Cp4.1LG14g05690 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG14g05690
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
Description40S ribosomal protein S20, putative
LocationCp4.1LG14 : 824218 .. 825925 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CATCGCCACAGAATCATATAAATTGCAATGGCGGCACTCTCGCTCCATTTCTTCGGAGAGAGGCTGCTGGAAACTCAATCGTAGAGATTTGCTGCTCAACCGCCGTCCCAGGTTTCTCTTTTGAATTTTGCAGTTTTGTTTTTTGTTGTTATCTACATTGCTTATTGTTTATTGTATTGTATAGTTATTAAGACCATAACTTTTGCTTCATTATGATGAGAATTCTTAATGTGTACAAGTTATAAAACTAGGTTATCTATTTCACCTCCATTTTTGTTTTTGACTCCTGTGGTTGAATTATTTTTGCCAATATTCAAAACATTGTTGTGTTCGTTCAACATATTTGTTTTGGACATTCAGGATTACCGGAAGTATGGCGTACGCAGCAATGAAACCGACTAAGGCAGGCTTAGAAGATACGCAAGAGCAAATTCATAAGATCAGGATTACGCTCTCCTCCAAAAATGTTAAGAATCTCGAAAAAGGTATATATATATATATATATATATATTTTTTTTTTGTGTACTTTGGATTAGTTTTGTTTTTTTGTTTTTTTTGTTTTTTTTAAATTGTAATTAAGTTAATATGGCACTCAAATGGGATTGCATCTTTGATTCTGTAGTTATCTGTTAACTTTGATGTGAAGTAAGTCGGATGTTACTTGGTAATTTTTTTTTGCAATGATCTGATTATTAGTTATAAGCGTGAACAAATTGTAGAGAGATATTATTGTTGGATAGAATGGATGTAGGATCCCTATTACTTGTTGACTGCCGAACATTATCCTGGAACTGTCAAATAACTTCTTAGGATTGCAGTCTGTTTTCGCCTGATGTTGTTGCAATTTTAAGTCCTCACTTTATGGACTTAAAAGTGCGTAGTTGGCCTATCGTGTAGTTGAGTTTTTCTTTTTCATAGTTGTTCCAATCGGCGCCTTTGGAAATTCGTTTGACATCATTTTGAATCAATAGTTTGTGCCGACTTGGTTCGTGGTGCCAAGGACAAGAGGTTGAGGGTCAAAGGACCAGTAAGAATGCCCACTAAGGTTCTACACATTACAACCAGAAAATCTCCATGCGGTGAAGGTACTTTGTTTTCCATATACCTATGATTTTCCGAACTAATCCAATGTGATATATCCATTCTAAAAATCATTGATACCTTAAATCCGAGTGTGTTGTTGATTTCATCGTTAAATTCATCCCAATTCTTATTGTAATAATTCCTTCACTTGTTTTTTCATTGCAGGTACCAACACCTGGGACAGATTTGAGCTACGCGTCCACAAGCGAGTTATTGACCTTTTCAGCTCTGCTGATGTAGTGAAGCAGATTACCTCTATCACCATTGAACCTGGTGTGGAGGTTGAGGTCACCATTGCCGATCAATGAATGCACTCTTTTCATGTTTTGCCTATTTTTAGTCTCATTAGACAGTTGTTACTTTTTGAGTCTGGATCATACCTGTGAGGGTTTGTGGCGTTTTAAATGCAATAGTTGTTCCCATTATATGTTGAAGCTAACGACATTGAGAGTTTTCTATTCCTGCCAAAAAATTTCTTGCGTTAGAACTATGTTAATTACATTATCTATGCAGATTCTGTATCAACAGCTGTCATTTGTCCTAATTGAGATTTTAAATACGCAGTGCTTTAAATCCAGACATCACGATTCTTTCAATTGTAAATCACACGAGCATTTTTTTTTTT

mRNA sequence

CATCGCCACAGAATCATATAAATTGCAATGGCGGCACTCTCGCTCCATTTCTTCGGAGAGAGGCTGCTGGAAACTCAATCGTAGAGATTTGCTGCTCAACCGCCGTCCCAGGATTACCGGAAGTATGGCGTACGCAGCAATGAAACCGACTAAGGCAGGCTTAGAAGATACGCAAGAGCAAATTCATAAGATCAGGATTACGCTCTCCTCCAAAAATGTTAAGAATCTCGAAAAAGTTTGTGCCGACTTGGTTCGTGGTGCCAAGGACAAGAGGTTGAGGGTCAAAGGACCAGTAAGAATGCCCACTAAGGTTCTACACATTACAACCAGAAAATCTCCATGCGGTGAAGGTACCAACACCTGGGACAGATTTGAGCTACGCGTCCACAAGCGAGTTATTGACCTTTTCAGCTCTGCTGATGTAGTGAAGCAGATTACCTCTATCACCATTGAACCTGGTGTGGAGGTTGAGGTCACCATTGCCGATCAATGAATGCACTCTTTTCATGTTTTGCCTATTTTTAGTCTCATTAGACAGTTGTTACTTTTTGAGTCTGGATCATACCTGTGAGGGTTTGTGGCGTTTTAAATGCAATAGTTGTTCCCATTATATGTTGAAGCTAACGACATTGAGAGTTTTCTATTCCTGCCAAAAAATTTCTTGCGTTAGAACTATGTTAATTACATTATCTATGCAGATTCTGTATCAACAGCTGTCATTTGTCCTAATTGAGATTTTAAATACGCAGTGCTTTAAATCCAGACATCACGATTCTTTCAATTGTAAATCACACGAGCATTTTTTTTTTT

Coding sequence (CDS)

ATGGCGTACGCAGCAATGAAACCGACTAAGGCAGGCTTAGAAGATACGCAAGAGCAAATTCATAAGATCAGGATTACGCTCTCCTCCAAAAATGTTAAGAATCTCGAAAAAGTTTGTGCCGACTTGGTTCGTGGTGCCAAGGACAAGAGGTTGAGGGTCAAAGGACCAGTAAGAATGCCCACTAAGGTTCTACACATTACAACCAGAAAATCTCCATGCGGTGAAGGTACCAACACCTGGGACAGATTTGAGCTACGCGTCCACAAGCGAGTTATTGACCTTTTCAGCTCTGCTGATGTAGTGAAGCAGATTACCTCTATCACCATTGAACCTGGTGTGGAGGTTGAGGTCACCATTGCCGATCAATGA

Protein sequence

MAYAAMKPTKAGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIADQ
Homology
[Close]
BLAST of Cp4.1LG14g05690 vs. Swiss-Prot
Match: RS202_ARATH (40S ribosomal protein S20-2 OS=Arabidopsis thaliana GN=RPS20B PE=2 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 2.5e-56
Identity = 112/121 (92.56%), Postives = 113/121 (93.39%), Query Frame = 1 

Query: 1   MAYAAMKPTKAGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAY  MKPTKAGLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYEPMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]
BLAST of Cp4.1LG14g05690 vs. Swiss-Prot
Match: RS201_ARATH (40S ribosomal protein S20-1 OS=Arabidopsis thaliana GN=RPS20A PE=2 SV=2)

HSP 1 Score: 216.1 bits (549), Expect = 2.2e-55
Identity = 110/120 (91.67%), Postives = 112/120 (93.33%), Query Frame = 1 

Query: 2   AYAAMKPTKAGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 61
           AY  MKP KAGLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPT
Sbjct: 4   AYQPMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT 63

Query: 62  KVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 121
           KVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIAD
Sbjct: 64  KVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 123

[Close]
BLAST of Cp4.1LG14g05690 vs. Swiss-Prot
Match: RS20_ORYSJ (40S ribosomal protein S20 OS=Oryza sativa subsp. japonica GN=RPS20 PE=2 SV=2)

HSP 1 Score: 201.1 bits (510), Expect = 7.2e-51
Identity = 103/123 (83.74%), Postives = 111/123 (90.24%), Query Frame = 1 

Query: 1   MAYAA-MKPTKAGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRM 60
           +AYA  MK  K G E +QE  H+IRITLSSK+VKNLEKVC DLV+GAKDK L+VKGPVRM
Sbjct: 6   VAYAPPMKSGKIGFESSQEVQHRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRM 65

Query: 61  PTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTI 120
           PTKVLHITTRKSPCGEGTNTWDRFE+RVHKRVIDL SSADVVKQITSITIEPGVEVEVTI
Sbjct: 66  PTKVLHITTRKSPCGEGTNTWDRFEMRVHKRVIDLVSSADVVKQITSITIEPGVEVEVTI 125

Query: 121 ADQ 123
           +DQ
Sbjct: 126 SDQ 128

[Close]
BLAST of Cp4.1LG14g05690 vs. Swiss-Prot
Match: RS20_XENLA (40S ribosomal protein S20 OS=Xenopus laevis GN=rps20 PE=1 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 4.7e-42
Identity = 83/114 (72.81%), Postives = 102/114 (89.47%), Query Frame = 1 

Query: 8   PTKAGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHIT 67
           P KA + D +  IH+IRITL+S+NVK+LEKVCADL+RGAK+K L+VKGPVRMPTK L IT
Sbjct: 6   PGKAPV-DQEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRIT 65

Query: 68  TRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 122
           TRK+PCGEG+ TWDRF++R+HKR+IDL S +++VKQITSI+IEPGVEVEVTIAD
Sbjct: 66  TRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIAD 118

[Close]
BLAST of Cp4.1LG14g05690 vs. Swiss-Prot
Match: RS20_MACFA (40S ribosomal protein S20 OS=Macaca fascicularis GN=RPS20 PE=3 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.0e-41
Identity = 82/117 (70.09%), Postives = 101/117 (86.32%), Query Frame = 1 

Query: 5   AMKPTKAGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVL 64
           A K T     + +  IH+IRITL+S+NVK+LEKVCADL+RGAK+K L+VKGPVRMPTK L
Sbjct: 2   AFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTL 61

Query: 65  HITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 122
            ITTRK+PCGEG+ TWDRF++R+HKR+IDL S +++VKQITSI+IEPGVEVEVTIAD
Sbjct: 62  RITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIAD 118

[Close]
BLAST of Cp4.1LG14g05690 vs. TrEMBL
Match: A0A0A0KL82_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G171160 PE=3 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 2.5e-58
Identity = 118/121 (97.52%), Postives = 119/121 (98.35%), Query Frame = 1 

Query: 1   MAYAAMKPTKAGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTK GLED QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVL+ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]
BLAST of Cp4.1LG14g05690 vs. TrEMBL
Match: A0A0D2S4U3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G008300 PE=3 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 3.2e-58
Identity = 117/121 (96.69%), Postives = 119/121 (98.35%), Query Frame = 1 

Query: 1   MAYAAMKPTKAGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTK GLE++QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEESQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]
BLAST of Cp4.1LG14g05690 vs. TrEMBL
Match: A0A0S3T7G9_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.10G246700 PE=3 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 4.2e-58
Identity = 116/121 (95.87%), Postives = 119/121 (98.35%), Query Frame = 1 

Query: 1   MAYAAMKPTKAGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTK GLEDT+EQIHKIRITLSSKNVKNLEKVCADLVRGA+DKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDTEEQIHKIRITLSSKNVKNLEKVCADLVRGARDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDL+SS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]
BLAST of Cp4.1LG14g05690 vs. TrEMBL
Match: A0A0L9T8E2_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan303s004300 PE=3 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 4.2e-58
Identity = 116/121 (95.87%), Postives = 119/121 (98.35%), Query Frame = 1 

Query: 1   MAYAAMKPTKAGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTK GLEDT+EQIHKIRITLSSKNVKNLEKVCADLVRGA+DKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDTEEQIHKIRITLSSKNVKNLEKVCADLVRGARDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDL+SS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]
BLAST of Cp4.1LG14g05690 vs. TrEMBL
Match: A0A0B0N2B4_GOSAR (40S ribosomal S20-2-like protein OS=Gossypium arboreum GN=F383_33121 PE=3 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 5.5e-58
Identity = 117/121 (96.69%), Postives = 118/121 (97.52%), Query Frame = 1 

Query: 1   MAYAAMKPTKAGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTK GLE+ QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEEPQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]
BLAST of Cp4.1LG14g05690 vs. TAIR10
Match: AT3G47370.2 (AT3G47370.2 Ribosomal protein S10p/S20e family protein)

HSP 1 Score: 219.2 bits (557), Expect = 1.4e-57
Identity = 112/121 (92.56%), Postives = 113/121 (93.39%), Query Frame = 1 

Query: 1   MAYAAMKPTKAGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAY  MKPTKAGLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYEPMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]
BLAST of Cp4.1LG14g05690 vs. TAIR10
Match: AT3G45030.1 (AT3G45030.1 Ribosomal protein S10p/S20e family protein)

HSP 1 Score: 216.1 bits (549), Expect = 1.2e-56
Identity = 110/120 (91.67%), Postives = 112/120 (93.33%), Query Frame = 1 

Query: 2   AYAAMKPTKAGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 61
           AY  MKP KAGLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPT
Sbjct: 4   AYQPMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT 63

Query: 62  KVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 121
           KVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIAD
Sbjct: 64  KVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 123

[Close]
BLAST of Cp4.1LG14g05690 vs. TAIR10
Match: AT5G62300.1 (AT5G62300.1 Ribosomal protein S10p/S20e family protein)

HSP 1 Score: 216.1 bits (549), Expect = 1.2e-56
Identity = 110/120 (91.67%), Postives = 112/120 (93.33%), Query Frame = 1 

Query: 2   AYAAMKPTKAGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 61
           AY  MKP KAGLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPT
Sbjct: 4   AYQPMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT 63

Query: 62  KVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 121
           KVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIAD
Sbjct: 64  KVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 123

[Close]
BLAST of Cp4.1LG14g05690 vs. TAIR10
Match: AT3G13120.1 (AT3G13120.1 Ribosomal protein S10p/S20e family protein)

HSP 1 Score: 50.8 bits (120), Expect = 6.8e-07
Identity = 33/99 (33.33%), Postives = 52/99 (52.53%), Query Frame = 1 

Query: 22  KIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWD 81
           KIRI L S  V  +E  C  ++  A++   +  GPV +PTK       KSP       + 
Sbjct: 94  KIRIKLRSYWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARF- 153

Query: 82  RFELRVHKRVID-LFSSADVVKQITSITIEPGVEVEVTI 120
            FE+R H+R+ID L+ +A  +  +  + +  GV+VEV +
Sbjct: 154 HFEIRTHQRMIDILYPTAQTIDSLMQLDLPAGVDVEVKL 191

[Close]
BLAST of Cp4.1LG14g05690 vs. NCBI nr
Match: gi|659077257|ref|XP_008439109.1| (PREDICTED: 40S ribosomal protein S20-2-like [Cucumis melo])

HSP 1 Score: 239.6 bits (610), Expect = 2.9e-60
Identity = 121/122 (99.18%), Postives = 121/122 (99.18%), Query Frame = 1 

Query: 1   MAYAAMKPTKAGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTK GLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 DQ 123
           DQ
Sbjct: 121 DQ 122

[Close]
BLAST of Cp4.1LG14g05690 vs. NCBI nr
Match: gi|659073124|ref|XP_008467267.1| (PREDICTED: 40S ribosomal protein S20-2 [Cucumis melo])

HSP 1 Score: 235.3 bits (599), Expect = 5.5e-59
Identity = 119/121 (98.35%), Postives = 119/121 (98.35%), Query Frame = 1 

Query: 1   MAYAAMKPTKAGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTK GLED QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]
BLAST of Cp4.1LG14g05690 vs. NCBI nr
Match: gi|449451803|ref|XP_004143650.1| (PREDICTED: 40S ribosomal protein S20-2 [Cucumis sativus])

HSP 1 Score: 232.6 bits (592), Expect = 3.6e-58
Identity = 118/121 (97.52%), Postives = 119/121 (98.35%), Query Frame = 1 

Query: 1   MAYAAMKPTKAGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTK GLED QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVL+ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]
BLAST of Cp4.1LG14g05690 vs. NCBI nr
Match: gi|747059828|ref|XP_011076314.1| (PREDICTED: 40S ribosomal protein S20-2 [Sesamum indicum])

HSP 1 Score: 232.3 bits (591), Expect = 4.6e-58
Identity = 117/121 (96.69%), Postives = 119/121 (98.35%), Query Frame = 1 

Query: 1   MAYAAMKPTKAGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTK GLE++QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 73  MAYAAMKPTKPGLEESQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 132

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 133 TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 192

Query: 121 D 122
           D
Sbjct: 193 D 193

[Close]
BLAST of Cp4.1LG14g05690 vs. NCBI nr
Match: gi|747078702|ref|XP_011086523.1| (PREDICTED: 40S ribosomal protein S20-2-like [Sesamum indicum])

HSP 1 Score: 232.3 bits (591), Expect = 4.6e-58
Identity = 117/121 (96.69%), Postives = 119/121 (98.35%), Query Frame = 1 

Query: 1   MAYAAMKPTKAGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTK GLE++QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEESQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

The following BLAST results are available for this feature:
BLAST of Cp4.1LG14g05690 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RS202_ARATH2.5e-5692.5640S ribosomal protein S20-2 OS=Arabidopsis thaliana GN=RPS20B PE=2 SV=1[more]
RS201_ARATH2.2e-5591.6740S ribosomal protein S20-1 OS=Arabidopsis thaliana GN=RPS20A PE=2 SV=2[more]
RS20_ORYSJ7.2e-5183.7440S ribosomal protein S20 OS=Oryza sativa subsp. japonica GN=RPS20 PE=2 SV=2[more]
RS20_XENLA4.7e-4272.8140S ribosomal protein S20 OS=Xenopus laevis GN=rps20 PE=1 SV=1[more]
RS20_MACFA1.0e-4170.0940S ribosomal protein S20 OS=Macaca fascicularis GN=RPS20 PE=3 SV=1[more]
BLAST of Cp4.1LG14g05690 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KL82_CUCSA2.5e-5897.52Uncharacterized protein OS=Cucumis sativus GN=Csa_5G171160 PE=3 SV=1[more]
A0A0D2S4U3_GOSRA3.2e-5896.69Uncharacterized protein OS=Gossypium raimondii GN=B456_007G008300 PE=3 SV=1[more]
A0A0S3T7G9_PHAAN4.2e-5895.87Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.10G246700 PE=... [more]
A0A0L9T8E2_PHAAN4.2e-5895.87Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan303s004300 PE=3 SV=1[more]
A0A0B0N2B4_GOSAR5.5e-5896.6940S ribosomal S20-2-like protein OS=Gossypium arboreum GN=F383_33121 PE=3 SV=1[more]
BLAST of Cp4.1LG14g05690 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G47370.21.4e-5792.56 Ribosomal protein S10p/S20e family protein[more]
AT3G45030.11.2e-5691.67 Ribosomal protein S10p/S20e family protein[more]
AT5G62300.11.2e-5691.67 Ribosomal protein S10p/S20e family protein[more]
AT3G13120.16.8e-0733.33 Ribosomal protein S10p/S20e family protein[more]
BLAST of Cp4.1LG14g05690 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659077257|ref|XP_008439109.1|2.9e-6099.18PREDICTED: 40S ribosomal protein S20-2-like [Cucumis melo][more]
gi|659073124|ref|XP_008467267.1|5.5e-5998.35PREDICTED: 40S ribosomal protein S20-2 [Cucumis melo][more]
gi|449451803|ref|XP_004143650.1|3.6e-5897.52PREDICTED: 40S ribosomal protein S20-2 [Cucumis sativus][more]
gi|747059828|ref|XP_011076314.1|4.6e-5896.69PREDICTED: 40S ribosomal protein S20-2 [Sesamum indicum][more]
gi|747078702|ref|XP_011086523.1|4.6e-5896.69PREDICTED: 40S ribosomal protein S20-2-like [Sesamum indicum][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0015935small ribosomal subunit
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR027486Ribosomal_S10_dom
IPR018268Ribosomal_S10_CS
IPR005729Ribosomal_S10_euk/arc
IPR001848Ribosomal_S10
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0005515 protein binding
molecular_function GO:0016829 lyase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG14g05690.1Cp4.1LG14g05690.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001848Ribosomal protein S10PRINTSPR00971RIBOSOMALS10coord: 79..93
score: 5.4E-14coord: 22..35
score: 5.4E-14coord: 57..72
score: 5.4
IPR001848Ribosomal protein S10HAMAPMF_00508Ribosomal_S10coord: 20..119
score: 1
IPR001848Ribosomal protein S10PANTHERPTHR1170030S RIBOSOMAL PROTEIN S10 FAMILY MEMBERcoord: 1..121
score: 1.7
IPR005729Ribosomal protein S10, eukaryotic/archaealTIGRFAMsTIGR01046TIGR01046coord: 21..119
score: 1.7
IPR018268Ribosomal protein S10, conserved sitePROSITEPS00361RIBOSOMAL_S10coord: 46..61
scor
IPR027486Ribosomal protein S10 domainGENE3DG3DSA:3.30.70.600coord: 20..121
score: 8.0
IPR027486Ribosomal protein S10 domainPFAMPF00338Ribosomal_S10coord: 24..118
score: 4.2
IPR027486Ribosomal protein S10 domainSMARTSM01403Ribosomal_S10_2coord: 24..118
score: 2.0
IPR027486Ribosomal protein S10 domainunknownSSF54999Ribosomal protein S10coord: 22..119
score: 1.11
NoneNo IPR availablePANTHERPTHR11700:SF10SUBFAMILY NOT NAMEDcoord: 1..121
score: 1.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG14g05690Cucsa.251470Cucumber (Gy14) v1cgycpeB0673
Cp4.1LG14g05690CmaCh04G003230Cucurbita maxima (Rimu)cmacpeB715
Cp4.1LG14g05690CmoCh04G003390Cucurbita moschata (Rifu)cmocpeB668
Cp4.1LG14g05690CmoCh16G001890Cucurbita moschata (Rifu)cmocpeB307
Cp4.1LG14g05690CmoCh02G010290Cucurbita moschata (Rifu)cmocpeB557
Cp4.1LG14g05690Cla006255Watermelon (97103) v1cpewmB227
Cp4.1LG14g05690Csa3G176340Cucumber (Chinese Long) v2cpecuB214
Cp4.1LG14g05690MELO3C006829Melon (DHL92) v3.5.1cpemeB190
Cp4.1LG14g05690ClCG05G007460Watermelon (Charleston Gray)cpewcgB207
Cp4.1LG14g05690CSPI03G16100Wild cucumber (PI 183967)cpecpiB217
Cp4.1LG14g05690Lsi05G013110Bottle gourd (USVL1VR-Ls)cpelsiB172
Cp4.1LG14g05690MELO3C006829.2Melon (DHL92) v3.6.1cpemedB233
Cp4.1LG14g05690CsaV3_3G016300Cucumber (Chinese Long) v3cpecucB0257
Cp4.1LG14g05690Bhi01G000913Wax gourdcpewgoB0298
Cp4.1LG14g05690CsGy3G016200Cucumber (Gy14) v2cgybcpeB327
Cp4.1LG14g05690Carg08463Silver-seed gourdcarcpeB0998
Cp4.1LG14g05690Carg16728Silver-seed gourdcarcpeB1215
Cp4.1LG14g05690Carg08001Silver-seed gourdcarcpeB0523
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG14g05690Cp4.1LG01g03730Cucurbita pepo (Zucchini)cpecpeB234
Cp4.1LG14g05690Cp4.1LG05g07130Cucurbita pepo (Zucchini)cpecpeB245
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG14g05690Cucurbita pepo (Zucchini)cpecpeB232
Cp4.1LG14g05690Cucurbita maxima (Rimu)cmacpeB344
Cp4.1LG14g05690Silver-seed gourdcarcpeB1272