Cp4.1LG01g03730 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g03730
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	40S ribosomal protein S20, putative
Location	Cp4.1LG01 : 1607386 .. 1608971 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATATAAATTGTAGCATTGTCACTTCCGTTTTCCTTCTTTCAGAGAGAGGCAGCTGAAACTGGATACTGAATCGTAGAGTTCAACATCTTTCCCGCCATCCCAGGTTTCGCTTTTGAACTTTGCAGTTTTTATTCTTATCTTCATCATCTTGTATTGGCGAACATAATTTGTGCTTCGTTATGATGAGATTTCTGAATGTGTACGAGTTATTGAATCTATTTCCATGTCTGATTATTCGACTTATGTGGTTGAGAAAACATTGTTGGGTTCGTTCGACAGATTCCTCTTCGGATAACAGGAAGAATGGCGTACGCAGCAATGAAACCAACTAAGCCAGGCTTAGAAGATACGCAAGAGCAAATCCATAAGATCAGGATTACTCTCTCCTCAAAAAATGTCAAGAACCTTGAGAAGGGTATCTTCTTCTACTTCTTCTTCTTTCTTTTTTTTATAAATATGCTGCGTTGTTATTCTTGTTACTGTTTTCTTCTTTTATAATTTAGTGAATGTGTCTCCTCGAACGATATTGCATCATCATATCACTTGTTATGATTTAACTTTTGTAGGCAATTGAGTTGGATGATTACTTCGTAATTCTTGCAATGCTCTGACTATTAATAAGTTCTAAGCTTATTAACACGTGAACAATTGTAGAGTGATATTATTGTTGGATAAAAGGAACGGGGAATCTCCATTATGTATTGAGTGTATTGACGGATGAATTTTAGTTCAGGAATTATCAAATAACTTCTTGATTGTGGTATTTTAAGCTTGATATTTGTTATGGTGTTGTTAAATCCTCACCTTTTAGGCTTCAAGTTCATAATTGGCTTTTCCAGTAGTGGAATTTTATTTTTCTGAGTTGTTTCATTGAAGGCGTTTTTGGCGATGAGTTTGATATCTGTTTAAATCCATAGTTTGTGCCGACTTGGTTCGTGGTGCCAAGGACAAGAGGTTGAGGGTCAAAGGACCAGTAAGAATGCCCACTAAGGTTCTTCACATCACAACCAGAAAATCTCCATGTGGTGAAGGTACGTAACCAGTTATCTATAAGTTTCTAAACTTGATTTCATCCTTATATAACTTGAAAGATTACAACTTTGAATGCATCCCGTTGTTATTGAATCCATCCATTCATTCATTTGTTTTGTAATTGCAGGTACCAACACATGGGACAGATTCGAGCTTCGTGTCCACAAGCGAGTTATCGACCTATTCAGCTCTGCTGATGTAGTGAAGCAGATTACCTCCATCACCATCGAACCTGGTGTGGAGGTTGAGGTCACCATTGCCGATCAATGAATTCTTTTCATGTTTTGCCTATTTATAGTCTCATTAGACAATTGTTTACTTTTTGGGTTTGGAGCATACCTGTCCAGTGTGTGGGGCTTAAATGCCATAGTTCTTCCCATTACTTGTTGCAATTAACGAGACATTGAGAGACTTTTCTATTCCTGCCAATTTTCTTGCGTTATAATTATGCTAATTTCAGTATGTTTTGCAGTTTTTGTATCTAAACTTTAAAAGCTCATGCAATTTGAAACATGTTTATTAAAGTTATGATTCCACTAGACAGTTTAAATCA

mRNA sequence

CATATAAATTGTAGCATTGTCACTTCCGTTTTCCTTCTTTCAGAGAGAGGCAGCTGAAACTGGATACTGAATCGTAGAGTTCAACATCTTTCCCGCCATCCCAGATTCCTCTTCGGATAACAGGAAGAATGGCGTACGCAGCAATGAAACCAACTAAGCCAGGCTTAGAAGATACGCAAGAGCAAATCCATAAGATCAGGATTACTCTCTCCTCAAAAAATGTCAAGAACCTTGAGAAGGTTTGTGCCGACTTGGTTCGTGGTGCCAAGGACAAGAGGTTGAGGGTCAAAGGACCAGTAAGAATGCCCACTAAGGTTCTTCACATCACAACCAGAAAATCTCCATGTGGTGAAGGTACCAACACATGGGACAGATTCGAGCTTCGTGTCCACAAGCGAGTTATCGACCTATTCAGCTCTGCTGATGTAGTGAAGCAGATTACCTCCATCACCATCGAACCTGGTGTGGAGGTTGAGGTCACCATTGCCGATCAATGAATTCTTTTCATGTTTTGCCTATTTATAGTCTCATTAGACAATTGTTTACTTTTTGGGTTTGGAGCATACCTGTCCAGTGTGTGGGGCTTAAATGCCATAGTTCTTCCCATTACTTGTTGCAATTAACGAGACATTGAGAGACTTTTCTATTCCTGCCAATTTTCTTGCGTTATAATTATGCTAATTTCAGTATGTTTTGCAGTTTTTGTATCTAAACTTTAAAAGCTCATGCAATTTGAAACATGTTTATTAAAGTTATGATTCCACTAGACAGTTTAAATCA

Coding sequence (CDS)

ATGGCGTACGCAGCAATGAAACCAACTAAGCCAGGCTTAGAAGATACGCAAGAGCAAATCCATAAGATCAGGATTACTCTCTCCTCAAAAAATGTCAAGAACCTTGAGAAGGTTTGTGCCGACTTGGTTCGTGGTGCCAAGGACAAGAGGTTGAGGGTCAAAGGACCAGTAAGAATGCCCACTAAGGTTCTTCACATCACAACCAGAAAATCTCCATGTGGTGAAGGTACCAACACATGGGACAGATTCGAGCTTCGTGTCCACAAGCGAGTTATCGACCTATTCAGCTCTGCTGATGTAGTGAAGCAGATTACCTCCATCACCATCGAACCTGGTGTGGAGGTTGAGGTCACCATTGCCGATCAATGA

Protein sequence

MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIADQ

Homology

[Close]

BLAST of Cp4.1LG01g03730 vs. Swiss-Prot
Match: RS202_ARATH (40S ribosomal protein S20-2 OS=Arabidopsis thaliana GN=RPS20B PE=2 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 7.4e-56
Identity = 111/121 (91.74%), Postives = 112/121 (92.56%), Query Frame = 1


Query: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAY  MKPTK GLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYEPMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of Cp4.1LG01g03730 vs. Swiss-Prot
Match: RS201_ARATH (40S ribosomal protein S20-1 OS=Arabidopsis thaliana GN=RPS20A PE=2 SV=2)

HSP 1 Score: 214.5 bits (545), Expect = 6.3e-55
Identity = 109/120 (90.83%), Postives = 111/120 (92.50%), Query Frame = 1


Query: 2   AYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 61
           AY  MKP K GLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPT
Sbjct: 4   AYQPMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT 63

Query: 62  KVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 121
           KVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIAD
Sbjct: 64  KVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 123

[Close]

BLAST of Cp4.1LG01g03730 vs. Swiss-Prot
Match: RS20_ORYSJ (40S ribosomal protein S20 OS=Oryza sativa subsp. japonica GN=RPS20 PE=2 SV=2)

HSP 1 Score: 200.7 bits (509), Expect = 9.4e-51
Identity = 103/123 (83.74%), Postives = 111/123 (90.24%), Query Frame = 1


Query: 1   MAYAA-MKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRM 60
           +AYA  MK  K G E +QE  H+IRITLSSK+VKNLEKVC DLV+GAKDK L+VKGPVRM
Sbjct: 6   VAYAPPMKSGKIGFESSQEVQHRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRM 65

Query: 61  PTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTI 120
           PTKVLHITTRKSPCGEGTNTWDRFE+RVHKRVIDL SSADVVKQITSITIEPGVEVEVTI
Sbjct: 66  PTKVLHITTRKSPCGEGTNTWDRFEMRVHKRVIDLVSSADVVKQITSITIEPGVEVEVTI 125

Query: 121 ADQ 123
           +DQ
Sbjct: 126 SDQ 128

[Close]

BLAST of Cp4.1LG01g03730 vs. Swiss-Prot
Match: RS20_XENLA (40S ribosomal protein S20 OS=Xenopus laevis GN=rps20 PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 6.1e-42
Identity = 80/107 (74.77%), Postives = 98/107 (91.59%), Query Frame = 1


Query: 15  DTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCG 74
           D +  IH+IRITL+S+NVK+LEKVCADL+RGAK+K L+VKGPVRMPTK L ITTRK+PCG
Sbjct: 12  DQEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCG 71

Query: 75  EGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 122
           EG+ TWDRF++R+HKR+IDL S +++VKQITSI+IEPGVEVEVTIAD
Sbjct: 72  EGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIAD 118

[Close]

BLAST of Cp4.1LG01g03730 vs. Swiss-Prot
Match: RS20_HUMAN (40S ribosomal protein S20 OS=Homo sapiens GN=RPS20 PE=1 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 8.0e-42
Identity = 82/117 (70.09%), Postives = 101/117 (86.32%), Query Frame = 1


Query: 5   AMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVL 64
           A K T     + +  IH+IRITL+S+NVK+LEKVCADL+RGAK+K L+VKGPVRMPTK L
Sbjct: 2   AFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTL 61

Query: 65  HITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 122
            ITTRK+PCGEG+ TWDRF++R+HKR+IDL S +++VKQITSI+IEPGVEVEVTIAD
Sbjct: 62  RITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIAD 118

[Close]

BLAST of Cp4.1LG01g03730 vs. TrEMBL
Match: A0A0A0KL82_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G171160 PE=3 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 2.2e-59
Identity = 119/121 (98.35%), Postives = 120/121 (99.17%), Query Frame = 1


Query: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLED QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVL+ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of Cp4.1LG01g03730 vs. TrEMBL
Match: A0A0D2S4U3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G008300 PE=3 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 2.9e-59
Identity = 118/121 (97.52%), Postives = 120/121 (99.17%), Query Frame = 1


Query: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLE++QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEESQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of Cp4.1LG01g03730 vs. TrEMBL
Match: A0A0S3T7G9_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.10G246700 PE=3 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 3.8e-59
Identity = 117/121 (96.69%), Postives = 120/121 (99.17%), Query Frame = 1


Query: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLEDT+EQIHKIRITLSSKNVKNLEKVCADLVRGA+DKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDTEEQIHKIRITLSSKNVKNLEKVCADLVRGARDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDL+SS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of Cp4.1LG01g03730 vs. TrEMBL
Match: A0A0L9T8E2_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan303s004300 PE=3 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 3.8e-59
Identity = 117/121 (96.69%), Postives = 120/121 (99.17%), Query Frame = 1


Query: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLEDT+EQIHKIRITLSSKNVKNLEKVCADLVRGA+DKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDTEEQIHKIRITLSSKNVKNLEKVCADLVRGARDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDL+SS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of Cp4.1LG01g03730 vs. TrEMBL
Match: A0A0D2NMN0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G064700 PE=3 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 5.0e-59
Identity = 118/121 (97.52%), Postives = 119/121 (98.35%), Query Frame = 1


Query: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLE+ QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEEPQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of Cp4.1LG01g03730 vs. TAIR10
Match: AT3G47370.2 (AT3G47370.2 Ribosomal protein S10p/S20e family protein)

HSP 1 Score: 217.6 bits (553), Expect = 4.2e-57
Identity = 111/121 (91.74%), Postives = 112/121 (92.56%), Query Frame = 1


Query: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAY  MKPTK GLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYEPMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of Cp4.1LG01g03730 vs. TAIR10
Match: AT3G45030.1 (AT3G45030.1 Ribosomal protein S10p/S20e family protein)

HSP 1 Score: 214.5 bits (545), Expect = 3.5e-56
Identity = 109/120 (90.83%), Postives = 111/120 (92.50%), Query Frame = 1


Query: 2   AYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 61
           AY  MKP K GLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPT
Sbjct: 4   AYQPMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT 63

Query: 62  KVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 121
           KVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIAD
Sbjct: 64  KVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 123

[Close]

BLAST of Cp4.1LG01g03730 vs. TAIR10
Match: AT5G62300.1 (AT5G62300.1 Ribosomal protein S10p/S20e family protein)

HSP 1 Score: 214.5 bits (545), Expect = 3.5e-56
Identity = 109/120 (90.83%), Postives = 111/120 (92.50%), Query Frame = 1


Query: 2   AYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 61
           AY  MKP K GLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPT
Sbjct: 4   AYQPMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT 63

Query: 62  KVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 121
           KVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIAD
Sbjct: 64  KVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 123

[Close]

BLAST of Cp4.1LG01g03730 vs. TAIR10
Match: AT3G13120.1 (AT3G13120.1 Ribosomal protein S10p/S20e family protein)

HSP 1 Score: 51.2 bits (121), Expect = 5.2e-07
Identity = 33/99 (33.33%), Postives = 52/99 (52.53%), Query Frame = 1


Query: 22  KIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWD 81
           KIRI L S  V  +E  C  ++  A++   +  GPV +PTK       KSP       + 
Sbjct: 94  KIRIKLRSYWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARF- 153

Query: 82  RFELRVHKRVID-LFSSADVVKQITSITIEPGVEVEVTI 120
            FE+R H+R+ID L+ +A  +  +  + +  GV+VEV +
Sbjct: 154 HFEIRTHQRMIDILYPTAQTIDSLMQLDLPAGVDVEVKL 191

[Close]

BLAST of Cp4.1LG01g03730 vs. NCBI nr
Match: gi|659077257|ref|XP_008439109.1| (PREDICTED: 40S ribosomal protein S20-2-like [Cucumis melo])

HSP 1 Score: 243.0 bits (619), Expect = 2.6e-61
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 1


Query: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 DQ 123
           DQ
Sbjct: 121 DQ 122

[Close]

BLAST of Cp4.1LG01g03730 vs. NCBI nr
Match: gi|659073124|ref|XP_008467267.1| (PREDICTED: 40S ribosomal protein S20-2 [Cucumis melo])

HSP 1 Score: 238.8 bits (608), Expect = 5.0e-60
Identity = 120/121 (99.17%), Postives = 120/121 (99.17%), Query Frame = 1


Query: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLED QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of Cp4.1LG01g03730 vs. NCBI nr
Match: gi|449451803|ref|XP_004143650.1| (PREDICTED: 40S ribosomal protein S20-2 [Cucumis sativus])

HSP 1 Score: 236.1 bits (601), Expect = 3.2e-59
Identity = 119/121 (98.35%), Postives = 120/121 (99.17%), Query Frame = 1


Query: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLED QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVL+ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of Cp4.1LG01g03730 vs. NCBI nr
Match: gi|747059828|ref|XP_011076314.1| (PREDICTED: 40S ribosomal protein S20-2 [Sesamum indicum])

HSP 1 Score: 235.7 bits (600), Expect = 4.2e-59
Identity = 118/121 (97.52%), Postives = 120/121 (99.17%), Query Frame = 1


Query: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLE++QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 73  MAYAAMKPTKPGLEESQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 132

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 133 TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 192

Query: 121 D 122
           D
Sbjct: 193 D 193

[Close]

BLAST of Cp4.1LG01g03730 vs. NCBI nr
Match: gi|747078702|ref|XP_011086523.1| (PREDICTED: 40S ribosomal protein S20-2-like [Sesamum indicum])

HSP 1 Score: 235.7 bits (600), Expect = 4.2e-59
Identity = 118/121 (97.52%), Postives = 120/121 (99.17%), Query Frame = 1


Query: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLE++QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEESQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g03730 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RS202_ARATH	7.4e-56	91.74	40S ribosomal protein S20-2 OS=Arabidopsis thaliana GN=RPS20B PE=2 SV=1	[more]
RS201_ARATH	6.3e-55	90.83	40S ribosomal protein S20-1 OS=Arabidopsis thaliana GN=RPS20A PE=2 SV=2	[more]
RS20_ORYSJ	9.4e-51	83.74	40S ribosomal protein S20 OS=Oryza sativa subsp. japonica GN=RPS20 PE=2 SV=2	[more]
RS20_XENLA	6.1e-42	74.77	40S ribosomal protein S20 OS=Xenopus laevis GN=rps20 PE=1 SV=1	[more]
RS20_HUMAN	8.0e-42	70.09	40S ribosomal protein S20 OS=Homo sapiens GN=RPS20 PE=1 SV=1	[more]

BLAST of Cp4.1LG01g03730 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KL82_CUCSA	2.2e-59	98.35	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G171160 PE=3 SV=1	[more]
A0A0D2S4U3_GOSRA	2.9e-59	97.52	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G008300 PE=3 SV=1	[more]
A0A0S3T7G9_PHAAN	3.8e-59	96.69	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.10G246700 PE=...	[more]
A0A0L9T8E2_PHAAN	3.8e-59	96.69	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan303s004300 PE=3 SV=1	[more]
A0A0D2NMN0_GOSRA	5.0e-59	97.52	Uncharacterized protein OS=Gossypium raimondii GN=B456_006G064700 PE=3 SV=1	[more]

BLAST of Cp4.1LG01g03730 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G47370.2	4.2e-57	91.74	Ribosomal protein S10p/S20e family protein	[more]
AT3G45030.1	3.5e-56	90.83	Ribosomal protein S10p/S20e family protein	[more]
AT5G62300.1	3.5e-56	90.83	Ribosomal protein S10p/S20e family protein	[more]
AT3G13120.1	5.2e-07	33.33	Ribosomal protein S10p/S20e family protein	[more]

BLAST of Cp4.1LG01g03730 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659077257\|ref\|XP_008439109.1\|	2.6e-61	100.00	PREDICTED: 40S ribosomal protein S20-2-like [Cucumis melo]	[more]
gi\|659073124\|ref\|XP_008467267.1\|	5.0e-60	99.17	PREDICTED: 40S ribosomal protein S20-2 [Cucumis melo]	[more]
gi\|449451803\|ref\|XP_004143650.1\|	3.2e-59	98.35	PREDICTED: 40S ribosomal protein S20-2 [Cucumis sativus]	[more]
gi\|747059828\|ref\|XP_011076314.1\|	4.2e-59	97.52	PREDICTED: 40S ribosomal protein S20-2 [Sesamum indicum]	[more]
gi\|747078702\|ref\|XP_011086523.1\|	4.2e-59	97.52	PREDICTED: 40S ribosomal protein S20-2-like [Sesamum indicum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0015935	small ribosomal subunit
GO:0005840	ribosome

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **INTERPRO**
Term	Definition
IPR027486	Ribosomal_S10_dom
IPR018268	Ribosomal_S10_CS
IPR005729	Ribosomal_S10_euk/arc
IPR001848	Ribosomal_S10

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g03730.1	Cp4.1LG01g03730.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001848	Ribosomal protein S10	PRINTS	PR00971	RIBOSOMALS10	coord: 79..93 score: 5.4E-14coord: 22..35 score: 5.4E-14coord: 57..72 score: 5.4
IPR001848	Ribosomal protein S10	HAMAP	MF_00508	Ribosomal_S10	coord: 20..119 score: 1
IPR001848	Ribosomal protein S10	PANTHER	PTHR11700	30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER	coord: 1..121 score: 3.2
IPR005729	Ribosomal protein S10, eukaryotic/archaeal	TIGRFAMs	TIGR01046	TIGR01046	coord: 21..119 score: 1.7
IPR018268	Ribosomal protein S10, conserved site	PROSITE	PS00361	RIBOSOMAL_S10	coord: 46..61 scor
IPR027486	Ribosomal protein S10 domain	GENE3D	G3DSA:3.30.70.600		coord: 20..121 score: 8.0
IPR027486	Ribosomal protein S10 domain	PFAM	PF00338	Ribosomal_S10	coord: 24..118 score: 4.2
IPR027486	Ribosomal protein S10 domain	SMART	SM01403	Ribosomal_S10_2	coord: 24..118 score: 2.0
IPR027486	Ribosomal protein S10 domain	unknown	SSF54999	Ribosomal protein S10	coord: 22..119 score: 1.11
None	No IPR available	PANTHER	PTHR11700:SF10	SUBFAMILY NOT NAMED	coord: 1..121 score: 3.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g03730	Cucsa.251470	Cucumber (Gy14) v1	cgycpeB0681
Cp4.1LG01g03730	CmoCh16G001890	Cucurbita moschata (Rifu)	cmocpeB311
Cp4.1LG01g03730	Cla006255	Watermelon (97103) v1	cpewmB437
Cp4.1LG01g03730	Csa3G176340	Cucumber (Chinese Long) v2	cpecuB394
Cp4.1LG01g03730	MELO3C006829	Melon (DHL92) v3.5.1	cpemeB414
Cp4.1LG01g03730	ClCG05G007460	Watermelon (Charleston Gray)	cpewcgB399
Cp4.1LG01g03730	CSPI03G16100	Wild cucumber (PI 183967)	cpecpiB393
Cp4.1LG01g03730	Lsi05G013110	Bottle gourd (USVL1VR-Ls)	cpelsiB367
Cp4.1LG01g03730	MELO3C006829.2	Melon (DHL92) v3.6.1	cpemedB483
Cp4.1LG01g03730	CsaV3_3G016300	Cucumber (Chinese Long) v3	cpecucB0492
Cp4.1LG01g03730	Bhi01G000913	Wax gourd	cpewgoB0520
Cp4.1LG01g03730	CsGy3G016200	Cucumber (Gy14) v2	cgybcpeB370
Cp4.1LG01g03730	Carg16728	Silver-seed gourd	carcpeB1216
Cp4.1LG01g03730	Carg08001	Silver-seed gourd	carcpeB0527

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG01g03730	Cp4.1LG14g05690	Cucurbita pepo (Zucchini)	cpecpeB234

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g03730	Cucurbita pepo (Zucchini)	cpecpeB375
Cp4.1LG01g03730	Cucurbita maxima (Rimu)	cmacpeB351
Cp4.1LG01g03730	Cucurbita maxima (Rimu)	cmacpeB720
Cp4.1LG01g03730	Cucurbita moschata (Rifu)	cmocpeB673