Csa1G448940 (gene) Cucumber (Chinese Long) v2

NameCsa1G448940
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionPrefoldin subunit; contains IPR009053 (Prefoldin)
LocationChr1 : 16429193 .. 16429795 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTTATCAGATATTGCGAAGAATCACCAAGTGAGGAAGAAGTACACTATTCAGCTGGGTGAGAACGAGCTCGTTCTTAAGGTTTCCCCACCCTTCTCACTTGTTTCCTCGTAGATTGAAGTATTTGCTTGTGTACAGTTCAGTAGCGAGGAGGGGAAGTAGGCTAAGAGACTTTTTCTGACTCGTGTATTTCTGTCCACACAGAAGTTGTAAAAAATAGAATTTCATTTTTTCGTTTCAATTTATACGTTCGTGCGTTTCAAGGGGATTTTTCTTCACTTGATTCGATATGTGGTTTAGATAATGGAAATTTCTTTACATTTATATAATCTGGCATACGATAAGAATTGAAGCATTCTTATCAGTGGACATTTTTCTCGTTTATTGCTACTACGTGTGAGCTTGTTTCTTGATCTGCTTCTTTACTTACCTATGCAGGAATTGGATTTACTTCAAGACGACACAAATGTATATAAACTGATTGGTCCAGTGCTCGTGAAGCAAGATTTGGCAGAAGCAAATGCGAATGTGCGCAAGAGAATTGAATACATCTCCGCAGAATTGTGTGTTTCTTCATCTGTTTTCCATATAGTTTTTTAG

mRNA sequence

ATGGATTTATCAGATATTGCGAAGAATCACCAAGTGAGGAAGAAGTACACTATTCAGCTGGGTGAGAACGAGCTCGTTCTTAAGGAATTGGATTTACTTCAAGACGACACAAATGTATATAAACTGATTGGTCCAGTGCTCGTGAAGCAAGATTTGGCAGAAGCAAATGCGAATGTGCGCAAGAGAATTGAATACATCTCCGCAGAATTGTGTGTTTCTTCATCTGTTTTCCATATAGTTTTTTAG

Coding sequence (CDS)

ATGGATTTATCAGATATTGCGAAGAATCACCAAGTGAGGAAGAAGTACACTATTCAGCTGGGTGAGAACGAGCTCGTTCTTAAGGAATTGGATTTACTTCAAGACGACACAAATGTATATAAACTGATTGGTCCAGTGCTCGTGAAGCAAGATTTGGCAGAAGCAAATGCGAATGTGCGCAAGAGAATTGAATACATCTCCGCAGAATTGTGTGTTTCTTCATCTGTTTTCCATATAGTTTTTTAG

Protein sequence

MDLSDIAKNHQVRKKYTIQLGENELVLKELDLLQDDTNVYKLIGPVLVKQDLAEANANVRKRIEYISAELCVSSSVFHIVF*
BLAST of Csa1G448940 vs. Swiss-Prot
Match: PFD6_DROME (Probable prefoldin subunit 6 OS=Drosophila melanogaster GN=CG7770 PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 8.3e-11
Identity = 35/52 (67.31%), Postives = 37/52 (71.15%), Query Frame = 1

Query: 19 QLGENELVLKELDLLQDDTNVYKLIGPVLVKQDLAEANANVRKRIEYISAEL 71
          QL EN+ VL EL+LL  D  VYKL GPVLVKQ+L E+  NV KRIEYIS EL
Sbjct: 39 QLNENKCVLDELNLLGPDNKVYKLFGPVLVKQELEESRQNVGKRIEYISKEL 90

BLAST of Csa1G448940 vs. Swiss-Prot
Match: PFD6_HUMAN (Prefoldin subunit 6 OS=Homo sapiens GN=PFDN6 PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 8.3e-11
Identity = 34/66 (51.52%), Postives = 45/66 (68.18%), Query Frame = 1

Query: 5  DIAKNHQVRKKYTIQLGENELVLKELDLLQDDTNVYKLIGPVLVKQDLAEANANVRKRIE 64
          D++K+   R+K   QL EN +V +EL LL     V+KL+GPVLVKQ+L EA A V KR++
Sbjct: 22 DLSKSMSGRQKLEAQLTENNIVKEELALLDGSNVVFKLLGPVLVKQELGEARATVGKRLD 81

Query: 65 YISAEL 71
          YI+AE+
Sbjct: 82 YITAEI 87

BLAST of Csa1G448940 vs. Swiss-Prot
Match: PFD6_MOUSE (Prefoldin subunit 6 OS=Mus musculus GN=Pfdn6 PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 8.3e-11
Identity = 34/66 (51.52%), Postives = 45/66 (68.18%), Query Frame = 1

Query: 5  DIAKNHQVRKKYTIQLGENELVLKELDLLQDDTNVYKLIGPVLVKQDLAEANANVRKRIE 64
          D++K+   R+K   QL EN +V +EL LL     V+KL+GPVLVKQ+L EA A V KR++
Sbjct: 22 DLSKSMSGRQKLEAQLTENNIVKEELALLDGSNVVFKLLGPVLVKQELGEARATVGKRLD 81

Query: 65 YISAEL 71
          YI+AE+
Sbjct: 82 YITAEI 87

BLAST of Csa1G448940 vs. Swiss-Prot
Match: PFD6_BOVIN (Prefoldin subunit 6 OS=Bos taurus GN=PFDN6 PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 8.3e-11
Identity = 34/66 (51.52%), Postives = 45/66 (68.18%), Query Frame = 1

Query: 5  DIAKNHQVRKKYTIQLGENELVLKELDLLQDDTNVYKLIGPVLVKQDLAEANANVRKRIE 64
          D++K+   R+K   QL EN +V +EL LL     V+KL+GPVLVKQ+L EA A V KR++
Sbjct: 22 DLSKSMSGRQKLEAQLTENNIVKEELALLDGSNVVFKLLGPVLVKQELGEARATVGKRLD 81

Query: 65 YISAEL 71
          YI+AE+
Sbjct: 82 YITAEI 87

BLAST of Csa1G448940 vs. Swiss-Prot
Match: PFD6_CANLF (Prefoldin subunit 6 OS=Canis lupus familiaris GN=PFDN6 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 8.3e-11
Identity = 34/66 (51.52%), Postives = 45/66 (68.18%), Query Frame = 1

Query: 5  DIAKNHQVRKKYTIQLGENELVLKELDLLQDDTNVYKLIGPVLVKQDLAEANANVRKRIE 64
          D++K+   R+K   QL EN +V +EL LL     V+KL+GPVLVKQ+L EA A V KR++
Sbjct: 22 DLSKSMSGRQKLEAQLTENNIVKEELALLDGSNVVFKLLGPVLVKQELGEARATVGKRLD 81

Query: 65 YISAEL 71
          YI+AE+
Sbjct: 82 YITAEI 87

BLAST of Csa1G448940 vs. TrEMBL
Match: A0A0A0LUZ0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G448940 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 1.8e-36
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1

Query: 1  MDLSDIAKNHQVRKKYTIQLGENELVLKELDLLQDDTNVYKLIGPVLVKQDLAEANANVR 60
          MDLSDIAKNHQVRKKYTIQLGENELVLKELDLLQDDTNVYKLIGPVLVKQDLAEANANVR
Sbjct: 1  MDLSDIAKNHQVRKKYTIQLGENELVLKELDLLQDDTNVYKLIGPVLVKQDLAEANANVR 60

Query: 61 KRIEYISAELCVSSSVFHIVF 82
          KRIEYISAELCVSSSVFHIVF
Sbjct: 61 KRIEYISAELCVSSSVFHIVF 81

BLAST of Csa1G448940 vs. TrEMBL
Match: W9SEQ9_9ROSA (Prefoldin subunit 6 OS=Morus notabilis GN=L484_021677 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 2.9e-26
Identity = 63/68 (92.65%), Postives = 66/68 (97.06%), Query Frame = 1

Query: 3  LSDIAKNHQVRKKYTIQLGENELVLKELDLLQDDTNVYKLIGPVLVKQDLAEANANVRKR 62
          + DIAKNHQVRKKYTIQLGENELVLKELDLL++D NVYKLIGPVLVKQDLAEANANVRKR
Sbjct: 15 IPDIAKNHQVRKKYTIQLGENELVLKELDLLKEDANVYKLIGPVLVKQDLAEANANVRKR 74

Query: 63 IEYISAEL 71
          IEYISAEL
Sbjct: 75 IEYISAEL 82

BLAST of Csa1G448940 vs. TrEMBL
Match: I1LNU5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_12G006600 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 3.7e-26
Identity = 62/66 (93.94%), Postives = 66/66 (100.00%), Query Frame = 1

Query: 5  DIAKNHQVRKKYTIQLGENELVLKELDLLQDDTNVYKLIGPVLVKQDLAEANANVRKRIE 64
          +IAKNHQ+RKKYT+QLGENELVLKELDLL+DDTNVYKLIGPVLVKQDLAEANANVRKRIE
Sbjct: 26 EIAKNHQMRKKYTLQLGENELVLKELDLLKDDTNVYKLIGPVLVKQDLAEANANVRKRIE 85

Query: 65 YISAEL 71
          YISAEL
Sbjct: 86 YISAEL 91

BLAST of Csa1G448940 vs. TrEMBL
Match: A0A0D3D5V3_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 3.7e-26
Identity = 63/68 (92.65%), Postives = 66/68 (97.06%), Query Frame = 1

Query: 5  DIAKNHQVRKKYTIQLGENELVLKELDLLQDDTNVYKLIGPVLVKQDLAEANANVRKRIE 64
          +IAKNHQ+RKKYTIQLGENELVLKELDLL+DD NVYKLIGPVLVKQDLAEANANVRKRIE
Sbjct: 28 EIAKNHQLRKKYTIQLGENELVLKELDLLEDDANVYKLIGPVLVKQDLAEANANVRKRIE 87

Query: 65 YISAELCV 73
          YISAEL V
Sbjct: 88 YISAELYV 95

BLAST of Csa1G448940 vs. TrEMBL
Match: K7LSA3_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_12G006600 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 3.7e-26
Identity = 62/66 (93.94%), Postives = 66/66 (100.00%), Query Frame = 1

Query: 5   DIAKNHQVRKKYTIQLGENELVLKELDLLQDDTNVYKLIGPVLVKQDLAEANANVRKRIE 64
           +IAKNHQ+RKKYT+QLGENELVLKELDLL+DDTNVYKLIGPVLVKQDLAEANANVRKRIE
Sbjct: 72  EIAKNHQMRKKYTLQLGENELVLKELDLLKDDTNVYKLIGPVLVKQDLAEANANVRKRIE 131

Query: 65  YISAEL 71
           YISAEL
Sbjct: 132 YISAEL 137

BLAST of Csa1G448940 vs. TAIR10
Match: AT1G29990.1 (AT1G29990.1 prefoldin 6)

HSP 1 Score: 122.9 bits (307), Expect = 9.4e-29
Identity = 61/66 (92.42%), Postives = 62/66 (93.94%), Query Frame = 1

Query: 5  DIAKNHQVRKKYTIQLGENELVLKELDLLQDDTNVYKLIGPVLVKQDLAEANANVRKRIE 64
          DI KNHQ+RKKYTIQLGENELVLKELDLL++D NVYKLIGPVLVKQDLAEANANVRKRIE
Sbjct: 26 DIGKNHQLRKKYTIQLGENELVLKELDLLEEDANVYKLIGPVLVKQDLAEANANVRKRIE 85

Query: 65 YISAEL 71
          YISAEL
Sbjct: 86 YISAEL 91

BLAST of Csa1G448940 vs. NCBI nr
Match: gi|700210467|gb|KGN65563.1| (hypothetical protein Csa_1G448940 [Cucumis sativus])

HSP 1 Score: 159.5 bits (402), Expect = 2.6e-36
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1

Query: 1  MDLSDIAKNHQVRKKYTIQLGENELVLKELDLLQDDTNVYKLIGPVLVKQDLAEANANVR 60
          MDLSDIAKNHQVRKKYTIQLGENELVLKELDLLQDDTNVYKLIGPVLVKQDLAEANANVR
Sbjct: 1  MDLSDIAKNHQVRKKYTIQLGENELVLKELDLLQDDTNVYKLIGPVLVKQDLAEANANVR 60

Query: 61 KRIEYISAELCVSSSVFHIVF 82
          KRIEYISAELCVSSSVFHIVF
Sbjct: 61 KRIEYISAELCVSSSVFHIVF 81

BLAST of Csa1G448940 vs. NCBI nr
Match: gi|449459354|ref|XP_004147411.1| (PREDICTED: prefoldin subunit 6 [Cucumis sativus])

HSP 1 Score: 130.2 bits (326), Expect = 1.7e-27
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 1

Query: 5  DIAKNHQVRKKYTIQLGENELVLKELDLLQDDTNVYKLIGPVLVKQDLAEANANVRKRIE 64
          DIAKNHQVRKKYTIQLGENELVLKELDLLQDDTNVYKLIGPVLVKQDLAEANANVRKRIE
Sbjct: 27 DIAKNHQVRKKYTIQLGENELVLKELDLLQDDTNVYKLIGPVLVKQDLAEANANVRKRIE 86

Query: 65 YISAEL 71
          YISAEL
Sbjct: 87 YISAEL 92

BLAST of Csa1G448940 vs. NCBI nr
Match: gi|659068358|ref|XP_008444032.1| (PREDICTED: prefoldin subunit 6 [Cucumis melo])

HSP 1 Score: 129.8 bits (325), Expect = 2.2e-27
Identity = 65/66 (98.48%), Postives = 66/66 (100.00%), Query Frame = 1

Query: 5  DIAKNHQVRKKYTIQLGENELVLKELDLLQDDTNVYKLIGPVLVKQDLAEANANVRKRIE 64
          DIAKNHQVRKKYT+QLGENELVLKELDLLQDDTNVYKLIGPVLVKQDLAEANANVRKRIE
Sbjct: 27 DIAKNHQVRKKYTVQLGENELVLKELDLLQDDTNVYKLIGPVLVKQDLAEANANVRKRIE 86

Query: 65 YISAEL 71
          YISAEL
Sbjct: 87 YISAEL 92

BLAST of Csa1G448940 vs. NCBI nr
Match: gi|703154598|ref|XP_010110983.1| (Prefoldin subunit 6 [Morus notabilis])

HSP 1 Score: 125.6 bits (314), Expect = 4.1e-26
Identity = 63/68 (92.65%), Postives = 66/68 (97.06%), Query Frame = 1

Query: 3  LSDIAKNHQVRKKYTIQLGENELVLKELDLLQDDTNVYKLIGPVLVKQDLAEANANVRKR 62
          + DIAKNHQVRKKYTIQLGENELVLKELDLL++D NVYKLIGPVLVKQDLAEANANVRKR
Sbjct: 15 IPDIAKNHQVRKKYTIQLGENELVLKELDLLKEDANVYKLIGPVLVKQDLAEANANVRKR 74

Query: 63 IEYISAEL 71
          IEYISAEL
Sbjct: 75 IEYISAEL 82

BLAST of Csa1G448940 vs. NCBI nr
Match: gi|823248881|ref|XP_012457094.1| (PREDICTED: prefoldin subunit 6-like [Gossypium raimondii])

HSP 1 Score: 125.2 bits (313), Expect = 5.4e-26
Identity = 63/66 (95.45%), Postives = 65/66 (98.48%), Query Frame = 1

Query: 5  DIAKNHQVRKKYTIQLGENELVLKELDLLQDDTNVYKLIGPVLVKQDLAEANANVRKRIE 64
          DIAKNHQVRKKYTIQLGENELVLKELDLL++D NVYKLIGPVLVKQDLAEANANVRKRIE
Sbjct: 28 DIAKNHQVRKKYTIQLGENELVLKELDLLKEDANVYKLIGPVLVKQDLAEANANVRKRIE 87

Query: 65 YISAEL 71
          YISAEL
Sbjct: 88 YISAEL 93

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PFD6_DROME8.3e-1167.31Probable prefoldin subunit 6 OS=Drosophila melanogaster GN=CG7770 PE=2 SV=1[more]
PFD6_HUMAN8.3e-1151.52Prefoldin subunit 6 OS=Homo sapiens GN=PFDN6 PE=1 SV=1[more]
PFD6_MOUSE8.3e-1151.52Prefoldin subunit 6 OS=Mus musculus GN=Pfdn6 PE=1 SV=1[more]
PFD6_BOVIN8.3e-1151.52Prefoldin subunit 6 OS=Bos taurus GN=PFDN6 PE=2 SV=1[more]
PFD6_CANLF8.3e-1151.52Prefoldin subunit 6 OS=Canis lupus familiaris GN=PFDN6 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0LUZ0_CUCSA1.8e-36100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G448940 PE=4 SV=1[more]
W9SEQ9_9ROSA2.9e-2692.65Prefoldin subunit 6 OS=Morus notabilis GN=L484_021677 PE=4 SV=1[more]
I1LNU5_SOYBN3.7e-2693.94Uncharacterized protein OS=Glycine max GN=GLYMA_12G006600 PE=4 SV=1[more]
A0A0D3D5V3_BRAOL3.7e-2692.65Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1[more]
K7LSA3_SOYBN3.7e-2693.94Uncharacterized protein OS=Glycine max GN=GLYMA_12G006600 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G29990.19.4e-2992.42 prefoldin 6[more]
Match NameE-valueIdentityDescription
gi|700210467|gb|KGN65563.1|2.6e-36100.00hypothetical protein Csa_1G448940 [Cucumis sativus][more]
gi|449459354|ref|XP_004147411.1|1.7e-27100.00PREDICTED: prefoldin subunit 6 [Cucumis sativus][more]
gi|659068358|ref|XP_008444032.1|2.2e-2798.48PREDICTED: prefoldin subunit 6 [Cucumis melo][more]
gi|703154598|ref|XP_010110983.1|4.1e-2692.65Prefoldin subunit 6 [Morus notabilis][more]
gi|823248881|ref|XP_012457094.1|5.4e-2695.45PREDICTED: prefoldin subunit 6-like [Gossypium raimondii][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002777PFD_beta-like
IPR009053Prefoldin
Vocabulary: Biological Process
TermDefinition
GO:0006457protein folding
Vocabulary: Cellular Component
TermDefinition
GO:0016272prefoldin complex
Vocabulary: Molecular Function
TermDefinition
GO:0051082unfolded protein binding
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043622 cortical microtubule organization
biological_process GO:0006094 gluconeogenesis
biological_process GO:0006096 glycolytic process
biological_process GO:0006457 protein folding
biological_process GO:0046686 response to cadmium ion
biological_process GO:0009651 response to salt stress
cellular_component GO:0005829 cytosol
cellular_component GO:0016272 prefoldin complex
molecular_function GO:0051082 unfolded protein binding
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU086304cucumber EST collection version 3.0transcribed_cluster
CU099839cucumber EST collection version 3.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G448940.1Csa1G448940.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU099839CU099839transcribed_cluster
CU086304CU086304transcribed_cluster


Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002777Prefoldin beta-likePFAMPF01920Prefoldin_2coord: 5..70
score: 2.2
IPR009053PrefoldinGENE3DG3DSA:1.10.287.370coord: 5..70
score: 2.3
IPR009053PrefoldinunknownSSF46579Prefoldincoord: 5..69
score: 8.63
NoneNo IPR availablePANTHERPTHR21431PREFOLDIN SUBUNIT 6coord: 5..70
score: 1.6
NoneNo IPR availablePANTHERPTHR21431:SF0PREFOLDIN SUBUNIT 6coord: 5..70
score: 1.6

The following gene(s) are paralogous to this gene:

None