGGCAAGCCTTCAGGGCATGTTTTTCACTTTATTTGACATGTGGTTTAGATTATGGAATTTCTTTACATTTATATAATCTGGTATACATTAAGAATTTGAGCCATTCTTATCAGCGGACATTTTTCTCATTCATTGTTACTATGTGTGAACTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTGATTTTCTTCCTTGTATGCAGGAATTGGATCTACTTAAAGATGACGCAAATGTATATAAACTGATTGGTCCAGTGCTCGTTAAGCAAGATTTGGCAGAAGCAAATGCCAATGTTCGCAAGAGAATTGATTACATTTCTGCAGAATTGTATGTTTTTTTCTTTATTTTTCCGTTTACATTATTAGTTCATGGATAGTAGTGATAATAATACTATAGCAACAACCATTTGAGAACCTTCATCAGACTAATTACCTAATAAAATATATATACTTAAGTGTTTTCTTTACCTTTTGGATGGCTCTATCTTAGCCATAGATAGCTGATCATGTTATGGACTTTGTATATGTTGAAACTATGTTGGATTTTTCTGGAAGCAAGATGGAGGAGACAAGAAGGGCGTGGTGTCCTTAGACAGTTTCATCTGATTGATATGGATATTGTCCTTGCCTATAAACAACCCCTTTGAGAGTATCAATTTGCATACCTTGCCGAGCATACTTTCTGAAACATTAGCTTTGAGTTTGACCATGAAAAGAAACGGAGCAAGAGAAACACCTTGTTTACAACCTTTAGAGGCATGGTAAGACCTATGGGATTATTTATTGTTGAGGAAGCTGGAACAAAAATGGGGGAGATGCAGGCATGCCTACAGATCTCCAAATTATTCAGTAGCCAGTGGACACTTCTTTGCATATAGGTTCTTTGCCAAGCTGACCCCATTCACTAGCCAATGATCACTTCTTTTGCCATCCCATGATGGGCAACTGCCAAGGAAATTTGACTCAACTTTAATGACATGTCTGCTATTTGATTCTTCATTTGAAATGTTGATAGCATTTTTCATCACATGTCATTTACTCTGGAGTTCTACTCTATCAACTCCCTTTCTTGAAGATTCATAAGCTTTTAGTTGGATCATATATGGAAAAAAACCCACATTTATTATGAATTTGAATTTCTGTGGCAAGAAGTTCTCTTATCGAATTGTGGTCGGAAAGGAACATAAGATTTTTTTAAGAAAGACATCTTCCTTGGGTTGATCGGTTTGAAACAGCAGGCTGTCATGCTATCTTCATGCTCCTTTTTTAAATCTTATGCTTATTTTTCATCCTATGATATACATATTAACTAGATTGCCTTTCTATTTCCATTGTAATGATATTTATTCACTCTCTTGTGAGTTTTTATCATTTGAGCAGTCATCTCTTTTCATTTGTTCAATGAAAAGTTTTGTTTATTGTTTAAGAAAATATTTTGTTTGGTAATAGCAAAATCTGAGTCTATTTGGTAGGAGCTGGTTCCTTTCATCTTTAATTTATTTATTTTTTAAAAAAGAGAACATATACTTCCAAACAAAAGAAAAGTTACTAACTAGAGGTTCAAGTAGAGGAAACCTCTACCGAAGGACATTATTAAAAGAAAACCTTCCAATCTATATCCTTACATTTTATTCTTTATCAATCGCAACATTCCACTTCCATATACCTTAATAATTGTGTATTAATTCAATGATTTTTTCACAATTCAGGAAACGTCTTGATTCAGCCCTTCAAGATTTGGAAGAGAAGCAAAATAGCAAGAGAGATGCGGTTTGTACCTTTCATACTTCTTTAGATCTTAAAGCTCACCTTCGACTGATATTTGCAGGACCCCAAAAGAAAAGAATAAAACATTTTTTGTGCCTGATTCTTGCTTGTTTCTTGGAGGATCCAGAAGTGATTTCTTGTCTTCAGATATGTTGAATACACAAGGCTGTAAAATGTGTCTGGAGAAAAAAGTTTGAAAACAGAGAAACTGAAATCTGAACTTGATTTAAAACCGTAGGCAAATTGAGAAAATGACTAAATTTAGAGAAGTTTTTTTTTTTTTTAGCATGCTGCCTCATCCTCTTTTCCTTCTTTTCCTCGACATGAAACTAAGTTCAAGATGCATGGCCTTTTCCTGTCTGCTACCTTTCATCTAGGTTTTCATCTAGGTTGAACTCATGAAGAAATAATTGAAGTTGGACCGAATAGTTAGTTTTCGAAGTCCTTTCCGAATTGAAGCATTGAGGACTAGAAGTTAAAAAAATGAGAAAAAGAATGCCTACATCGAGAGAATAGAGTTCATGCTTTTCCTTTTTGTTTCATAAGATCTTTCTATGGTTCCTCCATAAATGATTAAATAGGGTTCTTCCTCTTTATGAGATCATAGGGCCAGTTCTTATTTTATTTTATTTTTTTTTATTTACTTTTTTAAAAAAATCTTACGTGTTTCTTTTCCTCTATAAATGAGTTAAATAATTGATGTATGAAATTAAGAAAAGAGGGTTAGAGATGCCTCGATCTACAGGCGTTACAATAAACTTCTTAAAGCAAATATAAAGCTATAAGCTATAAGAATGAGAACTTAGAGACAATTTACACCTGGAAATTGGTGAAGAAGATAAAGTTGTAAAAAAAGATCTAGCATAAGATTGCTGTTCTCTTTGCAAAGACCCTGTGGTTCCTTTCAGTCCAAGTAGCCCAAAAGAAGGCTTTAACCATATGTATTCAAAGGAGCCTTTTCTTCTTCTTGAAGGGATGGCTCGATAGTGTTAATAATAGGATGCAATTTACCGGTTTGCAAAATTGATTTTGAAAAGGCCTACAATCACGTCGATTGGACTTTCTTGGATAAAGTTTTGGAAAGAAACGGTTTGAAGTGGAGGATGTGGATGTGGAGTTGTACGAGGAATATGAGTTACTCTTTTCTCCTAAAGTGGGGTCCGAGGGGGTAAGATCAAGGCTCCCAGAAGCCTTAGACAGGAAGACCATTTATCCACTTTTCTTATTTTGCTTGTTGTGGATGTTTTGAGCAGGCTTGTTTTCAACAACGTTGAAGGAAAAATTATTGAGCCCTTTGAGGTCTGAAGGAGAATGTGGATTTATCCAACCTTAAATTTTCTGATGACACTTTTTTTCCTTTTTTGTTTTTTTCCATGGTAAGGAGAGCCTATTCTTCATCTTAAACAATATTTTTGTCTTTCTTTGAAGCCATAGGCTTAAGATTAATAGGAGTAAGTATCAGATTAGGAGGCTCAATTGTGATTCATTAGTAGATGGCAGACGTGGTGGGCTGTGATATAGGATCCTTTCCCTCATCTTGCTAAAGTCTCCCTCTTGGAAATAATTTCAAATCTATTTCTTGGAACTCAGTGGTGGACAAAGTTAAAAAAAGATCGGCTTCTTGGAGGAAATGTTTTTTCTCCAAAGCTGGGTGCTGAGTAGTATTCCTATTTATTACTTCATCCTATTTGGGGCCTTGTGCTTGGTTTGTAAGAATATTGAGAAGCTTATGCGAAGTTTCCTTTGGGAATGAGTGGAAGAAGGAAAAGGAGTGCACTTGGTTAGGTGGGGGATCATTGGGAACCATGTGAACCTGGGGGGTTAGAAATTGGTAATTTAACAACTCTAAAAAAGCTTTGTTAGCTAAATGCATAGGATTATCGCTATCAAGTATGACCCTTATCCTTTTGAGAGGTTGTCGAGTGAGGTTAAAGACACTTATTGAAACCTGCGGAAGAATATTTCTAACAAGCTCTCTTCTTTCTCCCACTCAGTTCATTCTGTGATGGGGGAGGGGAAGGAAGCATATTTTTGGGAAGATCAGTGGGTTGGGGATAGACCCATCTGCTTGACATTTTTCCATCTCTATCATTTGTCTTTCTTTAAAAATTGTTTGGTGACTGATATTTTAGTTTGGTCGGGGAGTCTGGTTTCCTTCTCCTTTGGGTTCCATCACTTGTTGTACGATAGGGAAGTAACAAATGTTGTCTCTCTCTTTTGTCTTTGATTGGGGAGATTGATTTTGGGCTCGGGAGAATTGATGCTTGTGTTTGGAGTCTCAACCCTTAGAAAGAATTCCCTTGTAAATCTTTCTTTCGTTGTTTGATGGACCCTTCTCTCGCTAGGAAATATGTCTCTTATGTTCTTTAGAGGATTTAGTTCCCAAAGGAAGCTACGCTTCTTACCTAACAAGTTTTACATGAATGAGTTAACACTTGGATTGGTTTTTGATGAAGTTGCCCTTATTGGTTGACCTGTTTTGTTGTATTCTCTATTAGACAATGAAGGAAAACTTGAATCACATTCTTTGGAGATGTGAGTTCGCGAGATCCGTGTGGAATTCTCTCATGGGGTCACTAGTGATATGTTTGTGGAGTTCTTCCTCCATTTACTTTTTTGTCTTCCTCCATTTACTTTTTTGTGAGAAAGGCAGGTTCTTATGGCTTGTTGGGTTGTGTGCTATTTTGGGGGAGCGTTGGTGAGAGAGGAATAATAGGGCATTTGGTGGTTGAAGAGAGACCCTAGTGATGTTTGTCCCTTGTTAGATTTCATATTTCTCTTCGAATATCCTTATTGAAGATCTTTTGTAACTATTCTATAGGTACTACTTTGTACAATTAAACCCCTTTCTTGAGTAGGGCTCCCTTTTATGGACTTGGTTTTTTGTATGGCCTTATATTTTTCATTTTTCTCTCTTGTTTTAATCCAAAAATAAATAAAATCGTTAGGTAGGGCGCATACTTCTAGTTGGGGGTCCAGTCTTGGACCTCTAGTGAGAACATTGAGAAACACTAGAATCACCATCCAATAACCAGAAACTAGAATAGAGAGAGACTGAACTTCTTGCCAAAATTGAGGACTTTCTAGAGCATGTGAGGGGCCATAAATTTTGTTTCTGAATTCTAGCAATAAAAATTCAAAGAAAACTCTGTTCTCTCAGTCCCAAAACTTAAATGCAGATTATTTATCTGATGGATGCTCATTTTGAACAGTATAAAGTAAATTTGCACGTCTTCAAATTTTGAATACAAACTTGTACTTCTTACATTGTGCAAAATTTATGTGAAAGTTTGTTTAGATTGAAGTTAAAGGCAATACTGCAGAACCCAATATGTCACGTCTATTTAATTATGAATCAATTCGAAAAATGGCATCTACTTGAACACTGGGAAAAAAAGAACGAGGCTATCATTCTGGCACTGATCGTTTTCATGATGAATTAGTGAGTGTAATGGTTAACATTGAGAATAGGCTGAATGGGATAAAGGCTTCTTTTGTCATAATCGTTCTAGAAACAAAAAGTTCTTCCTTATTTCAGCACAATTATTCATTGGTTTTGTATAAACCGTTTGTTCTTGGATAAACTGCTGAAATACTTCGCAATTCAATTGCTCATTGTTGTTTTGCTGTTTTGCAGATATTGAAGTTACAGCAGAGGATTCAATCTCAGCAGGCTGGAAAAGCTAAAGTGTAACATGTTTTATTGTTGTTTTTCAGCTGTACGTCCTAAACTTCTGTTTTTCTTTTTGCTATCTCTCTTGTACCAGTTAAAAGTTACACTGCACACTCAAAAGCTTGACAATATTTAATTAGTTCGATTTTGATTATAGATACATGCACTTCCTATGTTGAACATT

mRNA sequence

TTTTTTTTCCAATTTAAAATTGTTAATAAACTAGTAACTGAGCAGCCTACCGCGCGCAAGTTTCCTAGGCAACGGAGGAAGTCGACGATTCATCGAGAATGGGTTCCACAAGTGCTGTTCGAGAGCTACAGCGCGAGCTGGAGACGAAAGCCAACGATCTCAGCAAGCTACAGAAAGATATTGCGAAGAACCACCAAATTAGGAAGAAGTACACTATTCAGCTGGGTGAGAACGAGCTCGTCCTTAAGGAATTGGATCTACTTAAAGATGACGCAAATGTATATAAACTGATTGGTCCAGTGCTCGTTAAGCAAGATTTGGCAGAAGCAAATGCCAATGTTCGCAAGAGAATTGATTACATTTCTGCAGAATTGAAACGTCTTGATTCAGCCCTTCAAGATTTGGAAGAGAAGCAAAATAGCAAGAGAGATGCGATATTGAAGTTACAGCAGAGGATTCAATCTCAGCAGGCTGGAAAAGCTAAAGTGTAACATGTTTTATTGTTGTTTTTCAGCTGTACGTCCTAAACTTCTGTTTTTCTTTTTGCTATCTCTCTTGTACCAGTTAAAAGTTACACTGCACACTCAAAAGCTTGACAATATTTAATTAGTTCGATTTTGATTATAGATACATGCACTTCCTATGTTGAACATT

Coding sequence (CDS)

ATGGGTTCCACAAGTGCTGTTCGAGAGCTACAGCGCGAGCTGGAGACGAAAGCCAACGATCTCAGCAAGCTACAGAAAGATATTGCGAAGAACCACCAAATTAGGAAGAAGTACACTATTCAGCTGGGTGAGAACGAGCTCGTCCTTAAGGAATTGGATCTACTTAAAGATGACGCAAATGTATATAAACTGATTGGTCCAGTGCTCGTTAAGCAAGATTTGGCAGAAGCAAATGCCAATGTTCGCAAGAGAATTGATTACATTTCTGCAGAATTGAAACGTCTTGATTCAGCCCTTCAAGATTTGGAAGAGAAGCAAAATAGCAAGAGAGATGCGATATTGAAGTTACAGCAGAGGATTCAATCTCAGCAGGCTGGAAAAGCTAAAGTGTAA

Protein sequence

MGSTSAVRELQRELETKANDLSKLQKDIAKNHQIRKKYTIQLGENELVLKELDLLKDDANVYKLIGPVLVKQDLAEANANVRKRIDYISAELKRLDSALQDLEEKQNSKRDAILKLQQRIQSQQAGKAKV
Homology
[Close]
BLAST of Cp4.1LG20g05010 vs. Swiss-Prot
Match: PFD6_BOVIN (Prefoldin subunit 6 OS=Bos taurus GN=PFDN6 PE=2 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.4e-20
Identity = 56/119 (47.06%), Postives = 82/119 (68.91%), Query Frame = 1 

Query: 10  LQRELETKANDLSKLQKDIAKNHQIRKKYTIQLGENELVLKELDLLKDDANVYKLIGPVL 69
           +Q++L+ +     +LQKD++K+   R+K   QL EN +V +EL LL     V+KL+GPVL
Sbjct: 5   IQKKLQGEVEKYQQLQKDLSKSMSGRQKLEAQLTENNIVKEELALLDGSNVVFKLLGPVL 64

Query: 70  VKQDLAEANANVRKRIDYISAELKRLDSALQDLEEKQNSKRDAILKLQQRIQSQQAGKA 129
           VKQ+L EA A V KR+DYI+AE+KR +S L+DLE++   +R+ + +LQQ  Q  QA KA
Sbjct: 65  VKQELGEARATVGKRLDYITAEIKRYESQLRDLEQQSEQQRETLAQLQQEFQRAQAAKA 123

[Close]
BLAST of Cp4.1LG20g05010 vs. Swiss-Prot
Match: PFD6_MOUSE (Prefoldin subunit 6 OS=Mus musculus GN=Pfdn6 PE=1 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.4e-20
Identity = 56/119 (47.06%), Postives = 81/119 (68.07%), Query Frame = 1 

Query: 10  LQRELETKANDLSKLQKDIAKNHQIRKKYTIQLGENELVLKELDLLKDDANVYKLIGPVL 69
           +Q++L+ +     +LQKD++K+   R+K   QL EN +V +EL LL     V+KL+GPVL
Sbjct: 5   IQKKLQGEVEKYQQLQKDLSKSMSGRQKLEAQLTENNIVKEELALLDGSNVVFKLLGPVL 64

Query: 70  VKQDLAEANANVRKRIDYISAELKRLDSALQDLEEKQNSKRDAILKLQQRIQSQQAGKA 129
           VKQ+L EA A V KR+DYI+AE+KR +S L+DLE +   +R+ + +LQQ  Q  QA KA
Sbjct: 65  VKQELGEARATVGKRLDYITAEIKRYESQLRDLERQSEQQRETLAQLQQEFQRAQAAKA 123

[Close]
BLAST of Cp4.1LG20g05010 vs. Swiss-Prot
Match: PFD6_HUMAN (Prefoldin subunit 6 OS=Homo sapiens GN=PFDN6 PE=1 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.4e-20
Identity = 56/119 (47.06%), Postives = 81/119 (68.07%), Query Frame = 1 

Query: 10  LQRELETKANDLSKLQKDIAKNHQIRKKYTIQLGENELVLKELDLLKDDANVYKLIGPVL 69
           +Q++L+ +     +LQKD++K+   R+K   QL EN +V +EL LL     V+KL+GPVL
Sbjct: 5   IQKKLQGEVEKYQQLQKDLSKSMSGRQKLEAQLTENNIVKEELALLDGSNVVFKLLGPVL 64

Query: 70  VKQDLAEANANVRKRIDYISAELKRLDSALQDLEEKQNSKRDAILKLQQRIQSQQAGKA 129
           VKQ+L EA A V KR+DYI+AE+KR +S L+DLE +   +R+ + +LQQ  Q  QA KA
Sbjct: 65  VKQELGEARATVGKRLDYITAEIKRYESQLRDLERQSEQQRETLAQLQQEFQRAQAAKA 123

[Close]
BLAST of Cp4.1LG20g05010 vs. Swiss-Prot
Match: PFD6_CANLF (Prefoldin subunit 6 OS=Canis lupus familiaris GN=PFDN6 PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.4e-20
Identity = 56/119 (47.06%), Postives = 81/119 (68.07%), Query Frame = 1 

Query: 10  LQRELETKANDLSKLQKDIAKNHQIRKKYTIQLGENELVLKELDLLKDDANVYKLIGPVL 69
           +Q++L+ +     +LQKD++K+   R+K   QL EN +V +EL LL     V+KL+GPVL
Sbjct: 5   IQKKLQGEVEKYQQLQKDLSKSMSGRQKLEAQLTENNIVKEELALLDGSNVVFKLLGPVL 64

Query: 70  VKQDLAEANANVRKRIDYISAELKRLDSALQDLEEKQNSKRDAILKLQQRIQSQQAGKA 129
           VKQ+L EA A V KR+DYI+AE+KR +S L+DLE +   +R+ + +LQQ  Q  QA KA
Sbjct: 65  VKQELGEARATVGKRLDYITAEIKRYESQLRDLERQSEQQRETLAQLQQEFQRAQAAKA 123

[Close]
BLAST of Cp4.1LG20g05010 vs. Swiss-Prot
Match: PFD6_DROME (Probable prefoldin subunit 6 OS=Drosophila melanogaster GN=CG7770 PE=2 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 4.0e-15
Identity = 53/119 (44.54%), Postives = 73/119 (61.34%), Query Frame = 1 

Query: 3   STSAVRELQRELETKANDLSKLQKDIAKNHQIRKKYTIQLGENELVLKELDLLKDDANVY 62
           S +  +++Q E+E+  N    LQK   K  + R     QL EN+ VL EL+LL  D  VY
Sbjct: 5   SAALYKKMQAEIESYQN----LQKSCLKMVKQRAVLESQLNENKCVLDELNLLGPDNKVY 64

Query: 63  KLIGPVLVKQDLAEANANVRKRIDYISAELKRLDSALQDLEEKQNSKRDAILKLQQRIQ 122
           KL GPVLVKQ+L E+  NV KRI+YIS ELK    AL+++E+     R+++ K QQ+ Q
Sbjct: 65  KLFGPVLVKQELEESRQNVGKRIEYISKELKSSTDALENMEKDMLKHRESVAKYQQQCQ 119

[Close]
BLAST of Cp4.1LG20g05010 vs. TrEMBL
Match: A0A059C611_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E02397 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.3e-52
Identity = 115/129 (89.15%), Postives = 123/129 (95.35%), Query Frame = 1 

Query: 1   MGSTSAVRELQRELETKANDLSKLQKDIAKNHQIRKKYTIQLGENELVLKELDLLKDDAN 60
           M ++SA+R+LQR+LE KANDLSKLQKDIAKNHQ+RKKYTIQLGENELVLKELDLL +DAN
Sbjct: 1   MSTSSALRDLQRDLENKANDLSKLQKDIAKNHQVRKKYTIQLGENELVLKELDLLNEDAN 60

Query: 61  VYKLIGPVLVKQDLAEANANVRKRIDYISAELKRLDSALQDLEEKQNSKRDAILKLQQRI 120
           VYKLIGPVLVKQDLAEANANVRKRIDYISAELKRLD+ LQDLEEKQNSKRD ILKLQQRI
Sbjct: 61  VYKLIGPVLVKQDLAEANANVRKRIDYISAELKRLDATLQDLEEKQNSKRDMILKLQQRI 120

Query: 121 QSQQAGKAK 130
           QS QAGKAK
Sbjct: 121 QSLQAGKAK 129

[Close]
BLAST of Cp4.1LG20g05010 vs. TrEMBL
Match: B9H401_POPTR (Prefoldin family protein OS=Populus trichocarpa GN=POPTR_0004s13700g PE=4 SV=2)

HSP 1 Score: 209.9 bits (533), Expect = 1.8e-51
Identity = 113/129 (87.60%), Postives = 121/129 (93.80%), Query Frame = 1 

Query: 1   MGSTSAVRELQRELETKANDLSKLQKDIAKNHQIRKKYTIQLGENELVLKELDLLKDDAN 60
           MGS++A+RELQR+LE KANDLSKLQKDIAKNHQ+RKKYTIQLGENELVLKELDLL + AN
Sbjct: 1   MGSSAAIRELQRDLENKANDLSKLQKDIAKNHQVRKKYTIQLGENELVLKELDLLNEGAN 60

Query: 61  VYKLIGPVLVKQDLAEANANVRKRIDYISAELKRLDSALQDLEEKQNSKRDAILKLQQRI 120
           VYKLIGPVLVKQDLAEANANV KRI+YISAELKRLD  LQDLEEKQNSK+DAI KLQQRI
Sbjct: 61  VYKLIGPVLVKQDLAEANANVSKRIEYISAELKRLDGTLQDLEEKQNSKKDAIFKLQQRI 120

Query: 121 QSQQAGKAK 130
           QS QAGKAK
Sbjct: 121 QSFQAGKAK 129

[Close]
BLAST of Cp4.1LG20g05010 vs. TrEMBL
Match: A0A0D2UM46_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G043400 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 4.1e-51
Identity = 112/127 (88.19%), Postives = 124/127 (97.64%), Query Frame = 1 

Query: 3   STSAVRELQRELETKANDLSKLQKDIAKNHQIRKKYTIQLGENELVLKELDLLKDDANVY 62
           S++A+R+LQ +LE KANDLSKLQKDIAKNHQ+RKKYTIQLGENELVLKELDLLK+DANVY
Sbjct: 4   SSTALRDLQSDLENKANDLSKLQKDIAKNHQVRKKYTIQLGENELVLKELDLLKEDANVY 63

Query: 63  KLIGPVLVKQDLAEANANVRKRIDYISAELKRLDSALQDLEEKQNSKRDAILKLQQRIQS 122
           KLIGPVLVKQDLAEANANVRKRI+YISAELKRLDS+LQDLEEKQ+SKR+AILK+QQRIQS
Sbjct: 64  KLIGPVLVKQDLAEANANVRKRIEYISAELKRLDSSLQDLEEKQHSKREAILKVQQRIQS 123

Query: 123 QQAGKAK 130
            QAGKAK
Sbjct: 124 LQAGKAK 130

[Close]
BLAST of Cp4.1LG20g05010 vs. TrEMBL
Match: A0A067GEN5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032938mg PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 7.0e-51
Identity = 112/129 (86.82%), Postives = 121/129 (93.80%), Query Frame = 1 

Query: 1   MGSTSAVRELQRELETKANDLSKLQKDIAKNHQIRKKYTIQLGENELVLKELDLLKDDAN 60
           MGS +A+RELQRELETKANDLSKLQKDI KNHQ+RKKYTIQLGENELVLKEL LL + AN
Sbjct: 1   MGSAAALRELQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGAN 60

Query: 61  VYKLIGPVLVKQDLAEANANVRKRIDYISAELKRLDSALQDLEEKQNSKRDAILKLQQRI 120
           VYKLIGPVLVKQDLAEANANVRKRI+YISAELKRLD+ LQDLEEKQNSK++AI K+QQRI
Sbjct: 61  VYKLIGPVLVKQDLAEANANVRKRIEYISAELKRLDATLQDLEEKQNSKKEAIFKVQQRI 120

Query: 121 QSQQAGKAK 130
           QS QAGKAK
Sbjct: 121 QSLQAGKAK 129

[Close]
BLAST of Cp4.1LG20g05010 vs. TrEMBL
Match: A0A0D2QGV1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G155300 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 7.0e-51
Identity = 111/127 (87.40%), Postives = 123/127 (96.85%), Query Frame = 1 

Query: 3   STSAVRELQRELETKANDLSKLQKDIAKNHQIRKKYTIQLGENELVLKELDLLKDDANVY 62
           S++A+RELQ++LE KANDLSKLQKDIAKNHQ+RKKYTIQLGENELVLKELDLL +DANVY
Sbjct: 4   SSTALRELQQDLENKANDLSKLQKDIAKNHQVRKKYTIQLGENELVLKELDLLNEDANVY 63

Query: 63  KLIGPVLVKQDLAEANANVRKRIDYISAELKRLDSALQDLEEKQNSKRDAILKLQQRIQS 122
           KLIGPVLVKQDLAEANANVRKRI+YISAELKRLD +LQDLEEKQ+SKR+AILK+QQRIQS
Sbjct: 64  KLIGPVLVKQDLAEANANVRKRIEYISAELKRLDGSLQDLEEKQHSKREAILKVQQRIQS 123

Query: 123 QQAGKAK 130
            QAGKAK
Sbjct: 124 HQAGKAK 130

[Close]
BLAST of Cp4.1LG20g05010 vs. TAIR10
Match: AT1G29990.1 (AT1G29990.1 prefoldin 6)

HSP 1 Score: 200.7 bits (509), Expect = 5.6e-52
Identity = 105/127 (82.68%), Postives = 120/127 (94.49%), Query Frame = 1 

Query: 3   STSAVRELQRELETKANDLSKLQKDIAKNHQIRKKYTIQLGENELVLKELDLLKDDANVY 62
           S+S VR+LQR+LE KANDL K+QKDI KNHQ+RKKYTIQLGENELVLKELDLL++DANVY
Sbjct: 2   SSSTVRDLQRDLENKANDLGKIQKDIGKNHQLRKKYTIQLGENELVLKELDLLEEDANVY 61

Query: 63  KLIGPVLVKQDLAEANANVRKRIDYISAELKRLDSALQDLEEKQNSKRDAILKLQQRIQS 122
           KLIGPVLVKQDLAEANANVRKRI+YISAELKRLD+ LQD+EEKQN+KR+ I+KLQQR+Q+
Sbjct: 62  KLIGPVLVKQDLAEANANVRKRIEYISAELKRLDAILQDMEEKQNNKRETIMKLQQRLQT 121

Query: 123 QQAGKAK 130
            QAGKAK
Sbjct: 122 IQAGKAK 128

[Close]
BLAST of Cp4.1LG20g05010 vs. NCBI nr
Match: gi|659068358|ref|XP_008444032.1| (PREDICTED: prefoldin subunit 6 [Cucumis melo])

HSP 1 Score: 219.9 bits (559), Expect = 2.5e-54
Identity = 119/129 (92.25%), Postives = 124/129 (96.12%), Query Frame = 1 

Query: 1   MGSTSAVRELQRELETKANDLSKLQKDIAKNHQIRKKYTIQLGENELVLKELDLLKDDAN 60
           M STSA+RELQRELE KANDLSKLQKDIAKNHQ+RKKYT+QLGENELVLKELDLL+DD N
Sbjct: 1   MSSTSALRELQRELEAKANDLSKLQKDIAKNHQVRKKYTVQLGENELVLKELDLLQDDTN 60

Query: 61  VYKLIGPVLVKQDLAEANANVRKRIDYISAELKRLDSALQDLEEKQNSKRDAILKLQQRI 120
           VYKLIGPVLVKQDLAEANANVRKRI+YISAELKRLDSALQDLEEKQNS RDAILKLQQRI
Sbjct: 61  VYKLIGPVLVKQDLAEANANVRKRIEYISAELKRLDSALQDLEEKQNSNRDAILKLQQRI 120

Query: 121 QSQQAGKAK 130
           QS QAGKAK
Sbjct: 121 QSLQAGKAK 129

[Close]
BLAST of Cp4.1LG20g05010 vs. NCBI nr
Match: gi|802596172|ref|XP_012072099.1| (PREDICTED: prefoldin subunit 6 [Jatropha curcas])

HSP 1 Score: 214.2 bits (544), Expect = 1.4e-52
Identity = 114/129 (88.37%), Postives = 124/129 (96.12%), Query Frame = 1 

Query: 1   MGSTSAVRELQRELETKANDLSKLQKDIAKNHQIRKKYTIQLGENELVLKELDLLKDDAN 60
           M S++A+RELQR+LE KANDLSK QKDIAKNHQ+RKKYT+QLGENELVLKELDLLK+DAN
Sbjct: 1   MASSTAIRELQRDLENKANDLSKHQKDIAKNHQVRKKYTVQLGENELVLKELDLLKEDAN 60

Query: 61  VYKLIGPVLVKQDLAEANANVRKRIDYISAELKRLDSALQDLEEKQNSKRDAILKLQQRI 120
           VYKLIGPVLVKQDLAEANANVRKRIDYISAELKRLD+ LQDLEEKQNSK+DAILKLQQRI
Sbjct: 61  VYKLIGPVLVKQDLAEANANVRKRIDYISAELKRLDATLQDLEEKQNSKKDAILKLQQRI 120

Query: 121 QSQQAGKAK 130
           Q+ QAGKAK
Sbjct: 121 QTLQAGKAK 129

[Close]
BLAST of Cp4.1LG20g05010 vs. NCBI nr
Match: gi|743919292|ref|XP_011003668.1| (PREDICTED: prefoldin subunit 6 [Populus euphratica])

HSP 1 Score: 214.2 bits (544), Expect = 1.4e-52
Identity = 115/129 (89.15%), Postives = 123/129 (95.35%), Query Frame = 1 

Query: 1   MGSTSAVRELQRELETKANDLSKLQKDIAKNHQIRKKYTIQLGENELVLKELDLLKDDAN 60
           MGS++A+RELQR+LE KANDLSKLQKDIAKNHQ+RKKYTIQLGENELVLKELDLLK+ AN
Sbjct: 1   MGSSTAIRELQRDLENKANDLSKLQKDIAKNHQVRKKYTIQLGENELVLKELDLLKEGAN 60

Query: 61  VYKLIGPVLVKQDLAEANANVRKRIDYISAELKRLDSALQDLEEKQNSKRDAILKLQQRI 120
           VYKLIGPVLVKQDLAEANANVRKRI+YISAELKRLD  LQDLEEKQNSK+DAI KLQQRI
Sbjct: 61  VYKLIGPVLVKQDLAEANANVRKRIEYISAELKRLDGTLQDLEEKQNSKKDAIFKLQQRI 120

Query: 121 QSQQAGKAK 130
           QS QAGKAK
Sbjct: 121 QSFQAGKAK 129

[Close]
BLAST of Cp4.1LG20g05010 vs. NCBI nr
Match: gi|702344701|ref|XP_010056888.1| (PREDICTED: prefoldin subunit 6 [Eucalyptus grandis])

HSP 1 Score: 213.8 bits (543), Expect = 1.8e-52
Identity = 115/129 (89.15%), Postives = 123/129 (95.35%), Query Frame = 1 

Query: 1   MGSTSAVRELQRELETKANDLSKLQKDIAKNHQIRKKYTIQLGENELVLKELDLLKDDAN 60
           M ++SA+R+LQR+LE KANDLSKLQKDIAKNHQ+RKKYTIQLGENELVLKELDLL +DAN
Sbjct: 1   MSTSSALRDLQRDLENKANDLSKLQKDIAKNHQVRKKYTIQLGENELVLKELDLLNEDAN 60

Query: 61  VYKLIGPVLVKQDLAEANANVRKRIDYISAELKRLDSALQDLEEKQNSKRDAILKLQQRI 120
           VYKLIGPVLVKQDLAEANANVRKRIDYISAELKRLD+ LQDLEEKQNSKRD ILKLQQRI
Sbjct: 61  VYKLIGPVLVKQDLAEANANVRKRIDYISAELKRLDATLQDLEEKQNSKRDMILKLQQRI 120

Query: 121 QSQQAGKAK 130
           QS QAGKAK
Sbjct: 121 QSLQAGKAK 129

[Close]
BLAST of Cp4.1LG20g05010 vs. NCBI nr
Match: gi|449459354|ref|XP_004147411.1| (PREDICTED: prefoldin subunit 6 [Cucumis sativus])

HSP 1 Score: 212.6 bits (540), Expect = 4.1e-52
Identity = 114/129 (88.37%), Postives = 122/129 (94.57%), Query Frame = 1 

Query: 1   MGSTSAVRELQRELETKANDLSKLQKDIAKNHQIRKKYTIQLGENELVLKELDLLKDDAN 60
           M S++A+RE+QRELE KANDLSKLQKDIAKNHQ+RKKYTIQLGENELVLKELDLL+DD N
Sbjct: 1   MSSSTALREVQRELEAKANDLSKLQKDIAKNHQVRKKYTIQLGENELVLKELDLLQDDTN 60

Query: 61  VYKLIGPVLVKQDLAEANANVRKRIDYISAELKRLDSALQDLEEKQNSKRDAILKLQQRI 120
           VYKLIGPVLVKQDLAEANANVRKRI+YISAELKRLDS LQDLEEKQN KRD +LKLQQRI
Sbjct: 61  VYKLIGPVLVKQDLAEANANVRKRIEYISAELKRLDSILQDLEEKQNRKRDVVLKLQQRI 120

Query: 121 QSQQAGKAK 130
           QS QAGKAK
Sbjct: 121 QSLQAGKAK 129

The following BLAST results are available for this feature:
BLAST of Cp4.1LG20g05010 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PFD6_BOVIN1.4e-2047.06Prefoldin subunit 6 OS=Bos taurus GN=PFDN6 PE=2 SV=1[more]
PFD6_MOUSE2.4e-2047.06Prefoldin subunit 6 OS=Mus musculus GN=Pfdn6 PE=1 SV=1[more]
PFD6_HUMAN2.4e-2047.06Prefoldin subunit 6 OS=Homo sapiens GN=PFDN6 PE=1 SV=1[more]
PFD6_CANLF2.4e-2047.06Prefoldin subunit 6 OS=Canis lupus familiaris GN=PFDN6 PE=3 SV=1[more]
PFD6_DROME4.0e-1544.54Probable prefoldin subunit 6 OS=Drosophila melanogaster GN=CG7770 PE=2 SV=1[more]
BLAST of Cp4.1LG20g05010 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A059C611_EUCGR1.3e-5289.15Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E02397 PE=4 SV=1[more]
B9H401_POPTR1.8e-5187.60Prefoldin family protein OS=Populus trichocarpa GN=POPTR_0004s13700g PE=4 SV=2[more]
A0A0D2UM46_GOSRA4.1e-5188.19Uncharacterized protein OS=Gossypium raimondii GN=B456_011G043400 PE=4 SV=1[more]
A0A067GEN5_CITSI7.0e-5186.82Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032938mg PE=4 SV=1[more]
A0A0D2QGV1_GOSRA7.0e-5187.40Uncharacterized protein OS=Gossypium raimondii GN=B456_009G155300 PE=4 SV=1[more]
BLAST of Cp4.1LG20g05010 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G29990.15.6e-5282.68 prefoldin 6[more]
BLAST of Cp4.1LG20g05010 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659068358|ref|XP_008444032.1|2.5e-5492.25PREDICTED: prefoldin subunit 6 [Cucumis melo][more]
gi|802596172|ref|XP_012072099.1|1.4e-5288.37PREDICTED: prefoldin subunit 6 [Jatropha curcas][more]
gi|743919292|ref|XP_011003668.1|1.4e-5289.15PREDICTED: prefoldin subunit 6 [Populus euphratica][more]
gi|702344701|ref|XP_010056888.1|1.8e-5289.15PREDICTED: prefoldin subunit 6 [Eucalyptus grandis][more]
gi|449459354|ref|XP_004147411.1|4.1e-5288.37PREDICTED: prefoldin subunit 6 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0051082unfolded protein binding
Vocabulary: Cellular Component
TermDefinition
GO:0016272prefoldin complex
Vocabulary: Biological Process
TermDefinition
GO:0006457protein folding
Vocabulary: INTERPRO
TermDefinition
IPR009053Prefoldin
IPR002777PFD_beta-like
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043622 cortical microtubule organization
biological_process GO:0006094 gluconeogenesis
biological_process GO:0006096 glycolytic process
biological_process GO:0006457 protein folding
biological_process GO:0046686 response to cadmium ion
biological_process GO:0009651 response to salt stress
biological_process GO:0050896 response to stimulus
biological_process GO:0044723 single-organism carbohydrate metabolic process
biological_process GO:0044763 single-organism cellular process
cellular_component GO:0005829 cytosol
cellular_component GO:0016272 prefoldin complex
cellular_component GO:0005737 cytoplasm
molecular_function GO:0051082 unfolded protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG20g05010.1Cp4.1LG20g05010.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002777Prefoldin beta-likePFAMPF01920Prefoldin_2coord: 16..118
score: 1.7
IPR009053PrefoldinGENE3DG3DSA:1.10.287.370coord: 9..122
score: 2.4
IPR009053PrefoldinunknownSSF46579Prefoldincoord: 14..118
score: 8.11
NoneNo IPR availableunknownCoilCoilcoord: 85..119
score: -coord: 7..27
scor
NoneNo IPR availablePANTHERPTHR21431PREFOLDIN SUBUNIT 6coord: 3..128
score: 9.2
NoneNo IPR availablePANTHERPTHR21431:SF0PREFOLDIN SUBUNIT 6coord: 3..128
score: 9.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG20g05010gCucsa.212390.2Cucumber (Gy14) v1cgycpeB0590
Cp4.1LG20g05010CmaCh13G005560Cucurbita maxima (Rimu)cmacpeB234
Cp4.1LG20g05010CmaCh18G004620Cucurbita maxima (Rimu)cmacpeB438
Cp4.1LG20g05010CmoCh03G013880Cucurbita moschata (Rifu)cmocpeB628
Cp4.1LG20g05010CmoCh13G005880Cucurbita moschata (Rifu)cmocpeB201
Cp4.1LG20g05010CmoCh18G004390Cucurbita moschata (Rifu)cmocpeB403
Cp4.1LG20g05010Cla019606Watermelon (97103) v1cpewmB508
Cp4.1LG20g05010Csa1G448940Cucumber (Chinese Long) v2cpecuB514
Cp4.1LG20g05010MELO3C002717Melon (DHL92) v3.5.1cpemeB477
Cp4.1LG20g05010ClCG03G007080Watermelon (Charleston Gray)cpewcgB468
Cp4.1LG20g05010CSPI01G21400Wild cucumber (PI 183967)cpecpiB516
Cp4.1LG20g05010Lsi02G008680Bottle gourd (USVL1VR-Ls)cpelsiB417
Cp4.1LG20g05010MELO3C002717.2Melon (DHL92) v3.6.1cpemedB559
Cp4.1LG20g05010CsaV3_1G032650Cucumber (Chinese Long) v3cpecucB0633
Cp4.1LG20g05010Bhi08G001720Wax gourdcpewgoB0649
Cp4.1LG20g05010CsGy1G021110Cucumber (Gy14) v2cgybcpeB079
Cp4.1LG20g05010Carg19924Silver-seed gourdcarcpeB1123
Cp4.1LG20g05010Carg14543Silver-seed gourdcarcpeB0215
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG20g05010Cp4.1LG09g07810Cucurbita pepo (Zucchini)cpecpeB048
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG20g05010Silver-seed gourdcarcpeB0775
Cp4.1LG20g05010Silver-seed gourdcarcpeB1327
Cp4.1LG20g05010Cucumber (Chinese Long) v3cpecucB0650
Cp4.1LG20g05010Wax gourdcpewgoB0629
Cp4.1LG20g05010Wax gourdcpewgoB0630
Cp4.1LG20g05010Cucurbita pepo (Zucchini)cpecpeB088
Cp4.1LG20g05010Cucurbita pepo (Zucchini)cpecpeB298
Cp4.1LG20g05010Cucurbita pepo (Zucchini)cpecpeB412
Cp4.1LG20g05010Cucumber (Gy14) v1cgycpeB0040
Cp4.1LG20g05010Cucurbita maxima (Rimu)cmacpeB675
Cp4.1LG20g05010Cucurbita maxima (Rimu)cmacpeB881
Cp4.1LG20g05010Cucurbita moschata (Rifu)cmocpeB818
Cp4.1LG20g05010Wild cucumber (PI 183967)cpecpiB527
Cp4.1LG20g05010Cucumber (Chinese Long) v2cpecuB525
Cp4.1LG20g05010Bottle gourd (USVL1VR-Ls)cpelsiB415
Cp4.1LG20g05010Watermelon (Charleston Gray)cpewcgB450
Cp4.1LG20g05010Watermelon (97103) v1cpewmB513
Cp4.1LG20g05010Melon (DHL92) v3.5.1cpemeB485
Cp4.1LG20g05010Cucumber (Gy14) v2cgybcpeB813
Cp4.1LG20g05010Melon (DHL92) v3.6.1cpemedB572