CmoCh13G005880 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh13G005880
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Prefoldin subunit 6
Location	Cmo_Chr13 : 6546680 .. 6553663 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTCCACAAGTGCTGTTCGAGAGCTACAGCGCGAGCTGGAGTCGAAAGCCAACGATCTCAGCAAGCTACAGAAAGGCAAGTCTCTAATCGATTCTCGTTTCCTCCACGTTCATTCGATTAGCACGATTTATTGAAACACCAATATTTCAATCCATATACTGTGTCGCCTGTTCTATCTGGATTCGATACTGTCAATTTTCTTTCACGAAAAGCCTAACGTGGTAATGGATTTTTCAGATATTGCGAAGAACCACCAAATTAGGAAGAAGTACACTATTCAGCTGGGTGAGAACGAGCTCGTCCTTAAGGTTTTTCCACGCCTCTGACCTGTTTCCCTCGTAGATTAAACTGTATGCTTGTGCATAGTTCTGTAGCAAGGAGGGCAAGCCTTCAGTGCATGTTTTTCACTTTATTTGACATGTGGTTTAGATTATGGAATTTCTTTACATTTATATAATCTGGTATACATTAAGAATTTGAAGCATTCTTATCAGCGGACATTTTTCTCATTCATTGTTACTATGTGTGAACTTGTTTTTTTTTTCCTGATTTTCTTCCTTGGCTACGTACGCAGGAATTGGATCTACTTAAAGATGACGCAAATGTATATAAACTGATTGGTCCAGTTCTCGTGAAGCAAGATTTGGCAGAAGCAAATGCCAATGTTCGCAAGAGAATTGATTACATTTCTGCAGAATTGTATGTTTTTTTCTTTATTTTTCCGTTTACATTATTAGTTCATGGATAGTAGTGATAATAATACTATAGCAACAACCATTTGAGAACCTTCATCAGACTAATTACCTAATAAAATATATATACTTTTAATATCTCTCTCGCAGTTATCAAGTTGCTACTTAGTTTTAAATGAAGTGTTTTTTTTTTTTACCTTTTGGATGGCTCTATCTTAGCCAGAAATAGCTGATCATGTTATGGACTTTGTATATGTTGAAACTATGTTGGATTTTACTGGAAGCAAGATGGAGGAGACAAGAAGGGTGTGGTGTCATTAGACAGTTTCATCTAATTGATATGGATATTGTCCTTGCCTATAAACAACCCCTTTAAGAGTATCAATTTGCATACCTTGCCAAGCATACTTTCTGAAACATTAGCTTTGAGTATGACCATGAAAAGAAACGGAGCAAGAGAAACACCTTGTTTACAACCTTTAGAGACATGGTAAGACCTATTGGATTATTTATTGTCGAGGAAGATGGAATAAAAATGTGGGAGATGCAGGCATGCCTACAAGATCTCCAAATTATTCAGTAGCCAGTGGACACTTCTTTGCATATAGGTTCTTTGCCAAGCTGACCCATTCACTAGCCAATGAACACTTCTTTTGCCATCCCAGGATGGGCAACTGCCAAGGAAATTTGACTCAACTTTAATGACATGTCTGCTATTTGATTTTTCATTTGAAATGTTGATAGCATTTTTCATCACATGTCATTTACTCTGGAGTTCTACTCTATCAACTCCCTATCTTGAAGGTTCATAAGCTTTTAGCTGGATCATATATGGAAAAAAACCCACATTTATTAGGAATTTGAATTTCTGTGGTAAGTTCTCTTATTGAATTGTGGTTGGAAAGGAACATAAGATTTTTTTAAGAAAAACATCTTCCTTGGGTTGATTGGTTTGAAACAGCAAGCTGTCATGCTTCATCTTCATGCTCATTTTCTAAATCTTATGCTTATTTTTCATCCTATGATATACGTATTAACTAGATCGCCTTTCTATTTCCATTGTAATGATATTTATTCACTCTTTTGTGAGTTTGTATCATTTGAGCAGTCAGCTCTTTTCATTTGTTCAATGAAAAGTTTTGTTTATTGTTTAAGAAAATATTTTGTTTGGTAATCAATCAAGCAAAATCTGAGTCTATTTGGTAGGAGCTGGTTCCTTTCATCTTTAATTTATTTGTTTTTTAAAAAAGAGACGACATATACTTCCAAACAAAAGAAAAGTTACTAACTAGAGGTTCAAGTAGAGGAAACCTCTACCGAAGGACATTATTAAAAGAAAACCTTCCAATCTATATCCTTACATTTTATTGTTTATCAATCGCAACATTCCACTTCCATATACCTTAATAATTGTGTATTAATTCAATGATTTTTTCACAATTCAGGAAACGTCTTGATTCAGCCCTTCAAGATTTGGAAGAGAAGCAAAATAGCAAGAGAGATGCGGTTTGTACTTTTCATACTTCTTTAGATCTTAAAGCTCACCTTCGACTGATATTTGCAGGACCCCAAAAGAAAGGAATAAAACATTTTTGTGCCTGATTCTTGCTTGTTTGTTGGAGGATCCAGAAATGATTTCTTGTCTTCAGATATGTTGAATACACAAGGCTGTAAAATGTGTCTGGAGAAAAAAATTTTGAAAACAGAGAAACTGAAATCTGAACTTGATTTAAAACCATAGGAAAATATAGAAAATGACTAAATTTAGAGAAGTTTTTTTTTAGCATGCTGCCTCATCCCCTTTTCCTTCTTTTCCTTGACATGAAACTAAGTTCAAGATGCATGGCCTTTTCCTGTCTGCTACCTTTCATCTAGGTTTTCATCTAGGTTGAACTCATGAAGAAATAATTGAAGTTGGACTGAATAGTTGGTTTTAAAACTACAATGAAAGTCCTTTCCGAATTGAAGCATTGAGGATAGAAGTTAAAAAAATGAGAAAAAGAATGCCTACATCGAGAGAATAGAGTTCATGCTTTTCCTTTTTGTTTCATAAGATCTTTCTATGGTTCCTCCATAAATGATTAAATAGGGTTCTTCCTCTTTATGAGATCATAGAGCCAGTTCTTATTTTATTTTATTTTTTATTTATTTACTTTTTTAAAAAAATCTTACGTGTTTCCTTTCCTCTATAAATGAGTTAAATAATTGATGTATGAAATTAAGAAAAGAGGGGTAGAGACGCCTCGACCTAAAGGTGTTACAATAAACTTCTTCAAGCAAATATAAAACTATAAGCTATAAGAATGAGAACTTAGAGACAATTTACACCTGGAAATTGGTGAAGAAGATAATGTTGTAAAAAAAGATCTAGCATAAGATTGCTGTTTTCTTTGCAAAGACCCTGTGGTTCCTTTCAGTCCAAGTAGCCCAAAAGAAGGCTTTAACCATATGCATTCAAAGAAGCCTTTTCTTCTTCTTGAAGGGATGGCTCGATAGTGTTAATAATAGGATCAATTTACTGGTTTACAAAATTGATTTTGAAAAGGCCTACAATCACGTTGATGGGACTTTCTTGGGTAAAGTTTTGGAAAGAAAGGGTTTGAAGTGGAGGATGTGGATGTGGAGTTGTACGTGGAATATGAGTTACTCTTTTCTCCTAAAGTGGGGTCCGAGGGGGTAAGATCAAGGCTTCCAGAAGCCTTAGACAGGAAGACCATTTATCCACTTTTCTTATTCTGCTTGTTGTGGATGTTTTGAGCAGGCTTGTTTTCAACGACGTTGAAGGAAAAATTATTGAGCCCTTTGAGGTTTGTAAGGAGAATGTGGATTTATCCAACCTTAAATTTGCTGATGACACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTGCCATGGTAAGGAGAGCCTATTCTTCATCTTAAACAATATTTTGGCTTTCTTTGAAGCCATGGGCTTAAGATTAGTAGGAGTAAATATCAGATTAGGAGGCTCAATTGTGATTCATTAGTAGATGGCAGACGTGGTGGGCTGTGATATAAGATCCTTTCCCACATCTTGCTAAAGTCTCCCTCTTGGAAATAATTTCAAATCTATTTCTTGGAACTCAGTGGTGGACAAAGTTAAAAAAAAGATCGGCTTCTTGGAGGAAATGTTTTTTCTCCAAAGCTGGGTTCTGAGTAGTATTCCTATTTATTACTTCATCCTATTTGGGGCCTCGTGCTTGGTTTGTAAGAATATTGAGAAGCTTATACGAAATTTCCTTTGGGAATATGAGTGGAAGAAGGAAAGGGGCGCACTTGGTTAGGTGGGAGATCATTCGGGAACCATGTGAACCTGGGGGGTTAGAAATTGGTAATTTAACAACTCTAACAAAGCTTTGTTAGCTAAATGCATAGGATTATCGCTAGCAAGTATGACCCTTATCCTTTTGAGAGGTTGTCGAGTGAGGTTAAAGACACTTATCGAAACCTGCGGAAGAATATTTCTAACAAGCTCTCTTCTTTCTCCCACTCGGTTCATTTTGTGATGGGGGAGGGGAAGGAAGCATATTTTTGGGAAGATCAGTGGGTTGGGGATAGACCCATCTGCTTGACATTTTTCCATCTCTATCATTTGTCGTTCTTTAAAAATTGTTTGGTGACTGATATTTTAGGTTGGTCGGGGAGTTTGGTTTCCTTCTCCTTTGGGTTCCATCACTTGTTGTACGATAGGGAAGTAACAAATGTTGTCTCTCTCTTTTGTCTTTGATTGGGGAGATTGATTTTGGGCTCGGGAGAAGCGATGCTTGTGTTTGGAGTCTCAACCCTTAGAAAGGATTCTCTTGTAAATCTTTCTTTCGTTGTTTGATGGACCCTTCTCTCGCTAGGAAATATGTCTCTTATGCTCTTTAGAGGATTTAGTTCCCAAAGGAAGCTACGCTTCTTACCTAACAAGTTTTACATGAATGAGTTAACACTTGGATTGGTTTTTGAGGAAGTTGCCCTTATTGGTTGACCTGTTTTGTTGTATTCTCTATCAGACAATGAAGGAAGACTTGAATCACATTCTTTGGAGATGTGAGTTCGCGAGATCCGTGTGGAATTCTCTCATAGGGTCACTAGTGATATGTTTGTGGAGTTCTTCCTCCATTTACTTTTTTGTGAGAAAGGCAGGTTCTTATGGCTTGTTGGGTTGTGTGCTATTTTGGGGGAGCGTTGGCGAGAGAGGAATAATAGGCATTTGGAGGTTGAAGAGAGACCCTAGTGATGTTTGTCCCTTGTTAGATTTCATATTTCTCTTCGAATATCCTTATTGAAGATCTTTTGTAACTATTCTATAGGTGTACTACTTTGTACAATTAAAGCCCCTTTCTTGAGTAGGGCTCCCTTTTATGGACTTGTTTTTTTGTATGGCCTTATGTTTTTCATTTTTCTCTCTTGTTTTAATCCAAAAATAAATAAAATCGTTAGGTAGGGCTGCAGTTCAGTTATTGAGGGATTTCTATTTAGGCTGCTTGATTAATGAAGGACATAAAATGGCGCATACTTCTAGTTGGGGATCCAGTCTTGGACCTCTAGTGAGAACATTGAGAAACACTAGAATCACCATCCAATAACCAGAAACTAGAATAGAGAGAGACTGAACTTCTTGCCAAAATTGAGGACTTTCTAGAGCATGTGAGGGGCCATAAATTTTGTTTCTGAATTCTAGCAATAAAAATTCAAAGAAAACTCTGTTCTCTCAGTCCCAAAACTAAAATGCAGATTATTTATCTGATGGATGCTCATTTTGAACAGTATAAAGTAAATTTGCACGTCTTCAAATTTTGAATACAAACTTGTACTTCTTACATTGTGCAAAATTTATGTGAAAGTTTGTTTAGATTGAAGTTAAAGGCAATACTGCAGAACCCAATATGTCACGTCTATTTAATTATGAATCAAGTAGAAAAATGGCATCTACTCGAACACTGGAAAAAAAAGAACGAGGCTATCATTCTGGCACTGATCGTTTTCATGATGAATTAGTGAGTGTAATGGTTAACATTGAGAATAGGCTGAATGGGATAAAGGCTTCTTTTGTCATAATGGTTCTAGAAACAAAAAGTTCTTCCTTATTTCAGCACAATTATTCATTGGTTTTGTATAAACCTTTTGTTCTTGGATAAACTGCTCAAATACTTCGCAATTCAATTGCTCATTGTTGTTTTGCTGTTTTGCAGATATTGAAGTTACAGCAGAGGATTCAATCTCAGCAGGCTGGAAAAGCTAAAGTGTAACATGTTTTATTGTTGTTTTTCAGCTGTACTTCCTTAACTTCTGTTTTTCTTTTTGCTATCTCTCTTGTACCGTTAAAGTTACACTGCACACTCAAAAGCTTGACAATATTTAATTAGTTCGATTTTGATTATAGATACATGCACTTCCTATGTTGAACAT

mRNA sequence

ATGAGTTCCACAAGTGCTGTTCGAGAGCTACAGCGCGAGCTGGAGTCGAAAGCCAACGATCTCAGCAAGCTACAGAAAGGCAAGTCTCTAATCGATTCTCATATTGCGAAGAACCACCAAATTAGGAAGAAGTACACTATTCAGCTGGGTGAGAACGAGCTCGTCCTTAAGGAATTGGATCTACTTAAAGATGACGCAAATGTATATAAACTGATTGGTCCAGTTCTCGTGAAGCAAGATTTGGCAGAAGCAAATGCCAATGTTCGCAAGAGAATTGATTACATTTCTGCAGAATTGAAACGTCTTGATTCAGCCCTTCAAGATTTGGAAGAGAAGCAAAATAGCAAGAGAGATGCGATATTGAAGTTACAGCAGAGGATTCAATCTCAGCAGGCTGGAAAAGCTAAAGTGTAACATGTTTTATTGTTGTTTTTCAGCTGTACTTCCTTAACTTCTGTTTTTCTTTTTGCTATCTCTCTTGTACCGTTAAAGTTACACTGCACACTCAAAAGCTTGACAATATTTAATTAGTTCGATTTTGATTATAGATACATGCACTTCCTATGTTGAACAT

Coding sequence (CDS)

ATGAGTTCCACAAGTGCTGTTCGAGAGCTACAGCGCGAGCTGGAGTCGAAAGCCAACGATCTCAGCAAGCTACAGAAAGGCAAGTCTCTAATCGATTCTCATATTGCGAAGAACCACCAAATTAGGAAGAAGTACACTATTCAGCTGGGTGAGAACGAGCTCGTCCTTAAGGAATTGGATCTACTTAAAGATGACGCAAATGTATATAAACTGATTGGTCCAGTTCTCGTGAAGCAAGATTTGGCAGAAGCAAATGCCAATGTTCGCAAGAGAATTGATTACATTTCTGCAGAATTGAAACGTCTTGATTCAGCCCTTCAAGATTTGGAAGAGAAGCAAAATAGCAAGAGAGATGCGATATTGAAGTTACAGCAGAGGATTCAATCTCAGCAGGCTGGAAAAGCTAAAGTGTAA

Homology

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BLAST of CmoCh13G005880 vs. Swiss-Prot
Match: PFD6_BOVIN (Prefoldin subunit 6 OS=Bos taurus GN=PFDN6 PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 6.9e-18
Identity = 55/126 (43.65%), Postives = 81/126 (64.29%), Query Frame = 1


Query: 10  LQRELESKANDLSKLQKGKSLIDSHIAKNHQIRKKYTIQLGENELVLKELDLLKDDANVY 69
           +Q++L+ +     +LQK        ++K+   R+K   QL EN +V +EL LL     V+
Sbjct: 5   IQKKLQGEVEKYQQLQKD-------LSKSMSGRQKLEAQLTENNIVKEELALLDGSNVVF 64

Query: 70  KLIGPVLVKQDLAEANANVRKRIDYISAELKRLDSALQDLEEKQNSKRDAILKLQQRIQS 129
           KL+GPVLVKQ+L EA A V KR+DYI+AE+KR +S L+DLE++   +R+ + +LQQ  Q 
Sbjct: 65  KLLGPVLVKQELGEARATVGKRLDYITAEIKRYESQLRDLEQQSEQQRETLAQLQQEFQR 123

Query: 130 QQAGKA 136
            QA KA
Sbjct: 125 AQAAKA 123

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BLAST of CmoCh13G005880 vs. Swiss-Prot
Match: PFD6_CANLF (Prefoldin subunit 6 OS=Canis lupus familiaris GN=PFDN6 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.2e-17
Identity = 55/126 (43.65%), Postives = 80/126 (63.49%), Query Frame = 1


Query: 10  LQRELESKANDLSKLQKGKSLIDSHIAKNHQIRKKYTIQLGENELVLKELDLLKDDANVY 69
           +Q++L+ +     +LQK        ++K+   R+K   QL EN +V +EL LL     V+
Sbjct: 5   IQKKLQGEVEKYQQLQKD-------LSKSMSGRQKLEAQLTENNIVKEELALLDGSNVVF 64

Query: 70  KLIGPVLVKQDLAEANANVRKRIDYISAELKRLDSALQDLEEKQNSKRDAILKLQQRIQS 129
           KL+GPVLVKQ+L EA A V KR+DYI+AE+KR +S L+DLE +   +R+ + +LQQ  Q 
Sbjct: 65  KLLGPVLVKQELGEARATVGKRLDYITAEIKRYESQLRDLERQSEQQRETLAQLQQEFQR 123

Query: 130 QQAGKA 136
            QA KA
Sbjct: 125 AQAAKA 123

[Close]

BLAST of CmoCh13G005880 vs. Swiss-Prot
Match: PFD6_MOUSE (Prefoldin subunit 6 OS=Mus musculus GN=Pfdn6 PE=1 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.2e-17
Identity = 55/126 (43.65%), Postives = 80/126 (63.49%), Query Frame = 1


Query: 10  LQRELESKANDLSKLQKGKSLIDSHIAKNHQIRKKYTIQLGENELVLKELDLLKDDANVY 69
           +Q++L+ +     +LQK        ++K+   R+K   QL EN +V +EL LL     V+
Sbjct: 5   IQKKLQGEVEKYQQLQKD-------LSKSMSGRQKLEAQLTENNIVKEELALLDGSNVVF 64

Query: 70  KLIGPVLVKQDLAEANANVRKRIDYISAELKRLDSALQDLEEKQNSKRDAILKLQQRIQS 129
           KL+GPVLVKQ+L EA A V KR+DYI+AE+KR +S L+DLE +   +R+ + +LQQ  Q 
Sbjct: 65  KLLGPVLVKQELGEARATVGKRLDYITAEIKRYESQLRDLERQSEQQRETLAQLQQEFQR 123

Query: 130 QQAGKA 136
            QA KA
Sbjct: 125 AQAAKA 123

[Close]

BLAST of CmoCh13G005880 vs. Swiss-Prot
Match: PFD6_HUMAN (Prefoldin subunit 6 OS=Homo sapiens GN=PFDN6 PE=1 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.2e-17
Identity = 55/126 (43.65%), Postives = 80/126 (63.49%), Query Frame = 1


Query: 10  LQRELESKANDLSKLQKGKSLIDSHIAKNHQIRKKYTIQLGENELVLKELDLLKDDANVY 69
           +Q++L+ +     +LQK        ++K+   R+K   QL EN +V +EL LL     V+
Sbjct: 5   IQKKLQGEVEKYQQLQKD-------LSKSMSGRQKLEAQLTENNIVKEELALLDGSNVVF 64

Query: 70  KLIGPVLVKQDLAEANANVRKRIDYISAELKRLDSALQDLEEKQNSKRDAILKLQQRIQS 129
           KL+GPVLVKQ+L EA A V KR+DYI+AE+KR +S L+DLE +   +R+ + +LQQ  Q 
Sbjct: 65  KLLGPVLVKQELGEARATVGKRLDYITAEIKRYESQLRDLERQSEQQRETLAQLQQEFQR 123

Query: 130 QQAGKA 136
            QA KA
Sbjct: 125 AQAAKA 123

[Close]

BLAST of CmoCh13G005880 vs. Swiss-Prot
Match: PFD6_DROME (Probable prefoldin subunit 6 OS=Drosophila melanogaster GN=CG7770 PE=2 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.3e-13
Identity = 52/129 (40.31%), Postives = 76/129 (58.91%), Query Frame = 1


Query: 3   STSAVRELQRELESKAN---DLSKLQKGKSLIDSHIAKNHQIRKKYTIQLGENELVLKEL 62
           S +  +++Q E+ES  N      K+ K +++++S              QL EN+ VL EL
Sbjct: 5   SAALYKKMQAEIESYQNLQKSCLKMVKQRAVLES--------------QLNENKCVLDEL 64

Query: 63  DLLKDDANVYKLIGPVLVKQDLAEANANVRKRIDYISAELKRLDSALQDLEEKQNSKRDA 122
           +LL  D  VYKL GPVLVKQ+L E+  NV KRI+YIS ELK    AL+++E+     R++
Sbjct: 65  NLLGPDNKVYKLFGPVLVKQELEESRQNVGKRIEYISKELKSSTDALENMEKDMLKHRES 119

Query: 123 ILKLQQRIQ 129
           + K QQ+ Q
Sbjct: 125 VAKYQQQCQ 119

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BLAST of CmoCh13G005880 vs. TrEMBL
Match: A0A059C611_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E02397 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 4.8e-50
Identity = 115/136 (84.56%), Postives = 124/136 (91.18%), Query Frame = 1


Query: 1   MSSTSAVRELQRELESKANDLSKLQKGKSLIDSHIAKNHQIRKKYTIQLGENELVLKELD 60
           MS++SA+R+LQR+LE+KANDLSKLQK        IAKNHQ+RKKYTIQLGENELVLKELD
Sbjct: 1   MSTSSALRDLQRDLENKANDLSKLQKD-------IAKNHQVRKKYTIQLGENELVLKELD 60

Query: 61  LLKDDANVYKLIGPVLVKQDLAEANANVRKRIDYISAELKRLDSALQDLEEKQNSKRDAI 120
           LL +DANVYKLIGPVLVKQDLAEANANVRKRIDYISAELKRLD+ LQDLEEKQNSKRD I
Sbjct: 61  LLNEDANVYKLIGPVLVKQDLAEANANVRKRIDYISAELKRLDATLQDLEEKQNSKRDMI 120

Query: 121 LKLQQRIQSQQAGKAK 137
           LKLQQRIQS QAGKAK
Sbjct: 121 LKLQQRIQSLQAGKAK 129

[Close]

BLAST of CmoCh13G005880 vs. TrEMBL
Match: A0A0D2UM46_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G043400 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 1.5e-48
Identity = 112/135 (82.96%), Postives = 125/135 (92.59%), Query Frame = 1


Query: 2   SSTSAVRELQRELESKANDLSKLQKGKSLIDSHIAKNHQIRKKYTIQLGENELVLKELDL 61
           SS++A+R+LQ +LE+KANDLSKLQK        IAKNHQ+RKKYTIQLGENELVLKELDL
Sbjct: 3   SSSTALRDLQSDLENKANDLSKLQKD-------IAKNHQVRKKYTIQLGENELVLKELDL 62

Query: 62  LKDDANVYKLIGPVLVKQDLAEANANVRKRIDYISAELKRLDSALQDLEEKQNSKRDAIL 121
           LK+DANVYKLIGPVLVKQDLAEANANVRKRI+YISAELKRLDS+LQDLEEKQ+SKR+AIL
Sbjct: 63  LKEDANVYKLIGPVLVKQDLAEANANVRKRIEYISAELKRLDSSLQDLEEKQHSKREAIL 122

Query: 122 KLQQRIQSQQAGKAK 137
           K+QQRIQS QAGKAK
Sbjct: 123 KVQQRIQSLQAGKAK 130

[Close]

BLAST of CmoCh13G005880 vs. TrEMBL
Match: A0A0D2QGV1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G155300 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 2.6e-48
Identity = 111/135 (82.22%), Postives = 124/135 (91.85%), Query Frame = 1


Query: 2   SSTSAVRELQRELESKANDLSKLQKGKSLIDSHIAKNHQIRKKYTIQLGENELVLKELDL 61
           SS++A+RELQ++LE+KANDLSKLQK        IAKNHQ+RKKYTIQLGENELVLKELDL
Sbjct: 3   SSSTALRELQQDLENKANDLSKLQKD-------IAKNHQVRKKYTIQLGENELVLKELDL 62

Query: 62  LKDDANVYKLIGPVLVKQDLAEANANVRKRIDYISAELKRLDSALQDLEEKQNSKRDAIL 121
           L +DANVYKLIGPVLVKQDLAEANANVRKRI+YISAELKRLD +LQDLEEKQ+SKR+AIL
Sbjct: 63  LNEDANVYKLIGPVLVKQDLAEANANVRKRIEYISAELKRLDGSLQDLEEKQHSKREAIL 122

Query: 122 KLQQRIQSQQAGKAK 137
           K+QQRIQS QAGKAK
Sbjct: 123 KVQQRIQSHQAGKAK 130

[Close]

BLAST of CmoCh13G005880 vs. TrEMBL
Match: I1LNU5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_12G006600 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 3.4e-48
Identity = 111/134 (82.84%), Postives = 121/134 (90.30%), Query Frame = 1


Query: 3   STSAVRELQRELESKANDLSKLQKGKSLIDSHIAKNHQIRKKYTIQLGENELVLKELDLL 62
           S+S +R+LQRELE+KANDLSKLQK        IAKNHQ+RKKYT+QLGENELVLKELDLL
Sbjct: 2   SSSNLRDLQRELENKANDLSKLQK-------EIAKNHQMRKKYTLQLGENELVLKELDLL 61

Query: 63  KDDANVYKLIGPVLVKQDLAEANANVRKRIDYISAELKRLDSALQDLEEKQNSKRDAILK 122
           KDD NVYKLIGPVLVKQDLAEANANVRKRI+YISAELKRLD+ +QDLEEKQNSK+DAILK
Sbjct: 62  KDDTNVYKLIGPVLVKQDLAEANANVRKRIEYISAELKRLDATVQDLEEKQNSKKDAILK 121

Query: 123 LQQRIQSQQAGKAK 137
           LQQRIQS QAGK K
Sbjct: 122 LQQRIQSLQAGKGK 128

[Close]

BLAST of CmoCh13G005880 vs. TrEMBL
Match: K7LSA3_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_12G006600 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 3.4e-48
Identity = 111/134 (82.84%), Postives = 121/134 (90.30%), Query Frame = 1


Query: 3   STSAVRELQRELESKANDLSKLQKGKSLIDSHIAKNHQIRKKYTIQLGENELVLKELDLL 62
           S+S +R+LQRELE+KANDLSKLQK        IAKNHQ+RKKYT+QLGENELVLKELDLL
Sbjct: 48  SSSNLRDLQRELENKANDLSKLQK-------EIAKNHQMRKKYTLQLGENELVLKELDLL 107

Query: 63  KDDANVYKLIGPVLVKQDLAEANANVRKRIDYISAELKRLDSALQDLEEKQNSKRDAILK 122
           KDD NVYKLIGPVLVKQDLAEANANVRKRI+YISAELKRLD+ +QDLEEKQNSK+DAILK
Sbjct: 108 KDDTNVYKLIGPVLVKQDLAEANANVRKRIEYISAELKRLDATVQDLEEKQNSKKDAILK 167

Query: 123 LQQRIQSQQAGKAK 137
           LQQRIQS QAGK K
Sbjct: 168 LQQRIQSLQAGKGK 174

[Close]

BLAST of CmoCh13G005880 vs. TAIR10
Match: AT1G29990.1 (AT1G29990.1 prefoldin 6)

HSP 1 Score: 191.0 bits (484), Expect = 4.7e-49
Identity = 104/134 (77.61%), Postives = 120/134 (89.55%), Query Frame = 1


Query: 3   STSAVRELQRELESKANDLSKLQKGKSLIDSHIAKNHQIRKKYTIQLGENELVLKELDLL 62
           S+S VR+LQR+LE+KANDL K+QK        I KNHQ+RKKYTIQLGENELVLKELDLL
Sbjct: 2   SSSTVRDLQRDLENKANDLGKIQKD-------IGKNHQLRKKYTIQLGENELVLKELDLL 61

Query: 63  KDDANVYKLIGPVLVKQDLAEANANVRKRIDYISAELKRLDSALQDLEEKQNSKRDAILK 122
           ++DANVYKLIGPVLVKQDLAEANANVRKRI+YISAELKRLD+ LQD+EEKQN+KR+ I+K
Sbjct: 62  EEDANVYKLIGPVLVKQDLAEANANVRKRIEYISAELKRLDAILQDMEEKQNNKRETIMK 121

Query: 123 LQQRIQSQQAGKAK 137
           LQQR+Q+ QAGKAK
Sbjct: 122 LQQRLQTIQAGKAK 128

[Close]

BLAST of CmoCh13G005880 vs. NCBI nr
Match: gi|659068358|ref|XP_008444032.1| (PREDICTED: prefoldin subunit 6 [Cucumis melo])

HSP 1 Score: 211.5 bits (537), Expect = 9.5e-52
Identity = 119/136 (87.50%), Postives = 125/136 (91.91%), Query Frame = 1


Query: 1   MSSTSAVRELQRELESKANDLSKLQKGKSLIDSHIAKNHQIRKKYTIQLGENELVLKELD 60
           MSSTSA+RELQRELE+KANDLSKLQK        IAKNHQ+RKKYT+QLGENELVLKELD
Sbjct: 1   MSSTSALRELQRELEAKANDLSKLQKD-------IAKNHQVRKKYTVQLGENELVLKELD 60

Query: 61  LLKDDANVYKLIGPVLVKQDLAEANANVRKRIDYISAELKRLDSALQDLEEKQNSKRDAI 120
           LL+DD NVYKLIGPVLVKQDLAEANANVRKRI+YISAELKRLDSALQDLEEKQNS RDAI
Sbjct: 61  LLQDDTNVYKLIGPVLVKQDLAEANANVRKRIEYISAELKRLDSALQDLEEKQNSNRDAI 120

Query: 121 LKLQQRIQSQQAGKAK 137
           LKLQQRIQS QAGKAK
Sbjct: 121 LKLQQRIQSLQAGKAK 129

[Close]

BLAST of CmoCh13G005880 vs. NCBI nr
Match: gi|702344701|ref|XP_010056888.1| (PREDICTED: prefoldin subunit 6 [Eucalyptus grandis])

HSP 1 Score: 205.3 bits (521), Expect = 6.8e-50
Identity = 115/136 (84.56%), Postives = 124/136 (91.18%), Query Frame = 1


Query: 1   MSSTSAVRELQRELESKANDLSKLQKGKSLIDSHIAKNHQIRKKYTIQLGENELVLKELD 60
           MS++SA+R+LQR+LE+KANDLSKLQK        IAKNHQ+RKKYTIQLGENELVLKELD
Sbjct: 1   MSTSSALRDLQRDLENKANDLSKLQKD-------IAKNHQVRKKYTIQLGENELVLKELD 60

Query: 61  LLKDDANVYKLIGPVLVKQDLAEANANVRKRIDYISAELKRLDSALQDLEEKQNSKRDAI 120
           LL +DANVYKLIGPVLVKQDLAEANANVRKRIDYISAELKRLD+ LQDLEEKQNSKRD I
Sbjct: 61  LLNEDANVYKLIGPVLVKQDLAEANANVRKRIDYISAELKRLDATLQDLEEKQNSKRDMI 120

Query: 121 LKLQQRIQSQQAGKAK 137
           LKLQQRIQS QAGKAK
Sbjct: 121 LKLQQRIQSLQAGKAK 129

[Close]

BLAST of CmoCh13G005880 vs. NCBI nr
Match: gi|802596172|ref|XP_012072099.1| (PREDICTED: prefoldin subunit 6 [Jatropha curcas])

HSP 1 Score: 204.5 bits (519), Expect = 1.2e-49
Identity = 113/136 (83.09%), Postives = 125/136 (91.91%), Query Frame = 1


Query: 1   MSSTSAVRELQRELESKANDLSKLQKGKSLIDSHIAKNHQIRKKYTIQLGENELVLKELD 60
           M+S++A+RELQR+LE+KANDLSK QK        IAKNHQ+RKKYT+QLGENELVLKELD
Sbjct: 1   MASSTAIRELQRDLENKANDLSKHQKD-------IAKNHQVRKKYTVQLGENELVLKELD 60

Query: 61  LLKDDANVYKLIGPVLVKQDLAEANANVRKRIDYISAELKRLDSALQDLEEKQNSKRDAI 120
           LLK+DANVYKLIGPVLVKQDLAEANANVRKRIDYISAELKRLD+ LQDLEEKQNSK+DAI
Sbjct: 61  LLKEDANVYKLIGPVLVKQDLAEANANVRKRIDYISAELKRLDATLQDLEEKQNSKKDAI 120

Query: 121 LKLQQRIQSQQAGKAK 137
           LKLQQRIQ+ QAGKAK
Sbjct: 121 LKLQQRIQTLQAGKAK 129

[Close]

BLAST of CmoCh13G005880 vs. NCBI nr
Match: gi|449459354|ref|XP_004147411.1| (PREDICTED: prefoldin subunit 6 [Cucumis sativus])

HSP 1 Score: 204.1 bits (518), Expect = 1.5e-49
Identity = 114/136 (83.82%), Postives = 123/136 (90.44%), Query Frame = 1


Query: 1   MSSTSAVRELQRELESKANDLSKLQKGKSLIDSHIAKNHQIRKKYTIQLGENELVLKELD 60
           MSS++A+RE+QRELE+KANDLSKLQK        IAKNHQ+RKKYTIQLGENELVLKELD
Sbjct: 1   MSSSTALREVQRELEAKANDLSKLQKD-------IAKNHQVRKKYTIQLGENELVLKELD 60

Query: 61  LLKDDANVYKLIGPVLVKQDLAEANANVRKRIDYISAELKRLDSALQDLEEKQNSKRDAI 120
           LL+DD NVYKLIGPVLVKQDLAEANANVRKRI+YISAELKRLDS LQDLEEKQN KRD +
Sbjct: 61  LLQDDTNVYKLIGPVLVKQDLAEANANVRKRIEYISAELKRLDSILQDLEEKQNRKRDVV 120

Query: 121 LKLQQRIQSQQAGKAK 137
           LKLQQRIQS QAGKAK
Sbjct: 121 LKLQQRIQSLQAGKAK 129

[Close]

BLAST of CmoCh13G005880 vs. NCBI nr
Match: gi|1000965338|ref|XP_015574949.1| (PREDICTED: prefoldin subunit 6 [Ricinus communis])

HSP 1 Score: 203.0 bits (515), Expect = 3.4e-49
Identity = 112/131 (85.50%), Postives = 120/131 (91.60%), Query Frame = 1


Query: 6   AVRELQRELESKANDLSKLQKGKSLIDSHIAKNHQIRKKYTIQLGENELVLKELDLLKDD 65
           A+RELQR+LE+KANDLSKLQK        IAKNHQ+RKKYT+QLGENELVLKELDLLK+D
Sbjct: 4   AIRELQRDLENKANDLSKLQKD-------IAKNHQVRKKYTVQLGENELVLKELDLLKED 63

Query: 66  ANVYKLIGPVLVKQDLAEANANVRKRIDYISAELKRLDSALQDLEEKQNSKRDAILKLQQ 125
           ANVYKLIGPVLVKQDLAEANANVRKRIDYISAELKRLD+ LQDLEEKQNSK+DAI KLQQ
Sbjct: 64  ANVYKLIGPVLVKQDLAEANANVRKRIDYISAELKRLDATLQDLEEKQNSKKDAIFKLQQ 123

Query: 126 RIQSQQAGKAK 137
           RIQS QAGKAK
Sbjct: 124 RIQSLQAGKAK 127

The following BLAST results are available for this feature:

BLAST of CmoCh13G005880 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PFD6_BOVIN	6.9e-18	43.65	Prefoldin subunit 6 OS=Bos taurus GN=PFDN6 PE=2 SV=1	[more]
PFD6_CANLF	1.2e-17	43.65	Prefoldin subunit 6 OS=Canis lupus familiaris GN=PFDN6 PE=3 SV=1	[more]
PFD6_MOUSE	1.2e-17	43.65	Prefoldin subunit 6 OS=Mus musculus GN=Pfdn6 PE=1 SV=1	[more]
PFD6_HUMAN	1.2e-17	43.65	Prefoldin subunit 6 OS=Homo sapiens GN=PFDN6 PE=1 SV=1	[more]
PFD6_DROME	1.3e-13	40.31	Probable prefoldin subunit 6 OS=Drosophila melanogaster GN=CG7770 PE=2 SV=1	[more]

BLAST of CmoCh13G005880 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A059C611_EUCGR	4.8e-50	84.56	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E02397 PE=4 SV=1	[more]
A0A0D2UM46_GOSRA	1.5e-48	82.96	Uncharacterized protein OS=Gossypium raimondii GN=B456_011G043400 PE=4 SV=1	[more]
A0A0D2QGV1_GOSRA	2.6e-48	82.22	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G155300 PE=4 SV=1	[more]
I1LNU5_SOYBN	3.4e-48	82.84	Uncharacterized protein OS=Glycine max GN=GLYMA_12G006600 PE=4 SV=1	[more]
K7LSA3_SOYBN	3.4e-48	82.84	Uncharacterized protein OS=Glycine max GN=GLYMA_12G006600 PE=4 SV=1	[more]

BLAST of CmoCh13G005880 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G29990.1	4.7e-49	77.61	prefoldin 6	[more]

BLAST of CmoCh13G005880 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659068358\|ref\|XP_008444032.1\|	9.5e-52	87.50	PREDICTED: prefoldin subunit 6 [Cucumis melo]	[more]
gi\|702344701\|ref\|XP_010056888.1\|	6.8e-50	84.56	PREDICTED: prefoldin subunit 6 [Eucalyptus grandis]	[more]
gi\|802596172\|ref\|XP_012072099.1\|	1.2e-49	83.09	PREDICTED: prefoldin subunit 6 [Jatropha curcas]	[more]
gi\|449459354\|ref\|XP_004147411.1\|	1.5e-49	83.82	PREDICTED: prefoldin subunit 6 [Cucumis sativus]	[more]
gi\|1000965338\|ref\|XP_015574949.1\|	3.4e-49	85.50	PREDICTED: prefoldin subunit 6 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002777	PFD_beta-like
IPR009053	Prefoldin

Vocabulary: **Biological Process**
Term	Definition
GO:0006457	protein folding

Vocabulary: **Cellular Component**
Term	Definition
GO:0016272	prefoldin complex

Vocabulary: **Molecular Function**
Term	Definition
GO:0051082	unfolded protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043622	cortical microtubule organization
biological_process	GO:0006094	gluconeogenesis
biological_process	GO:0006096	glycolytic process
biological_process	GO:0006457	protein folding
biological_process	GO:0046686	response to cadmium ion
biological_process	GO:0009651	response to salt stress
cellular_component	GO:0005829	cytosol
cellular_component	GO:0016272	prefoldin complex
molecular_function	GO:0051082	unfolded protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G005880.1	CmoCh13G005880.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002777	Prefoldin beta-like	PFAM	PF01920	Prefoldin_2	coord: 35..125 score: 8.4
IPR009053	Prefoldin	GENE3D	G3DSA:1.10.287.370		coord: 9..129 score: 2.6
IPR009053	Prefoldin	unknown	SSF46579	Prefoldin	coord: 31..125 score: 3.01
None	No IPR available	unknown	Coil	Coil	coord: 7..27 score: -coord: 92..126 scor
None	No IPR available	PANTHER	PTHR21431	PREFOLDIN SUBUNIT 6	coord: 1..135 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh13G005880	gCucsa.212390.2	Cucumber (Gy14) v1	cgycmoB0614
CmoCh13G005880	CmaCh13G005560	Cucurbita maxima (Rimu)	cmacmoB218
CmoCh13G005880	CmaCh18G004620	Cucurbita maxima (Rimu)	cmacmoB398
CmoCh13G005880	Cla019606	Watermelon (97103) v1	cmowmB174
CmoCh13G005880	Csa1G448940	Cucumber (Chinese Long) v2	cmocuB190
CmoCh13G005880	MELO3C002717	Melon (DHL92) v3.5.1	cmomeB179
CmoCh13G005880	ClCG03G007080	Watermelon (Charleston Gray)	cmowcgB185
CmoCh13G005880	CSPI01G21400	Wild cucumber (PI 183967)	cmocpiB194
CmoCh13G005880	Lsi02G008680	Bottle gourd (USVL1VR-Ls)	cmolsiB197
CmoCh13G005880	Cp4.1LG09g07810	Cucurbita pepo (Zucchini)	cmocpeB182
CmoCh13G005880	Cp4.1LG20g05010	Cucurbita pepo (Zucchini)	cmocpeB201
CmoCh13G005880	MELO3C002717.2	Melon (DHL92) v3.6.1	cmomedB201
CmoCh13G005880	CsaV3_1G032650	Cucumber (Chinese Long) v3	cmocucB0223
CmoCh13G005880	Cla97C03G058310	Watermelon (97103) v2	cmowmbB210
CmoCh13G005880	Bhi08G001720	Wax gourd	cmowgoB0244
CmoCh13G005880	CsGy1G021110	Cucumber (Gy14) v2	cgybcmoB059
CmoCh13G005880	Carg19924	Silver-seed gourd	carcmoB1080
CmoCh13G005880	Carg14543	Silver-seed gourd	carcmoB0202

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh13G005880	CmoCh18G004390	Cucurbita moschata (Rifu)	cmocmoB170

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh13G005880	Silver-seed gourd	carcmoB0739
CmoCh13G005880	Silver-seed gourd	carcmoB1279
CmoCh13G005880	Cucumber (Chinese Long) v3	cmocucB0254
CmoCh13G005880	Watermelon (97103) v2	cmowmbB196
CmoCh13G005880	Wax gourd	cmowgoB0241
CmoCh13G005880	Cucurbita moschata (Rifu)	cmocmoB183
CmoCh13G005880	Cucurbita moschata (Rifu)	cmocmoB190
CmoCh13G005880	Cucumber (Gy14) v1	cgycmoB0033
CmoCh13G005880	Cucurbita maxima (Rimu)	cmacmoB638
CmoCh13G005880	Cucurbita maxima (Rimu)	cmacmoB847
CmoCh13G005880	Wild cucumber (PI 183967)	cmocpiB218
CmoCh13G005880	Cucumber (Chinese Long) v2	cmocuB215
CmoCh13G005880	Melon (DHL92) v3.5.1	cmomeB195
CmoCh13G005880	Watermelon (Charleston Gray)	cmowcgB176
CmoCh13G005880	Watermelon (97103) v1	cmowmB188
CmoCh13G005880	Cucurbita pepo (Zucchini)	cmocpeB186
CmoCh13G005880	Cucurbita pepo (Zucchini)	cmocpeB199
CmoCh13G005880	Bottle gourd (USVL1VR-Ls)	cmolsiB189
CmoCh13G005880	Cucumber (Gy14) v2	cgybcmoB708
CmoCh13G005880	Melon (DHL92) v3.6.1	cmomedB217