CSPI03G16100 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI03G16100
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
Description40S ribosomal protein S20
LocationChr3 : 12065154 .. 12066807 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGAAAAAAAAACCCTAATCGCTCCCGAATCATATAAATCGTAACATCGTCACTCTCGTTCTCCTTCTTTCAGAGGCAGCTGAATACGCAATTGTTGAGATCTCCTTCGCACCCGCCGTCTCAGGTTTCTCTCTTTTTCTTATCTCCATTGTTTATTGTTTCTTGTATTTTGGACTTCTTATGACCATAAACACTTCCTGTGGTTGAGTTTCGTTTTGTCAATATTGAAAACATTGTTGGGTTGGTTCAACAGATTCATTTTGGAAACAGGAAAGTATGGCGTACGCAGCAATGAAACCAACTAAGCCAGGCTTAGAAGACACGCAAGAGCAAATCCATAAGATCAGGATTACACTCTCCTCCAAAAATGTCAAGAACCTCGAGAAAGGTATTCATTCTTACATGTTGGATTATTGTTGTTGTTGTTTTCTTCTTCTTTTGTAATTTAGTGAATATGGGACTCAAATGAGACTGCGTTTTCGTTTCTTTAGTTAGTTAACTTTCATGTCACTAGTAGAGGATGATTGGTTGGTAATTTTCTTACAATGCTCTGATTATGAATACGATATGATGTTGTAAATACGTGAACAAATTATAGGGATAGTATTGTTGGATAGAATGGTTGAAGGATCCCTATTATGTGCCTAATGACCAATGTGAGTCTAGGGGTTGTTAAATTACTTCTTAAGATTGTAGTCTGTTTTGGTGGATGTCAGCATTGTTAATCCTCACTCCATTGATTTCAACTGCATAGTTGGATTATCATATAATTGGGTTTTTATTTTTCAAAGTTGTCCAATTCAATTAGTTTGTTGGTTTGATGTCATTTTTAATCAATAGTCTGCGCGGATTTGGTTCGTGGTGCGAAGGACAAGAGGTTGAGGGTGAAGGGACCAGTGAGAATGCCCACTAAAGTTCTTCTCATCACAACCAGAAAATCTCCATGTGGTGAAGGTACTTTATTTTCCACTTATCTGTGAACTTCTGAGTTTAAGTTCATTTTTCTCCTGGATTTGAGACTAATATATGTACATATCCCTTCGTGGCGGTTCATTGCATTTGGAACTCATTTCTTGTGAAGTCATTTGAATATTTGCTATCAAATTTGGAGAGGGGTGGATTCTTTTGGTTTTTATAGATATGAATCCGATGTTGAAAAATCATCAAAGGTCAATTCTTAGTGAAACTATTTCTTTGTTCGGTTCTTTATTGTAGGTACCAACACATGGGACAGATTTGAACTTCGTGTCCACAAGCGGGTTATCGACCTTTTCAGCTCTGCTGATGTAGTGAAGCAGATTACCTCCATCACCATTGAACCTGGGGTGGAGGTTGAGGTCACCATCGCCGATCAATGAGTGCACTCTTTTCATGTTTAGACTATTTTTAGTCTCATTAGACAGTTGTTACTTTTTGGGTTTGGAGCATACCTGTCAGGGTCATTGGGGTTTAAATGCAATAGTTGTTCCCATTATATGTTGAAATTAAAGACATTGATAGTGTTTCAATTCCTGGCAAATTTTTCTTGCTTTAGAACTAATGTTAATTTTGGCTATCTATGCAGATTTTGTATCTATAGCTGTGAATTCTCTTAATTGAGATTTAAATGTGCAGTGCTTGAATATCCATATCACGGTTCTTTAAATTCCAATCAC

mRNA sequence

ATGGCGTACGCAGCAATGAAACCAACTAAGCCAGGCTTAGAAGACACGCAAGAGCAAATCCATAAGATCAGGATTACACTCTCCTCCAAAAATGTCAAGAACCTCGAGAAAGTCTGCGCGGATTTGGTTCGTGGTGCGAAGGACAAGAGGTTGAGGGTGAAGGGACCAGTGAGAATGCCCACTAAAGTTCTTCTCATCACAACCAGAAAATCTCCATGTGGTGAAGGTACCAACACATGGGACAGATTTGAACTTCGTGTCCACAAGCGGGTTATCGACCTTTTCAGCTCTGCTGATGTAGTGAAGCAGATTACCTCCATCACCATTGAACCTGGGGTGGAGGTTGAGGTCACCATCGCCGATCAATGA

Coding sequence (CDS)

ATGGCGTACGCAGCAATGAAACCAACTAAGCCAGGCTTAGAAGACACGCAAGAGCAAATCCATAAGATCAGGATTACACTCTCCTCCAAAAATGTCAAGAACCTCGAGAAAGTCTGCGCGGATTTGGTTCGTGGTGCGAAGGACAAGAGGTTGAGGGTGAAGGGACCAGTGAGAATGCCCACTAAAGTTCTTCTCATCACAACCAGAAAATCTCCATGTGGTGAAGGTACCAACACATGGGACAGATTTGAACTTCGTGTCCACAAGCGGGTTATCGACCTTTTCAGCTCTGCTGATGTAGTGAAGCAGATTACCTCCATCACCATTGAACCTGGGGTGGAGGTTGAGGTCACCATCGCCGATCAATGA
Homology
[Close]
BLAST of CSPI03G16100 vs. Swiss-Prot
Match: RS202_ARATH (40S ribosomal protein S20-2 OS=Arabidopsis thaliana GN=RPS20B PE=2 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 5.7e-56
Identity = 111/121 (91.74%), Postives = 112/121 (92.56%), Query Frame = 1 

Query: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAY  MKPTK GLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYEPMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLLITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]
BLAST of CSPI03G16100 vs. Swiss-Prot
Match: RS201_ARATH (40S ribosomal protein S20-1 OS=Arabidopsis thaliana GN=RPS20A PE=2 SV=2)

HSP 1 Score: 214.9 bits (546), Expect = 4.8e-55
Identity = 109/120 (90.83%), Postives = 111/120 (92.50%), Query Frame = 1 

Query: 2   AYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 61
           AY  MKP K GLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPT
Sbjct: 4   AYQPMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT 63

Query: 62  KVLLITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 121
           KVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIAD
Sbjct: 64  KVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 123

[Close]
BLAST of CSPI03G16100 vs. Swiss-Prot
Match: RS20_ORYSJ (40S ribosomal protein S20 OS=Oryza sativa subsp. japonica GN=RPS20 PE=2 SV=2)

HSP 1 Score: 197.2 bits (500), Expect = 1.0e-49
Identity = 102/123 (82.93%), Postives = 110/123 (89.43%), Query Frame = 1 

Query: 1   MAYAA-MKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRM 60
           +AYA  MK  K G E +QE  H+IRITLSSK+VKNLEKVC DLV+GAKDK L+VKGPVRM
Sbjct: 6   VAYAPPMKSGKIGFESSQEVQHRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRM 65

Query: 61  PTKVLLITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTI 120
           PTKVL ITTRKSPCGEGTNTWDRFE+RVHKRVIDL SSADVVKQITSITIEPGVEVEVTI
Sbjct: 66  PTKVLHITTRKSPCGEGTNTWDRFEMRVHKRVIDLVSSADVVKQITSITIEPGVEVEVTI 125

Query: 121 ADQ 123
           +DQ
Sbjct: 126 SDQ 128

[Close]
BLAST of CSPI03G16100 vs. Swiss-Prot
Match: RS20_XENLA (40S ribosomal protein S20 OS=Xenopus laevis GN=rps20 PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 6.1e-42
Identity = 80/107 (74.77%), Postives = 98/107 (91.59%), Query Frame = 1 

Query: 15  DTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLLITTRKSPCG 74
           D +  IH+IRITL+S+NVK+LEKVCADL+RGAK+K L+VKGPVRMPTK L ITTRK+PCG
Sbjct: 12  DQEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCG 71

Query: 75  EGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 122
           EG+ TWDRF++R+HKR+IDL S +++VKQITSI+IEPGVEVEVTIAD
Sbjct: 72  EGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIAD 118

[Close]
BLAST of CSPI03G16100 vs. Swiss-Prot
Match: RS20_MACFA (40S ribosomal protein S20 OS=Macaca fascicularis GN=RPS20 PE=3 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 8.0e-42
Identity = 82/117 (70.09%), Postives = 101/117 (86.32%), Query Frame = 1 

Query: 5   AMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVL 64
           A K T     + +  IH+IRITL+S+NVK+LEKVCADL+RGAK+K L+VKGPVRMPTK L
Sbjct: 2   AFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTL 61

Query: 65  LITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 122
            ITTRK+PCGEG+ TWDRF++R+HKR+IDL S +++VKQITSI+IEPGVEVEVTIAD
Sbjct: 62  RITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIAD 118

[Close]
BLAST of CSPI03G16100 vs. TrEMBL
Match: A0A0A0L681_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G176340 PE=3 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 7.8e-60
Identity = 119/122 (97.54%), Postives = 120/122 (98.36%), Query Frame = 1 

Query: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLLITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLLITTRKSPCGEGTNTWDRFELRVHKRVID+FSSADVV QI SITIEPGVEVEVTIA
Sbjct: 61  TKVLLITTRKSPCGEGTNTWDRFELRVHKRVIDIFSSADVVNQIASITIEPGVEVEVTIA 120

Query: 121 DQ 123
           DQ
Sbjct: 121 DQ 122

[Close]
BLAST of CSPI03G16100 vs. TrEMBL
Match: A0A0A0KL82_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G171160 PE=3 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 3.9e-59
Identity = 119/121 (98.35%), Postives = 119/121 (98.35%), Query Frame = 1 

Query: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLED QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLLITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVL ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]
BLAST of CSPI03G16100 vs. TrEMBL
Match: A0A0D2S4U3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G008300 PE=3 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 3.3e-58
Identity = 117/121 (96.69%), Postives = 119/121 (98.35%), Query Frame = 1 

Query: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLE++QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEESQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLLITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVL ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]
BLAST of CSPI03G16100 vs. TrEMBL
Match: A0A0S3T7G9_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.10G246700 PE=3 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 4.3e-58
Identity = 116/121 (95.87%), Postives = 119/121 (98.35%), Query Frame = 1 

Query: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLEDT+EQIHKIRITLSSKNVKNLEKVCADLVRGA+DKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDTEEQIHKIRITLSSKNVKNLEKVCADLVRGARDKRLRVKGPVRMP 60

Query: 61  TKVLLITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVL ITTRKSPCGEGTNTWDRFELRVHKRVIDL+SS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]
BLAST of CSPI03G16100 vs. TrEMBL
Match: A0A0L9T8E2_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan303s004300 PE=3 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 4.3e-58
Identity = 116/121 (95.87%), Postives = 119/121 (98.35%), Query Frame = 1 

Query: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLEDT+EQIHKIRITLSSKNVKNLEKVCADLVRGA+DKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDTEEQIHKIRITLSSKNVKNLEKVCADLVRGARDKRLRVKGPVRMP 60

Query: 61  TKVLLITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVL ITTRKSPCGEGTNTWDRFELRVHKRVIDL+SS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]
BLAST of CSPI03G16100 vs. TAIR10
Match: AT3G47370.2 (AT3G47370.2 Ribosomal protein S10p/S20e family protein)

HSP 1 Score: 218.0 bits (554), Expect = 3.2e-57
Identity = 111/121 (91.74%), Postives = 112/121 (92.56%), Query Frame = 1 

Query: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAY  MKPTK GLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYEPMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLLITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]
BLAST of CSPI03G16100 vs. TAIR10
Match: AT3G45030.1 (AT3G45030.1 Ribosomal protein S10p/S20e family protein)

HSP 1 Score: 214.9 bits (546), Expect = 2.7e-56
Identity = 109/120 (90.83%), Postives = 111/120 (92.50%), Query Frame = 1 

Query: 2   AYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 61
           AY  MKP K GLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPT
Sbjct: 4   AYQPMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT 63

Query: 62  KVLLITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 121
           KVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIAD
Sbjct: 64  KVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 123

[Close]
BLAST of CSPI03G16100 vs. TAIR10
Match: AT5G62300.1 (AT5G62300.1 Ribosomal protein S10p/S20e family protein)

HSP 1 Score: 214.9 bits (546), Expect = 2.7e-56
Identity = 109/120 (90.83%), Postives = 111/120 (92.50%), Query Frame = 1 

Query: 2   AYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 61
           AY  MKP K GLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPT
Sbjct: 4   AYQPMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT 63

Query: 62  KVLLITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 121
           KVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIAD
Sbjct: 64  KVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 123

[Close]
BLAST of CSPI03G16100 vs. TAIR10
Match: AT3G13120.1 (AT3G13120.1 Ribosomal protein S10p/S20e family protein)

HSP 1 Score: 53.5 bits (127), Expect = 1.1e-07
Identity = 33/99 (33.33%), Postives = 53/99 (53.54%), Query Frame = 1 

Query: 22  KIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLLITTRKSPCGEGTNTWD 81
           KIRI L S  V  +E  C  ++  A++   +  GPV +PTK  +    KSP       + 
Sbjct: 94  KIRIKLRSYWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARF- 153

Query: 82  RFELRVHKRVID-LFSSADVVKQITSITIEPGVEVEVTI 120
            FE+R H+R+ID L+ +A  +  +  + +  GV+VEV +
Sbjct: 154 HFEIRTHQRMIDILYPTAQTIDSLMQLDLPAGVDVEVKL 191

[Close]
BLAST of CSPI03G16100 vs. NCBI nr
Match: gi|659077257|ref|XP_008439109.1| (PREDICTED: 40S ribosomal protein S20-2-like [Cucumis melo])

HSP 1 Score: 239.6 bits (610), Expect = 2.9e-60
Identity = 121/122 (99.18%), Postives = 121/122 (99.18%), Query Frame = 1 

Query: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLLITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVL ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 DQ 123
           DQ
Sbjct: 121 DQ 122

[Close]
BLAST of CSPI03G16100 vs. NCBI nr
Match: gi|778679344|ref|XP_004148131.2| (PREDICTED: 40S ribosomal protein S20-2-like [Cucumis sativus])

HSP 1 Score: 237.7 bits (605), Expect = 1.1e-59
Identity = 119/122 (97.54%), Postives = 120/122 (98.36%), Query Frame = 1 

Query: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLLITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLLITTRKSPCGEGTNTWDRFELRVHKRVID+FSSADVV QI SITIEPGVEVEVTIA
Sbjct: 61  TKVLLITTRKSPCGEGTNTWDRFELRVHKRVIDIFSSADVVNQIASITIEPGVEVEVTIA 120

Query: 121 DQ 123
           DQ
Sbjct: 121 DQ 122

[Close]
BLAST of CSPI03G16100 vs. NCBI nr
Match: gi|449451803|ref|XP_004143650.1| (PREDICTED: 40S ribosomal protein S20-2 [Cucumis sativus])

HSP 1 Score: 235.3 bits (599), Expect = 5.5e-59
Identity = 119/121 (98.35%), Postives = 119/121 (98.35%), Query Frame = 1 

Query: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLED QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLLITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVL ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]
BLAST of CSPI03G16100 vs. NCBI nr
Match: gi|659073124|ref|XP_008467267.1| (PREDICTED: 40S ribosomal protein S20-2 [Cucumis melo])

HSP 1 Score: 235.3 bits (599), Expect = 5.5e-59
Identity = 119/121 (98.35%), Postives = 119/121 (98.35%), Query Frame = 1 

Query: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLED QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLLITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVL ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]
BLAST of CSPI03G16100 vs. NCBI nr
Match: gi|747078702|ref|XP_011086523.1| (PREDICTED: 40S ribosomal protein S20-2-like [Sesamum indicum])

HSP 1 Score: 232.3 bits (591), Expect = 4.7e-58
Identity = 117/121 (96.69%), Postives = 119/121 (98.35%), Query Frame = 1 

Query: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLE++QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEESQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLLITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVL ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

The following BLAST results are available for this feature:
BLAST of CSPI03G16100 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RS202_ARATH5.7e-5691.7440S ribosomal protein S20-2 OS=Arabidopsis thaliana GN=RPS20B PE=2 SV=1[more]
RS201_ARATH4.8e-5590.8340S ribosomal protein S20-1 OS=Arabidopsis thaliana GN=RPS20A PE=2 SV=2[more]
RS20_ORYSJ1.0e-4982.9340S ribosomal protein S20 OS=Oryza sativa subsp. japonica GN=RPS20 PE=2 SV=2[more]
RS20_XENLA6.1e-4274.7740S ribosomal protein S20 OS=Xenopus laevis GN=rps20 PE=1 SV=1[more]
RS20_MACFA8.0e-4270.0940S ribosomal protein S20 OS=Macaca fascicularis GN=RPS20 PE=3 SV=1[more]
BLAST of CSPI03G16100 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L681_CUCSA7.8e-6097.54Uncharacterized protein OS=Cucumis sativus GN=Csa_3G176340 PE=3 SV=1[more]
A0A0A0KL82_CUCSA3.9e-5998.35Uncharacterized protein OS=Cucumis sativus GN=Csa_5G171160 PE=3 SV=1[more]
A0A0D2S4U3_GOSRA3.3e-5896.69Uncharacterized protein OS=Gossypium raimondii GN=B456_007G008300 PE=3 SV=1[more]
A0A0S3T7G9_PHAAN4.3e-5895.87Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.10G246700 PE=... [more]
A0A0L9T8E2_PHAAN4.3e-5895.87Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan303s004300 PE=3 SV=1[more]
BLAST of CSPI03G16100 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G47370.23.2e-5791.74 Ribosomal protein S10p/S20e family protein[more]
AT3G45030.12.7e-5690.83 Ribosomal protein S10p/S20e family protein[more]
AT5G62300.12.7e-5690.83 Ribosomal protein S10p/S20e family protein[more]
AT3G13120.11.1e-0733.33 Ribosomal protein S10p/S20e family protein[more]
BLAST of CSPI03G16100 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659077257|ref|XP_008439109.1|2.9e-6099.18PREDICTED: 40S ribosomal protein S20-2-like [Cucumis melo][more]
gi|778679344|ref|XP_004148131.2|1.1e-5997.54PREDICTED: 40S ribosomal protein S20-2-like [Cucumis sativus][more]
gi|449451803|ref|XP_004143650.1|5.5e-5998.35PREDICTED: 40S ribosomal protein S20-2 [Cucumis sativus][more]
gi|659073124|ref|XP_008467267.1|5.5e-5998.35PREDICTED: 40S ribosomal protein S20-2 [Cucumis melo][more]
gi|747078702|ref|XP_011086523.1|4.7e-5896.69PREDICTED: 40S ribosomal protein S20-2-like [Sesamum indicum][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001848Ribosomal_S10
IPR005729Ribosomal_S10_euk/arc
IPR018268Ribosomal_S10_CS
IPR027486Ribosomal_S10_dom
IPR001848Ribosomal_S10
IPR005729Ribosomal_S10_euk/arc
IPR018268Ribosomal_S10_CS
IPR027486Ribosomal_S10_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0003723RNA binding
GO:0003735structural constituent of ribosome
GO:0003723RNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0015935small ribosomal subunit
GO:0005622intracellular
GO:0005840ribosome
GO:0015935small ribosomal subunit
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0005515 protein binding
molecular_function GO:0016829 lyase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G16100.2CSPI03G16100.2mRNA
CSPI03G16100.1CSPI03G16100.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001848Ribosomal protein S10PRINTSPR00971RIBOSOMALS10coord: 79..93
score: 2.7E-14coord: 57..72
score: 2.7E-14coord: 22..35
score: 2.7
IPR001848Ribosomal protein S10HAMAPMF_00508Ribosomal_S10coord: 20..119
score: 18
IPR001848Ribosomal protein S10PANTHERPTHR1170030S RIBOSOMAL PROTEIN S10 FAMILY MEMBERcoord: 1..121
score: 5.0
IPR005729Ribosomal protein S10, eukaryotic/archaealTIGRFAMsTIGR01046TIGR01046coord: 21..119
score: 3.5
IPR018268Ribosomal protein S10, conserved sitePROSITEPS00361RIBOSOMAL_S10coord: 46..61
scor
IPR027486Ribosomal protein S10 domainGENE3DG3DSA:3.30.70.600coord: 20..121
score: 7.7
IPR027486Ribosomal protein S10 domainPFAMPF00338Ribosomal_S10coord: 24..118
score: 5.4
IPR027486Ribosomal protein S10 domainSMARTSM01403Ribosomal_S10_2coord: 24..118
score: 9.1
IPR027486Ribosomal protein S10 domainunknownSSF54999Ribosomal protein S10coord: 22..119
score: 1.06
NoneNo IPR availablePANTHERPTHR11700:SF10SUBFAMILY NOT NAMEDcoord: 1..121
score: 5.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI03G16100Cla006255Watermelon (97103) v1cpiwmB231
CSPI03G16100Csa3G176340Cucumber (Chinese Long) v2cpicuB120
CSPI03G16100MELO3C006829Melon (DHL92) v3.5.1cpimeB230
CSPI03G16100ClCG05G007460Watermelon (Charleston Gray)cpiwcgB226
CSPI03G16100Lsi05G013110Bottle gourd (USVL1VR-Ls)cpilsiB208
CSPI03G16100MELO3C006829.2Melon (DHL92) v3.6.1cpimedB224
CSPI03G16100CsaV3_3G016300Cucumber (Chinese Long) v3cpicucB144
CSPI03G16100Cla97C05G089290Watermelon (97103) v2cpiwmbB209
CSPI03G16100Bhi01G000913Wax gourdcpiwgoB269
CSPI03G16100Cucsa.251470Cucumber (Gy14) v1cgycpiB383
CSPI03G16100CmaCh04G003230Cucurbita maxima (Rimu)cmacpiB712
CSPI03G16100CmaCh16G001810Cucurbita maxima (Rimu)cmacpiB335
CSPI03G16100CmoCh16G001890Cucurbita moschata (Rifu)cmocpiB325
CSPI03G16100CmoCh04G003390Cucurbita moschata (Rifu)cmocpiB704
CSPI03G16100Cp4.1LG01g03730Cucurbita pepo (Zucchini)cpecpiB393
CSPI03G16100Cp4.1LG14g05690Cucurbita pepo (Zucchini)cpecpiB217
CSPI03G16100CsGy3G016200Cucumber (Gy14) v2cgybcpiB110
CSPI03G16100Carg16728Silver-seed gourdcarcpiB0905
CSPI03G16100Carg08001Silver-seed gourdcarcpiB0406
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI03G16100Wild cucumber (PI 183967)cpicpiB116
CSPI03G16100Cucumber (Gy14) v1cgycpiB453
CSPI03G16100Cucurbita maxima (Rimu)cmacpiB286
CSPI03G16100Cucurbita maxima (Rimu)cmacpiB601
CSPI03G16100Cucurbita maxima (Rimu)cmacpiB609
CSPI03G16100Cucurbita moschata (Rifu)cmocpiB276
CSPI03G16100Cucurbita moschata (Rifu)cmocpiB589
CSPI03G16100Cucurbita moschata (Rifu)cmocpiB598
CSPI03G16100Cucumber (Chinese Long) v2cpicuB141
CSPI03G16100Melon (DHL92) v3.5.1cpimeB163
CSPI03G16100Watermelon (Charleston Gray)cpiwcgB210
CSPI03G16100Watermelon (97103) v1cpiwmB261
CSPI03G16100Cucurbita pepo (Zucchini)cpecpiB171
CSPI03G16100Cucurbita pepo (Zucchini)cpecpiB721
CSPI03G16100Cucurbita pepo (Zucchini)cpecpiB725
CSPI03G16100Bottle gourd (USVL1VR-Ls)cpilsiB155
CSPI03G16100Melon (DHL92) v3.6.1cpimedB154
CSPI03G16100Cucumber (Gy14) v2cgybcpiB213
CSPI03G16100Silver-seed gourdcarcpiB0955
CSPI03G16100Cucumber (Chinese Long) v3cpicucB169
CSPI03G16100Watermelon (97103) v2cpiwmbB181