CmaCh04G003230 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G003230
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	30S ribosomal protein S10
Location	Cma_Chr04 : 1593757 .. 1596902 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAATGATGAGGACGTGAAGCTTGTGGGTCTCTGGACTAGTCCATTTGTTATGAGGCCCAGAATCGCCCTCAACATCAAATCCGTACACTACGACTTCATTCAAGAAACATTCGGATCCAAAAGCCCGCTTCTTCTCCAATCCAACACTGTTCACAAGAAGATCCCTGTTCTCATTCACGCCGGCAAACCCATCGCCGAATCCTCCATCATCGTTGAGTATATCGATGAAGTCTGGTCCTCCGCTCCGTCCATCCTTCCCTCCGCTCCTTACGATCGCGCCCTAAATCGATTCTGGGCTTCCAAAAGGTAACAAAATCCCCTTAATAATTAATCACTGATTTTGTTCAAATTTAAGTTTAATTGATTGGTTTGTTAATTTGGGTCTTTTTAAATGGACCCAGTTCTACGAGCCAATGAAAGCGAGTATGGGTGCAGAAGGGGCTTATAAATCAAGGGGTGGAAGCGATAGGGTTATTGGAGGAAGCTTTCGGGACTCTGAGCAGAGGGAAGGCGTTCTTGGGCGGAGACCATATTGGGTTTGTTGATATCGCTTTCGGGTCGTTTCTGGGGTGGATTAGAGTGGCGGAGATATCAAATGGGATGAAATTGATAGACGCAGTGTAGACGCCAGGGCTGGACAGATGGGCTCAGAGATTCTCTGCACATCACGTTGTGAAAGATCTGTTGCCTGACACTGCAAAGCTTCTGGAGTTCTCCAATGTTGTCTCAGCCAAACTGAAAGAGAAGCATTGAGCTTCTATCATCTGTAGCGTTTCTTAAGCTGCAGATTATGATTAATAATAATAATCAAAATAAAGTTTTATATATTCATTCTTGAAATATGTTTATTTTGCTTAATATTATTGCAAGAATGGTAGACTATTAAGTGGATTTTTAATATTATAATAATAATAAAACAAATAATAGTAATAATAATAAAAAAAACATTTTGAGATTTGGTTAGCACGATGATCACACATGGGCTGGATAGTGAAAAAAACATTTTTTAAATGGGTGTGAAAATCTCTTCCTAGTAAATACATTTAAAACAGTGAAATTGACGTCGTTACGTAACAAACTAAAGCGAACATAATTTGGTAGCGGTGGACTTGAGTATTACAAATACTATTAGAGGTAGACATTGAGTGTTGTGTCATTGAAAACGCTAGCCTCCAAGGAGGAGTGAATTGTGAGATTGCTCATGGGTTGAAATTTTTTTATTAGACACGTTTTAAAATCATGGAGTTGACAATACGTAATGAACTAAGACAGATAATATCGGATAGGGTTAATGGATAAAATTAGGTGATTAGGTTTGGGTCCTCCCCCAAATGTGAAATAATCAATTGTTGTAGGACCACGTTGTAAATTACATTTAATGAAAGGGCTTATGTGAAATATTCTGGGGGAACTGGACTTACATTGACCCAATGGGCTTCATCTCAAAAAAGAGAAAATAATTGGGTCCAAGTAAGTGGGCCTGGATTCCGAATGATGAACCCGACCCGCCCAGCCCACTTTGAGAACTACCAAAAACCCTAGTAATCGCTACAGAATCATATAAATTGTAGCATTGTCACTTCCGTTTTCCTTCTTTCAGAGAGAGGTAGCTGAAACTGGATACTGAATACTGAATCGTAGAGTTCAACTTCTTTCCCGCCATCCCAGGTTTCGCTTTTGAACTTTGCAGTTTTTATTCTTATATTCATCATCTTGTATTGGAGAGTTTTTAAACATAACTTGTGCTTTGTTATGATGAGATTTCTGAATGTGTATGCGTTATTGAATCTATTTCCATGTCTGATAATTCGACTTTTGTGGTTGAGAAAACATTGTTGGGTTCGTTCGACAGATTCCTCTTCGGATAACAGGAAGAATGGCGTACGCAGCAATGAAACCAACTAAGCCAGGCTTAGAAGATACGCAAGAGCAAATCCATAAGATCAGGATTACTCTCTCCTCAAAAAATGTCAAGAACCTTGAGAAGGGTATCTTCTTCTTCTTCTTCTTCTTCTTCTTTTCAATATGCTGCGTTGTTATTCTTGTTACTGTTTTCCTCTTTTATAATTTGGTGAATGTGTCTCTTCGAACGATATTGCATCATCACATCACTTGTTATGATTTAACTTTTTTTGGCAATTGAGTTTGATGATTACTTCGTAATTCTTGCAATGCTCTGATTATAATAAGTTCTGAGCTTATTAACACGTGAACAATTGTAGAGTGATATTATTGAGTGTATTGACGGATGAATTTTAGTTCAGGAACTATCAAATAACTTCTTAGGATTGTGGTCTTTTTCGATTGATGTTTGTTACGGTGTTGTTAAATCCTCATTTTTTAGGCTTCAAGTTCATAATTGGCTTTTCCAGTAGTGGACTTTTATTTTTGTGAGTTGTTTCATTGAAGGCGTTTTTGGCGATGAGTTTGATATCTGTTTAAATCCATAGTTTGTGCCGACTTGGTTCGTGGTGCCAAGGACAAGAGGTTGAGGGTCAAAGGACCAGTAAGAATGCCCACTAAGGTTCTTCACATCACAACCAGAAAATCTCCATGTGGTGAAGGTACGTAACCAGTTATCTATAAGTTTCTAAACTTGATTTCATCCTTGTAAAACTTGAAAGATTACAACTTTGAATGCATCCCTGTGTTATTGAATTCATTCATTCATTTGTTTTGTAATTGCAGGTACCAACACATGGGACAGATTCGAGCTTCGTGTCCACAAGCGAGTTATCGACCTATTCAGCTCTGCTGATGTAGTGAAGCAGATTACCTCCATCACCATCGAACCTGGTGTGGAGGTTGAGGTCACCATTGCCGATCAATGAATTCTTTCCATGTTTTGCCTATTTATAGTCTCATTAGACAGTTTGTTACTTTTTGGGTTTGGAGCATACCTGTCCAGTGAGGGTTTAAATGCCATAGTTCTTCCCATTACTTGTTGCAATTAACGAGACATTGAGAGACTTTCCTATTCCTGCCAATTTTCTTGCGTTATAATTATGATGCTTATTTCAGTATGTTTTGCAGTTTTTGTATCTAAACTTTAAAAGCTCATGCAATTGTTTTCGGAGTCAAACATAACGAAAAAACATGTTCATCAATTATTCAATATTCAAAATTCATCTTATATAGGCC

mRNA sequence

ATGGCAAATGATGAGGACGTGAAGCTTGTGGGTCTCTGGACTAGTCCATTTGTTATGAGGCCCAGAATCGCCCTCAACATCAAATCCGTACACTACGACTTCATTCAAGAAACATTCGGATCCAAAAGCCCGCTTCTTCTCCAATCCAACACTGTTCACAAGAAGATCCCTGTTCTCATTCACGCCGGCAAACCCATCGCCGAATCCTCCATCATCGTTGAGTATATCGATGAAGTCTGGTCCTCCGCTCCGTCCATCCTTCCCTCCGCTCCTTACGATCGCGCCCTAAATCGATTCTGGGCTTCCAAAAGGGGTGGAAGCGATAGGGTTATTGGAGGAAGCTTTCGGGACTCTGAGCAGAGGGAAGGCGTTCTTGGGCGGAGACCATATTGGAGTTCAACTTCTTTCCCGCCATCCCAGATTCCTCTTCGGATAACAGGAAGAATGGCGTACGCAGCAATGAAACCAACTAAGCCAGGCTTAGAAGATACGCAAGAGCAAATCCATAAGATCAGGATTACTCTCTCCTCAAAAAATGTCAAGAACCTTGAGAAGGTTTGTGCCGACTTGGTTCGTGGTGCCAAGGACAAGAGGTTGAGGGTCAAAGGACCAGTAAGAATGCCCACTAAGGTTCTTCACATCACAACCAGAAAATCTCCATGTGGTGAAGGTACCAACACATGGGACAGATTCGAGCTTCGTGTCCACAAGCGAGTTATCGACCTATTCAGCTCTGCTGATGTAGTGAAGCAGATTACCTCCATCACCATCGAACCTGGTGTGGAGGTTGAGGTCACCATTGCCGATCAATGAATTCTTTCCATGTTTTGCCTATTTATAGTCTCATTAGACAGTTTGTTACTTTTTGGGTTTGGAGCATACCTGTCCAGTGAGGGTTTAAATGCCATAGTTCTTCCCATTACTTGTTGCAATTAACGAGACATTGAGAGACTTTCCTATTCCTGCCAATTTTCTTGCGTTATAATTATGATGCTTATTTCAGTATGTTTTGCAGTTTTTGTATCTAAACTTTAAAAGCTCATGCAATTGTTTTCGGAGTCAAACATAACGAAAAAACATGTTCATCAATTATTCAATATTCAAAATTCATCTTATATAGGCC

Coding sequence (CDS)

ATGGCAAATGATGAGGACGTGAAGCTTGTGGGTCTCTGGACTAGTCCATTTGTTATGAGGCCCAGAATCGCCCTCAACATCAAATCCGTACACTACGACTTCATTCAAGAAACATTCGGATCCAAAAGCCCGCTTCTTCTCCAATCCAACACTGTTCACAAGAAGATCCCTGTTCTCATTCACGCCGGCAAACCCATCGCCGAATCCTCCATCATCGTTGAGTATATCGATGAAGTCTGGTCCTCCGCTCCGTCCATCCTTCCCTCCGCTCCTTACGATCGCGCCCTAAATCGATTCTGGGCTTCCAAAAGGGGTGGAAGCGATAGGGTTATTGGAGGAAGCTTTCGGGACTCTGAGCAGAGGGAAGGCGTTCTTGGGCGGAGACCATATTGGAGTTCAACTTCTTTCCCGCCATCCCAGATTCCTCTTCGGATAACAGGAAGAATGGCGTACGCAGCAATGAAACCAACTAAGCCAGGCTTAGAAGATACGCAAGAGCAAATCCATAAGATCAGGATTACTCTCTCCTCAAAAAATGTCAAGAACCTTGAGAAGGTTTGTGCCGACTTGGTTCGTGGTGCCAAGGACAAGAGGTTGAGGGTCAAAGGACCAGTAAGAATGCCCACTAAGGTTCTTCACATCACAACCAGAAAATCTCCATGTGGTGAAGGTACCAACACATGGGACAGATTCGAGCTTCGTGTCCACAAGCGAGTTATCGACCTATTCAGCTCTGCTGATGTAGTGAAGCAGATTACCTCCATCACCATCGAACCTGGTGTGGAGGTTGAGGTCACCATTGCCGATCAATGA

Protein sequence

MANDEDVKLVGLWTSPFVMRPRIALNIKSVHYDFIQETFGSKSPLLLQSNTVHKKIPVLIHAGKPIAESSIIVEYIDEVWSSAPSILPSAPYDRALNRFWASKRGGSDRVIGGSFRDSEQREGVLGRRPYWSSTSFPPSQIPLRITGRMAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIADQ

Homology

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BLAST of CmaCh04G003230 vs. Swiss-Prot
Match: RS202_ARATH (40S ribosomal protein S20-2 OS=Arabidopsis thaliana GN=RPS20B PE=2 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 1.6e-55
Identity = 111/121 (91.74%), Postives = 112/121 (92.56%), Query Frame = 1


Query: 149 MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 208
           MAY  MKPTK GLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYEPMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 209 TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 268
           TKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 269 D 270
           D
Sbjct: 121 D 121

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BLAST of CmaCh04G003230 vs. Swiss-Prot
Match: RS201_ARATH (40S ribosomal protein S20-1 OS=Arabidopsis thaliana GN=RPS20A PE=2 SV=2)

HSP 1 Score: 214.5 bits (545), Expect = 1.4e-54
Identity = 109/120 (90.83%), Postives = 111/120 (92.50%), Query Frame = 1


Query: 150 AYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 209
           AY  MKP K GLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPT
Sbjct: 4   AYQPMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT 63

Query: 210 KVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 269
           KVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIAD
Sbjct: 64  KVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 123

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BLAST of CmaCh04G003230 vs. Swiss-Prot
Match: RS20_ORYSJ (40S ribosomal protein S20 OS=Oryza sativa subsp. japonica GN=RPS20 PE=2 SV=2)

HSP 1 Score: 200.3 bits (508), Expect = 2.7e-50
Identity = 103/123 (83.74%), Postives = 111/123 (90.24%), Query Frame = 1


Query: 149 MAYAA-MKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRM 208
           +AYA  MK  K G E +QE  H+IRITLSSK+VKNLEKVC DLV+GAKDK L+VKGPVRM
Sbjct: 6   VAYAPPMKSGKIGFESSQEVQHRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRM 65

Query: 209 PTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTI 268
           PTKVLHITTRKSPCGEGTNTWDRFE+RVHKRVIDL SSADVVKQITSITIEPGVEVEVTI
Sbjct: 66  PTKVLHITTRKSPCGEGTNTWDRFEMRVHKRVIDLVSSADVVKQITSITIEPGVEVEVTI 125

Query: 269 ADQ 271
           +DQ
Sbjct: 126 SDQ 128

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BLAST of CmaCh04G003230 vs. Swiss-Prot
Match: RS20_XENLA (40S ribosomal protein S20 OS=Xenopus laevis GN=rps20 PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.3e-41
Identity = 80/107 (74.77%), Postives = 98/107 (91.59%), Query Frame = 1


Query: 163 DTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCG 222
           D +  IH+IRITL+S+NVK+LEKVCADL+RGAK+K L+VKGPVRMPTK L ITTRK+PCG
Sbjct: 12  DQEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCG 71

Query: 223 EGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 270
           EG+ TWDRF++R+HKR+IDL S +++VKQITSI+IEPGVEVEVTIAD
Sbjct: 72  EGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIAD 118

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BLAST of CmaCh04G003230 vs. Swiss-Prot
Match: RS20_HUMAN (40S ribosomal protein S20 OS=Homo sapiens GN=RPS20 PE=1 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.8e-41
Identity = 82/117 (70.09%), Postives = 101/117 (86.32%), Query Frame = 1


Query: 153 AMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVL 212
           A K T     + +  IH+IRITL+S+NVK+LEKVCADL+RGAK+K L+VKGPVRMPTK L
Sbjct: 2   AFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTL 61

Query: 213 HITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 270
            ITTRK+PCGEG+ TWDRF++R+HKR+IDL S +++VKQITSI+IEPGVEVEVTIAD
Sbjct: 62  RITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIAD 118

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BLAST of CmaCh04G003230 vs. TrEMBL
Match: A0A0A0KL82_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G171160 PE=3 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 5.0e-59
Identity = 119/121 (98.35%), Postives = 120/121 (99.17%), Query Frame = 1


Query: 149 MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 208
           MAYAAMKPTKPGLED QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 209 TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 268
           TKVL+ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 269 D 270
           D
Sbjct: 121 D 121

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BLAST of CmaCh04G003230 vs. TrEMBL
Match: A0A0D2S4U3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G008300 PE=3 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 6.5e-59
Identity = 118/121 (97.52%), Postives = 120/121 (99.17%), Query Frame = 1


Query: 149 MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 208
           MAYAAMKPTKPGLE++QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEESQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 209 TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 268
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 269 D 270
           D
Sbjct: 121 D 121

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BLAST of CmaCh04G003230 vs. TrEMBL
Match: A0A0S3T7G9_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.10G246700 PE=3 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 8.5e-59
Identity = 117/121 (96.69%), Postives = 120/121 (99.17%), Query Frame = 1


Query: 149 MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 208
           MAYAAMKPTKPGLEDT+EQIHKIRITLSSKNVKNLEKVCADLVRGA+DKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDTEEQIHKIRITLSSKNVKNLEKVCADLVRGARDKRLRVKGPVRMP 60

Query: 209 TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 268
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDL+SS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 269 D 270
           D
Sbjct: 121 D 121

[Close]

BLAST of CmaCh04G003230 vs. TrEMBL
Match: A0A0L9T8E2_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan303s004300 PE=3 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 8.5e-59
Identity = 117/121 (96.69%), Postives = 120/121 (99.17%), Query Frame = 1


Query: 149 MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 208
           MAYAAMKPTKPGLEDT+EQIHKIRITLSSKNVKNLEKVCADLVRGA+DKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDTEEQIHKIRITLSSKNVKNLEKVCADLVRGARDKRLRVKGPVRMP 60

Query: 209 TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 268
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDL+SS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 269 D 270
           D
Sbjct: 121 D 121

[Close]

BLAST of CmaCh04G003230 vs. TrEMBL
Match: A0A061G153_THECC (Ribosomal protein S10p/S20e family protein isoform 1 OS=Theobroma cacao GN=TCM_014967 PE=3 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 1.1e-58
Identity = 118/121 (97.52%), Postives = 119/121 (98.35%), Query Frame = 1


Query: 149 MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 208
           MAYAAMKPTKPGLE+ QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEEPQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 209 TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 268
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 269 D 270
           D
Sbjct: 121 D 121

[Close]

BLAST of CmaCh04G003230 vs. TAIR10
Match: AT3G47370.2 (AT3G47370.2 Ribosomal protein S10p/S20e family protein)

HSP 1 Score: 217.6 bits (553), Expect = 9.2e-57
Identity = 111/121 (91.74%), Postives = 112/121 (92.56%), Query Frame = 1


Query: 149 MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 208
           MAY  MKPTK GLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYEPMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 209 TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 268
           TKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 269 D 270
           D
Sbjct: 121 D 121

[Close]

BLAST of CmaCh04G003230 vs. TAIR10
Match: AT5G62300.1 (AT5G62300.1 Ribosomal protein S10p/S20e family protein)

HSP 1 Score: 214.5 bits (545), Expect = 7.8e-56
Identity = 109/120 (90.83%), Postives = 111/120 (92.50%), Query Frame = 1


Query: 150 AYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 209
           AY  MKP K GLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPT
Sbjct: 4   AYQPMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT 63

Query: 210 KVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 269
           KVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIAD
Sbjct: 64  KVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 123

[Close]

BLAST of CmaCh04G003230 vs. TAIR10
Match: AT3G45030.1 (AT3G45030.1 Ribosomal protein S10p/S20e family protein)

HSP 1 Score: 214.5 bits (545), Expect = 7.8e-56
Identity = 109/120 (90.83%), Postives = 111/120 (92.50%), Query Frame = 1


Query: 150 AYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 209
           AY  MKP K GLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPT
Sbjct: 4   AYQPMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT 63

Query: 210 KVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 269
           KVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIAD
Sbjct: 64  KVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 123

[Close]

BLAST of CmaCh04G003230 vs. TAIR10
Match: AT1G10370.1 (AT1G10370.1 Glutathione S-transferase family protein)

HSP 1 Score: 159.8 bits (403), Expect = 2.3e-39
Identity = 75/98 (76.53%), Postives = 88/98 (89.80%), Query Frame = 1


Query: 6   DVKLVGLWTSPFVMRPRIALNIKSVHYDFIQETFGSKSPLLLQSNTVHKKIPVLIHAGKP 65
           DVKL+G W SPFVMRPRIALN+KSV Y+F+QETFGSKS LLL+SN VHKKIPVL+HA KP
Sbjct: 5   DVKLIGAWASPFVMRPRIALNLKSVPYEFLQETFGSKSELLLKSNPVHKKIPVLLHADKP 64

Query: 66  IAESSIIVEYIDEVWSSA-PSILPSAPYDRALNRFWAS 103
           ++ES+IIVEYID+ WSS+ PSILPS PYDRA+ RFWA+
Sbjct: 65  VSESNIIVEYIDDTWSSSGPSILPSDPYDRAMARFWAA 102

[Close]

BLAST of CmaCh04G003230 vs. TAIR10
Match: AT1G10360.1 (AT1G10360.1 glutathione S-transferase TAU 18)

HSP 1 Score: 149.1 bits (375), Expect = 4.0e-36
Identity = 70/99 (70.71%), Postives = 84/99 (84.85%), Query Frame = 1


Query: 5   EDVKLVGLWTSPFVMRPRIALNIKSVHYDFIQETFGSKSPLLLQSNTVHKKIPVLIHAGK 64
           EDVKL+G W S +VMR RIAL++KS+ Y+F+QET+GSKS LLL+SN VHKK+PVLIHA K
Sbjct: 4   EDVKLIGSWASVYVMRARIALHLKSISYEFLQETYGSKSELLLKSNPVHKKMPVLIHADK 63

Query: 65  PIAESSIIVEYIDEVW-SSAPSILPSAPYDRALNRFWAS 103
           P+ ES+IIV YIDE W SS PSILPS PYDRA+ RFWA+
Sbjct: 64  PVCESNIIVHYIDEAWNSSGPSILPSHPYDRAIARFWAA 102

[Close]

BLAST of CmaCh04G003230 vs. NCBI nr
Match: gi|659077257|ref|XP_008439109.1| (PREDICTED: 40S ribosomal protein S20-2-like [Cucumis melo])

HSP 1 Score: 242.7 bits (618), Expect = 7.6e-61
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 1


Query: 149 MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 208
           MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 209 TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 268
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 269 DQ 271
           DQ
Sbjct: 121 DQ 122

[Close]

BLAST of CmaCh04G003230 vs. NCBI nr
Match: gi|659073124|ref|XP_008467267.1| (PREDICTED: 40S ribosomal protein S20-2 [Cucumis melo])

HSP 1 Score: 238.8 bits (608), Expect = 1.1e-59
Identity = 120/121 (99.17%), Postives = 120/121 (99.17%), Query Frame = 1


Query: 149 MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 208
           MAYAAMKPTKPGLED QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 209 TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 268
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 269 D 270
           D
Sbjct: 121 D 121

[Close]

BLAST of CmaCh04G003230 vs. NCBI nr
Match: gi|449451803|ref|XP_004143650.1| (PREDICTED: 40S ribosomal protein S20-2 [Cucumis sativus])

HSP 1 Score: 236.1 bits (601), Expect = 7.1e-59
Identity = 119/121 (98.35%), Postives = 120/121 (99.17%), Query Frame = 1


Query: 149 MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 208
           MAYAAMKPTKPGLED QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 209 TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 268
           TKVL+ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 269 D 270
           D
Sbjct: 121 D 121

[Close]

BLAST of CmaCh04G003230 vs. NCBI nr
Match: gi|747078702|ref|XP_011086523.1| (PREDICTED: 40S ribosomal protein S20-2-like [Sesamum indicum])

HSP 1 Score: 235.7 bits (600), Expect = 9.3e-59
Identity = 118/121 (97.52%), Postives = 120/121 (99.17%), Query Frame = 1


Query: 149 MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 208
           MAYAAMKPTKPGLE++QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEESQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 209 TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 268
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 269 D 270
           D
Sbjct: 121 D 121

[Close]

BLAST of CmaCh04G003230 vs. NCBI nr
Match: gi|747059828|ref|XP_011076314.1| (PREDICTED: 40S ribosomal protein S20-2 [Sesamum indicum])

HSP 1 Score: 235.7 bits (600), Expect = 9.3e-59
Identity = 118/121 (97.52%), Postives = 120/121 (99.17%), Query Frame = 1


Query: 149 MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 208
           MAYAAMKPTKPGLE++QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 73  MAYAAMKPTKPGLEESQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 132

Query: 209 TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 268
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 133 TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 192

Query: 269 D 270
           D
Sbjct: 193 D 193

The following BLAST results are available for this feature:

BLAST of CmaCh04G003230 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RS202_ARATH	1.6e-55	91.74	40S ribosomal protein S20-2 OS=Arabidopsis thaliana GN=RPS20B PE=2 SV=1	[more]
RS201_ARATH	1.4e-54	90.83	40S ribosomal protein S20-1 OS=Arabidopsis thaliana GN=RPS20A PE=2 SV=2	[more]
RS20_ORYSJ	2.7e-50	83.74	40S ribosomal protein S20 OS=Oryza sativa subsp. japonica GN=RPS20 PE=2 SV=2	[more]
RS20_XENLA	1.3e-41	74.77	40S ribosomal protein S20 OS=Xenopus laevis GN=rps20 PE=1 SV=1	[more]
RS20_HUMAN	1.8e-41	70.09	40S ribosomal protein S20 OS=Homo sapiens GN=RPS20 PE=1 SV=1	[more]

BLAST of CmaCh04G003230 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KL82_CUCSA	5.0e-59	98.35	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G171160 PE=3 SV=1	[more]
A0A0D2S4U3_GOSRA	6.5e-59	97.52	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G008300 PE=3 SV=1	[more]
A0A0S3T7G9_PHAAN	8.5e-59	96.69	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.10G246700 PE=...	[more]
A0A0L9T8E2_PHAAN	8.5e-59	96.69	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan303s004300 PE=3 SV=1	[more]
A0A061G153_THECC	1.1e-58	97.52	Ribosomal protein S10p/S20e family protein isoform 1 OS=Theobroma cacao GN=TCM_0...	[more]

BLAST of CmaCh04G003230 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G47370.2	9.2e-57	91.74	Ribosomal protein S10p/S20e family protein	[more]
AT5G62300.1	7.8e-56	90.83	Ribosomal protein S10p/S20e family protein	[more]
AT3G45030.1	7.8e-56	90.83	Ribosomal protein S10p/S20e family protein	[more]
AT1G10370.1	2.3e-39	76.53	Glutathione S-transferase family protein	[more]
AT1G10360.1	4.0e-36	70.71	glutathione S-transferase TAU 18	[more]

BLAST of CmaCh04G003230 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659077257\|ref\|XP_008439109.1\|	7.6e-61	100.00	PREDICTED: 40S ribosomal protein S20-2-like [Cucumis melo]	[more]
gi\|659073124\|ref\|XP_008467267.1\|	1.1e-59	99.17	PREDICTED: 40S ribosomal protein S20-2 [Cucumis melo]	[more]
gi\|449451803\|ref\|XP_004143650.1\|	7.1e-59	98.35	PREDICTED: 40S ribosomal protein S20-2 [Cucumis sativus]	[more]
gi\|747078702\|ref\|XP_011086523.1\|	9.3e-59	97.52	PREDICTED: 40S ribosomal protein S20-2-like [Sesamum indicum]	[more]
gi\|747059828\|ref\|XP_011076314.1\|	9.3e-59	97.52	PREDICTED: 40S ribosomal protein S20-2 [Sesamum indicum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001848	Ribosomal_S10
IPR004045	Glutathione_S-Trfase_N
IPR005729	Ribosomal_S10_euk/arc
IPR012336	Thioredoxin-like_fold
IPR018268	Ribosomal_S10_CS
IPR027486	Ribosomal_S10_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome
GO:0005515	protein binding
GO:0003723	RNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0015935	small ribosomal subunit
GO:0005622	intracellular

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G003230.1	CmaCh04G003230.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001848	Ribosomal protein S10	PRINTS	PR00971	RIBOSOMALS10	coord: 227..241 score: 3.0E-13coord: 205..220 score: 3.0E-13coord: 170..183 score: 3.0
IPR001848	Ribosomal protein S10	HAMAP	MF_00508	Ribosomal_S10	coord: 168..267 score: 1
IPR001848	Ribosomal protein S10	PANTHER	PTHR11700	30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER	coord: 60..269 score: 4.2
IPR004045	Glutathione S-transferase, N-terminal	PFAM	PF02798	GST_N	coord: 6..78 score: 2.9
IPR004045	Glutathione S-transferase, N-terminal	PROFILE	PS50404	GST_NTER	coord: 5..84 score: 18
IPR005729	Ribosomal protein S10, eukaryotic/archaeal	TIGRFAMs	TIGR01046	TIGR01046	coord: 169..267 score: 1.5
IPR012336	Thioredoxin-like fold	GENE3D	G3DSA:3.40.30.10		coord: 5..89 score: 1.4
IPR012336	Thioredoxin-like fold	unknown	SSF52833	Thioredoxin-like	coord: 6..84 score: 2.69
IPR018268	Ribosomal protein S10, conserved site	PROSITE	PS00361	RIBOSOMAL_S10	coord: 194..209 scor
IPR027486	Ribosomal protein S10 domain	GENE3D	G3DSA:3.30.70.600		coord: 168..269 score: 7.4
IPR027486	Ribosomal protein S10 domain	PFAM	PF00338	Ribosomal_S10	coord: 172..266 score: 3.5
IPR027486	Ribosomal protein S10 domain	SMART	SM01403	Ribosomal_S10_2	coord: 172..266 score: 2.0
IPR027486	Ribosomal protein S10 domain	unknown	SSF54999	Ribosomal protein S10	coord: 170..267 score: 9.81
None	No IPR available	PANTHER	PTHR11700:SF10	SUBFAMILY NOT NAMED	coord: 60..269 score: 4.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G003230	Cucsa.251470	Cucumber (Gy14) v1	cgycmaB0722
CmaCh04G003230	Cla006255	Watermelon (97103) v1	cmawmB707
CmaCh04G003230	Csa3G176340	Cucumber (Chinese Long) v2	cmacuB703
CmaCh04G003230	MELO3C006829	Melon (DHL92) v3.5.1	cmameB692
CmaCh04G003230	ClCG05G007460	Watermelon (Charleston Gray)	cmawcgB663
CmaCh04G003230	CSPI03G16100	Wild cucumber (PI 183967)	cmacpiB712
CmaCh04G003230	CmoCh16G001890	Cucurbita moschata (Rifu)	cmacmoB701
CmaCh04G003230	Lsi05G013110	Bottle gourd (USVL1VR-Ls)	cmalsiB688
CmaCh04G003230	Cp4.1LG14g05690	Cucurbita pepo (Zucchini)	cmacpeB715
CmaCh04G003230	MELO3C006829.2	Melon (DHL92) v3.6.1	cmamedB779
CmaCh04G003230	CsaV3_3G016300	Cucumber (Chinese Long) v3	cmacucB0838
CmaCh04G003230	Cla97C05G089290	Watermelon (97103) v2	cmawmbB767
CmaCh04G003230	Bhi01G000913	Wax gourd	cmawgoB0856
CmaCh04G003230	CsGy3G016200	Cucumber (Gy14) v2	cgybcmaB417
CmaCh04G003230	Carg16728	Silver-seed gourd	carcmaB1209
CmaCh04G003230	Carg08001	Silver-seed gourd	carcmaB0529

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G003230	Cucurbita maxima (Rimu)	cmacmaB351
CmaCh04G003230	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G003230	Cucurbita pepo (Zucchini)	cmacpeB720