Carg08001 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg08001
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Ribosomal protein S20
Location	Cucurbita_argyrosperma_scaffold_050 : 129172 .. 130782 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAATAATCGCTACAGAATGATATAAATTGTAGCATTGTCGCTTCCGTTTTCCTTCTTTCAGAGAGAGGCAGCTGAAACTGGATACTGAATCGTAGAGTTCAACTTCTTTCCCGCCATCCCAGGTTTCGCTTTTGAACTTTGCAGTTTTTATTCTTATCTTCATCATCTTGTATTGGAGAGTTTTTAAACATAATTTGTGCTTCGTTTTGATGAGATTTCTGAATGTGTAATTGAGTTATTGAATCTATTTCCATGTCTGATTATTCGATTTATGTGGTTGAGAAAACATTGTTGGGTTCGTTCGACAGATTCCTCTTCGGATAACAGGAAGAATGGCGTACGCAGCAATGAAACCAACTAAGCCAGGCTTAGAAGATACGCAAGAGCAAATCCATAAGATCAGGATTACTCTCTCCTCAAAAAATGTCAAGAACCTTGAGAAGGGTATCTTCTTCTTCTTTTTTTTTTAATTTTCAATATGCTGCGTTGTTATTCTTGTTACTGTTTTCTTCTTTTATAATTTAGTGAATGTGTCTCCTCGAACGATATTGCATCATCATATCACTTGTTATGATTTAACTTTTATAGGCATTTGAGTTGGATGATTACTTCGTAATTCTTTCAATGCTCTGATTATTAATAAGTTCTAAGCTTATTAAGACGTGAACAATTGTAGAGTGACATTATTGTTGGATAAAAGGAACGGGGAATCTCCATTATGTATCGAGTGTATTGACGGATGAATTTTAGTTCAGGAATTATCAAATAACTTCTTAGGATTGTGGTCTTTTTCGCTTGATGTTTGTTATGGTGTTGTTAAATCCTCACTTTTTAGGCTTCGAGTTCATTATTGGCTTTTCCAGTAGTGGAATTTTATTTTTCGAAGTTGTTTCATTGAAGGCGTTTTTGGCGATGAGTTTGATATCTGTTTAAATCCATAGTTTGTGCCGACTTGGTTCGTGGTGCCAAGGACAAGAGGTTGAGGGTCAAAGGACCAGTAAGAATGCCCACTAAGGTTCTTCACATCACAACCAGAAAATCTCCATGTGGTGAAGGTACGTAACCATTTATCTATAAGTTTCTAAACTTGATTTCATCCTTATAAAACTTGTAAGATTACAACTTTGAATGCATCCCGTTGTTATTGAATTCATTCATTCATTCATTTGTTTTGTAATTGCAGGTACCAACACATGGGACAGATTCGAGCTTCGTGTCCACAAGCGAGTTATCGACCTATTCAGCTCTGCTGATGTAGTGAAGCAGATTACCTCCATCACCATCGAACCTGGTGTGGAGGTTGAGGTCACCATTGCCGATCAATGAATTCTTTTCATGTCTTGCTTATTTATAGTCTCATTAGACAGTTGTTTACTTTTTGGGTTTGGAGCATACCTGTCCAGTGTGTGGGGTTTAAATGCCATAGTTCTTCCCATTACTTGTTGCAATTAACGAGACATTTAGAGACTTTCCTATTCCTGCCAATTTTCTTGCGTTATAATTATGGTGCTAATTTCAGTATGTTCTGCAGTTTTTGTATCTAAACTTTTAAAAGCTCATTCAATTGTTTTACAGTCAAACATAACGAAAAAACATGTTTATTAAAATTAT

mRNA sequence

TAATAATCGCTACAGAATGATATAAATTGTAGCATTGTCGCTTCCGTTTTCCTTCTTTCAGAGAGAGGCAGCTGAAACTGGATACTGAATCGTAGAGTTCAACTTCTTTCCCGCCATCCCAGATTCCTCTTCGGATAACAGGAAGAATGGCGTACGCAGCAATGAAACCAACTAAGCCAGGCTTAGAAGATACGCAAGAGCAAATCCATAAGATCAGGATTACTCTCTCCTCAAAAAATGTCAAGAACCTTGAGAAGGTTTGTGCCGACTTGGTTCGTGGTGCCAAGGACAAGAGGTTGAGGGTCAAAGGACCAGTAAGAATGCCCACTAAGGTTCTTCACATCACAACCAGAAAATCTCCATGTGGTGAAGGTACCAACACATGGGACAGATTCGAGCTTCGTGTCCACAAGCGAGTTATCGACCTATTCAGCTCTGCTGATGTAGTGAAGCAGATTACCTCCATCACCATCGAACCTGGTGTGGAGGTTGAGGTCACCATTGCCGATCAATGAATTCTTTTCATGTCTTGCTTATTTATAGTCTCATTAGACAGTTGTTTACTTTTTGGGTTTGGAGCATACCTGTCCAGTGTGTGGGGTTTAAATGCCATAGTTCTTCCCATTACTTGTTGCAATTAACGAGACATTTAGAGACTTTCCTATTCCTGCCAATTTTCTTGCGTTATAATTATGGTGCTAATTTCAGTATGTTCTGCAGTTTTTGTATCTAAACTTTTAAAAGCTCATTCAATTGTTTTACAGTCAAACATAACGAAAAAACATGTTTATTAAAATTAT

Coding sequence (CDS)

ATGGCGTACGCAGCAATGAAACCAACTAAGCCAGGCTTAGAAGATACGCAAGAGCAAATCCATAAGATCAGGATTACTCTCTCCTCAAAAAATGTCAAGAACCTTGAGAAGGTTTGTGCCGACTTGGTTCGTGGTGCCAAGGACAAGAGGTTGAGGGTCAAAGGACCAGTAAGAATGCCCACTAAGGTTCTTCACATCACAACCAGAAAATCTCCATGTGGTGAAGGTACCAACACATGGGACAGATTCGAGCTTCGTGTCCACAAGCGAGTTATCGACCTATTCAGCTCTGCTGATGTAGTGAAGCAGATTACCTCCATCACCATCGAACCTGGTGTGGAGGTTGAGGTCACCATTGCCGATCAATGA

Protein sequence

MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIADQ

Homology

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BLAST of Carg08001 vs. NCBI nr
Match: XP_008439109.1 (PREDICTED: 40S ribosomal protein S20-2-like [Cucumis melo] >XP_022941728.1 40S ribosomal protein S20-2-like [Cucurbita moschata] >XP_022973095.1 40S ribosomal protein S20-2-like [Cucurbita maxima] >XP_023516475.1 40S ribosomal protein S20-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 243.0 bits (619), Expect = 5.1e-61
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 DQ 123
           DQ
Sbjct: 121 DQ 122

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BLAST of Carg08001 vs. NCBI nr
Match: XP_022922646.1 (40S ribosomal protein S20-2-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 240.0 bits (611), Expect = 4.3e-60
Identity = 121/122 (99.18%), Postives = 121/122 (99.18%), Query Frame = 0


Query: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTK GLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 34  MAYAAMKPTKAGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 93

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 94  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 153

Query: 121 DQ 123
           DQ
Sbjct: 154 DQ 155

[Close]

BLAST of Carg08001 vs. NCBI nr
Match: XP_022922647.1 (40S ribosomal protein S20-2-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 240.0 bits (611), Expect = 4.3e-60
Identity = 121/122 (99.18%), Postives = 121/122 (99.18%), Query Frame = 0


Query: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTK GLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 34  MAYAAMKPTKAGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 93

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 94  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 153

Query: 121 DQ 123
           DQ
Sbjct: 154 DQ 155

[Close]

BLAST of Carg08001 vs. NCBI nr
Match: XP_022985516.1 (40S ribosomal protein S20-2-like [Cucurbita maxima] >XP_023551840.1 40S ribosomal protein S20-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 240.0 bits (611), Expect = 4.3e-60
Identity = 121/122 (99.18%), Postives = 121/122 (99.18%), Query Frame = 0


Query: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTK GLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKAGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 DQ 123
           DQ
Sbjct: 121 DQ 122

[Close]

BLAST of Carg08001 vs. NCBI nr
Match: XP_024198508.1 (40S ribosomal protein S20-2 [Rosa chinensis] >PRQ59871.1 putative ribosomal protein S10 [Rosa chinensis])

HSP 1 Score: 239.6 bits (610), Expect = 5.7e-60
Identity = 120/122 (98.36%), Postives = 121/122 (99.18%), Query Frame = 0


Query: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLE+TQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEETQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 DQ 123
           DQ
Sbjct: 121 DQ 122

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BLAST of Carg08001 vs. TAIR10
Match: AT3G47370.2 (Ribosomal protein S10p/S20e family protein)

HSP 1 Score: 217.6 bits (553), Expect = 4.2e-57
Identity = 111/121 (91.74%), Postives = 112/121 (92.56%), Query Frame = 0


Query: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAY  MKPTK GLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYEPMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

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BLAST of Carg08001 vs. TAIR10
Match: AT3G45030.1 (Ribosomal protein S10p/S20e family protein)

HSP 1 Score: 214.5 bits (545), Expect = 3.5e-56
Identity = 109/120 (90.83%), Postives = 111/120 (92.50%), Query Frame = 0


Query: 2   AYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 61
           AY  MKP K GLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPT
Sbjct: 4   AYQPMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT 63

Query: 62  KVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 121
           KVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIAD
Sbjct: 64  KVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 123

[Close]

BLAST of Carg08001 vs. TAIR10
Match: AT5G62300.1 (Ribosomal protein S10p/S20e family protein)

HSP 1 Score: 214.5 bits (545), Expect = 3.5e-56
Identity = 109/120 (90.83%), Postives = 111/120 (92.50%), Query Frame = 0


Query: 2   AYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 61
           AY  MKP K GLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPT
Sbjct: 4   AYQPMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT 63

Query: 62  KVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 121
           KVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIAD
Sbjct: 64  KVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 123

[Close]

BLAST of Carg08001 vs. Swiss-Prot
Match: sp|Q9STY6|RS202_ARATH (40S ribosomal protein S20-2 OS=Arabidopsis thaliana OX=3702 GN=RPS20B PE=2 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 7.5e-56
Identity = 111/121 (91.74%), Postives = 112/121 (92.56%), Query Frame = 0


Query: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAY  MKPTK GLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYEPMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of Carg08001 vs. Swiss-Prot
Match: sp|P49200|RS201_ARATH (40S ribosomal protein S20-1 OS=Arabidopsis thaliana OX=3702 GN=RPS20A PE=2 SV=2)

HSP 1 Score: 214.5 bits (545), Expect = 6.4e-55
Identity = 109/120 (90.83%), Postives = 111/120 (92.50%), Query Frame = 0


Query: 2   AYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 61
           AY  MKP K GLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPT
Sbjct: 4   AYQPMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT 63

Query: 62  KVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 121
           KVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIAD
Sbjct: 64  KVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 123

[Close]

BLAST of Carg08001 vs. Swiss-Prot
Match: sp|P35686|RS20_ORYSJ (40S ribosomal protein S20 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS20 PE=2 SV=2)

HSP 1 Score: 200.7 bits (509), Expect = 9.5e-51
Identity = 103/123 (83.74%), Postives = 111/123 (90.24%), Query Frame = 0


Query: 1   MAYA-AMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRM 60
           +AYA  MK  K G E +QE  H+IRITLSSK+VKNLEKVC DLV+GAKDK L+VKGPVRM
Sbjct: 6   VAYAPPMKSGKIGFESSQEVQHRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRM 65

Query: 61  PTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTI 120
           PTKVLHITTRKSPCGEGTNTWDRFE+RVHKRVIDL SSADVVKQITSITIEPGVEVEVTI
Sbjct: 66  PTKVLHITTRKSPCGEGTNTWDRFEMRVHKRVIDLVSSADVVKQITSITIEPGVEVEVTI 125

Query: 121 ADQ 123
           +DQ
Sbjct: 126 SDQ 128

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BLAST of Carg08001 vs. Swiss-Prot
Match: sp|P23403|RS20_XENLA (40S ribosomal protein S20 OS=Xenopus laevis OX=8355 GN=rps20 PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 6.2e-42
Identity = 80/107 (74.77%), Postives = 98/107 (91.59%), Query Frame = 0


Query: 15  DTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCG 74
           D +  IH+IRITL+S+NVK+LEKVCADL+RGAK+K L+VKGPVRMPTK L ITTRK+PCG
Sbjct: 12  DQEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCG 71

Query: 75  EGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 122
           EG+ TWDRF++R+HKR+IDL S +++VKQITSI+IEPGVEVEVTIAD
Sbjct: 72  EGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIAD 118

[Close]

BLAST of Carg08001 vs. Swiss-Prot
Match: sp|Q3ZBH8|RS20_BOVIN (40S ribosomal protein S20 OS=Bos taurus OX=9913 GN=RPS20 PE=3 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 8.1e-42
Identity = 82/117 (70.09%), Postives = 101/117 (86.32%), Query Frame = 0


Query: 5   AMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVL 64
           A K T     + +  IH+IRITL+S+NVK+LEKVCADL+RGAK+K L+VKGPVRMPTK L
Sbjct: 2   AFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTL 61

Query: 65  HITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 122
            ITTRK+PCGEG+ TWDRF++R+HKR+IDL S +++VKQITSI+IEPGVEVEVTIAD
Sbjct: 62  RITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIAD 118

[Close]

BLAST of Carg08001 vs. TrEMBL
Match: tr|A0A1S3AXJ9|A0A1S3AXJ9_CUCME (40S ribosomal protein S20-2-like OS=Cucumis melo OX=3656 GN=LOC103483999 PE=3 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 3.4e-61
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 DQ 123
           DQ
Sbjct: 121 DQ 122

[Close]

BLAST of Carg08001 vs. TrEMBL
Match: tr|A0A2P6SMI1|A0A2P6SMI1_ROSCH (Putative ribosomal protein S10 OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0374951 PE=3 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 3.7e-60
Identity = 120/122 (98.36%), Postives = 121/122 (99.18%), Query Frame = 0


Query: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLE+TQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEETQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 DQ 123
           DQ
Sbjct: 121 DQ 122

[Close]

BLAST of Carg08001 vs. TrEMBL
Match: tr|A0A1S4E624|A0A1S4E624_CUCME (40S ribosomal protein S20-2 OS=Cucumis melo OX=3656 GN=LOC103504663 PE=3 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 6.4e-60
Identity = 120/121 (99.17%), Postives = 120/121 (99.17%), Query Frame = 0


Query: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLED QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of Carg08001 vs. TrEMBL
Match: tr|A0A1R3I786|A0A1R3I786_9ROSI (Ribosomal protein S10 OS=Corchorus olitorius OX=93759 GN=COLO4_24768 PE=3 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 1.9e-59
Identity = 119/121 (98.35%), Postives = 120/121 (99.17%), Query Frame = 0


Query: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLE+TQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEETQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

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BLAST of Carg08001 vs. TrEMBL
Match: tr|A0A1R3IG42|A0A1R3IG42_COCAP (Ribosomal protein S10 OS=Corchorus capsularis OX=210143 GN=CCACVL1_12358 PE=3 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 4.1e-59
Identity = 118/121 (97.52%), Postives = 120/121 (99.17%), Query Frame = 0


Query: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLE+TQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEETQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

The following BLAST results are available for this feature:

BLAST of Carg08001 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008439109.1	5.1e-61	100.00	PREDICTED: 40S ribosomal protein S20-2-like [Cucumis melo] >XP_022941728.1 40S r...	[more]
XP_022922646.1	4.3e-60	99.18	40S ribosomal protein S20-2-like isoform X1 [Cucurbita moschata]	[more]
XP_022922647.1	4.3e-60	99.18	40S ribosomal protein S20-2-like isoform X2 [Cucurbita moschata]	[more]
XP_022985516.1	4.3e-60	99.18	40S ribosomal protein S20-2-like [Cucurbita maxima] >XP_023551840.1 40S ribosoma...	[more]
XP_024198508.1	5.7e-60	98.36	40S ribosomal protein S20-2 [Rosa chinensis] >PRQ59871.1 putative ribosomal prot...	[more]

BLAST of Carg08001 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G47370.2	4.2e-57	91.74	Ribosomal protein S10p/S20e family protein	[more]
AT3G45030.1	3.5e-56	90.83	Ribosomal protein S10p/S20e family protein	[more]
AT5G62300.1	3.5e-56	90.83	Ribosomal protein S10p/S20e family protein	[more]

BLAST of Carg08001 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9STY6\|RS202_ARATH	7.5e-56	91.74	40S ribosomal protein S20-2 OS=Arabidopsis thaliana OX=3702 GN=RPS20B PE=2 SV=1	[more]
sp\|P49200\|RS201_ARATH	6.4e-55	90.83	40S ribosomal protein S20-1 OS=Arabidopsis thaliana OX=3702 GN=RPS20A PE=2 SV=2	[more]
sp\|P35686\|RS20_ORYSJ	9.5e-51	83.74	40S ribosomal protein S20 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS20 PE=2...	[more]
sp\|P23403\|RS20_XENLA	6.2e-42	74.77	40S ribosomal protein S20 OS=Xenopus laevis OX=8355 GN=rps20 PE=1 SV=1	[more]
sp\|Q3ZBH8\|RS20_BOVIN	8.1e-42	70.09	40S ribosomal protein S20 OS=Bos taurus OX=9913 GN=RPS20 PE=3 SV=1	[more]

BLAST of Carg08001 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AXJ9\|A0A1S3AXJ9_CUCME	3.4e-61	100.00	40S ribosomal protein S20-2-like OS=Cucumis melo OX=3656 GN=LOC103483999 PE=3 SV...	[more]
tr\|A0A2P6SMI1\|A0A2P6SMI1_ROSCH	3.7e-60	98.36	Putative ribosomal protein S10 OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g03749...	[more]
tr\|A0A1S4E624\|A0A1S4E624_CUCME	6.4e-60	99.17	40S ribosomal protein S20-2 OS=Cucumis melo OX=3656 GN=LOC103504663 PE=3 SV=1	[more]
tr\|A0A1R3I786\|A0A1R3I786_9ROSI	1.9e-59	98.35	Ribosomal protein S10 OS=Corchorus olitorius OX=93759 GN=COLO4_24768 PE=3 SV=1	[more]
tr\|A0A1R3IG42\|A0A1R3IG42_COCAP	4.1e-59	97.52	Ribosomal protein S10 OS=Corchorus capsularis OX=210143 GN=CCACVL1_12358 PE=3 SV...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0015935	small ribosomal subunit
GO:0005840	ribosome

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **INTERPRO**
Term	Definition
IPR018268	Ribosomal_S10_CS
IPR005729	Ribosomal_S10_euk/arc
IPR036838	Ribosomal_S10_dom_sf
IPR027486	Ribosomal_S10_dom
IPR001848	Ribosomal_S10

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08001-RA	Carg08001-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001848	Ribosomal protein S10	PRINTS	PR00971	RIBOSOMALS10	coord: 79..93 score: 52.69 coord: 22..35 score: 44.51 coord: 57..72 score: 42.43
IPR001848	Ribosomal protein S10	PANTHER	PTHR11700	30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER	coord: 4..122
IPR001848	Ribosomal protein S10	HAMAP	MF_00508	Ribosomal_S10	coord: 20..119 score: 18.39
IPR027486	Ribosomal protein S10 domain	SMART	SM01403	Ribosomal_S10_2	coord: 24..118 e-value: 2.0E-38 score: 143.7
IPR027486	Ribosomal protein S10 domain	PFAM	PF00338	Ribosomal_S10	coord: 24..118 e-value: 4.1E-28 score: 97.4
IPR036838	Ribosomal protein S10 domain superfamily	GENE3D	G3DSA:3.30.70.600		coord: 5..122 e-value: 2.0E-54 score: 184.7
IPR036838	Ribosomal protein S10 domain superfamily	SUPERFAMILY	SSF54999	Ribosomal protein S10	coord: 22..119
IPR005729	Ribosomal protein S10, eukaryotic/archaeal	TIGRFAM	TIGR01046	TIGR01046	coord: 21..119 e-value: 1.7E-40 score: 135.4
None	No IPR available	PANTHER	PTHR11700:SF18	SUBFAMILY NOT NAMED	coord: 4..122
IPR018268	Ribosomal protein S10, conserved site	PROSITE	PS00361	RIBOSOMAL_S10	coord: 46..61

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg08001	Cla006255	Watermelon (97103) v1	carwmB0373
Carg08001	Csa3G176340	Cucumber (Chinese Long) v2	carcuB0401
Carg08001	MELO3C006829	Melon (DHL92) v3.5.1	carmeB0381
Carg08001	ClCG05G007460	Watermelon (Charleston Gray)	carwcgB0372
Carg08001	CSPI03G16100	Wild cucumber (PI 183967)	carcpiB0406
Carg08001	Cucsa.251470	Cucumber (Gy14) v1	carcgyB0437
Carg08001	CmaCh04G003230	Cucurbita maxima (Rimu)	carcmaB0529
Carg08001	CmaCh16G001810	Cucurbita maxima (Rimu)	carcmaB0526
Carg08001	CmoCh04G003390	Cucurbita moschata (Rifu)	carcmoB0514
Carg08001	CmoCh16G001890	Cucurbita moschata (Rifu)	carcmoB0509
Carg08001	Lsi05G013110	Bottle gourd (USVL1VR-Ls)	carlsiB345
Carg08001	Cp4.1LG14g05690	Cucurbita pepo (Zucchini)	carcpeB0523
Carg08001	Cp4.1LG01g03730	Cucurbita pepo (Zucchini)	carcpeB0527
Carg08001	CsGy3G016200	Cucumber (Gy14) v2	carcgybB0381
Carg08001	MELO3C006829.2	Melon (DHL92) v3.6.1	carmedB0385
Carg08001	CsaV3_3G016300	Cucumber (Chinese Long) v3	carcucB0404
Carg08001	Cla97C05G089290	Watermelon (97103) v2	carwmbB0398
Carg08001	Bhi01G000913	Wax gourd	carwgoB0461

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg08001	Carg16728	Silver-seed gourd	carcarB406

The following block(s) are covering this gene:

None