Carg08463 (gene) Silver-seed gourd

Overview
NameCarg08463
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionRibosomal protein S20
LocationCucurbita_argyrosperma_scaffold_022 : 459806 .. 461378 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTATGCAGCGATGAAGCCTACGAAGGCTGGTTTGGAGGACGCACAAGAGCAGATCCACAAGATTAGGATCACTCTTTCGTCGAAGAACGTGAAGAACCTTGAGAAGGGTAACTCCTTACCTCTGTGTAGAAGCAAGCTGCTTCAGTTGTTGTCTAGTGTTCAAGTGGAATTTTTCTTTTTTTTTCAATATTGCGTTCGAACTCAAATATTGTTTACGTTTTTCGTAATATGTGTTCTGAAATATATAGATTCTTTTAGACTTGCGTTGTTACTTTTTTTTGTAGTTGTTCATCGTTCATTCTTTTCACCGCTTATGTTCGTCTTGATTTATAATTTGTTATTTATCGCATTGTTATTTTATTGTGGCGTTCGGTATTTATCTGCGAAATCAACTTCGGATGACTGCTCTTGGAGAGTTCCTTGTTGCGAAAATGGGGTCTTTTCTTTGACTTCACTCGTTTAGGGGTTTTTGGGTCCTAATTTCTGTCTCTATAGATAATGGAAATTTAATATATTGATGCCTTCAGATTTGTAAATGTTATCTCAATCCTGGTTGTTCACTTCCTGTTTCAATGAACAGTCTGTGCTGATTTGGTTCGGGGTGCCAAGGACAAGAGATTGAGGGTCAAGGGACCTGTGAGGATGCCAACGAAAGTCCTGCACATCACCACCAGGAAATCTCCATGCGGTGAAGGTACTTTTGAATCAATGCTTTACTTAAAGAGTAATAATGAATTGAGAATGATATTCGGTCTGCTTTTTGATAGAATTTAACATTTAATCAATTCTTTAAGACAAGTATATCTGTATGGTTAGTAAGTTTTTGTCTTTAATTTGAAACCCTCTGGCACTTCGCTACCCTGGTTGTGAAGCCAACAACTCTAGTTTTCCCCCATACCTCTCTTTCCATCTTCCATTCGTCTTTTTCTCGGATTGGCGATCTTTATGTGTTAATTGAATATTCACCCATCATTATACTAGGGGTTCTACACGATGTAATTTAGTGTGGTAATCCTGTTCAGCATGTAATTTAGTGTGGTAATCCTGTTCAGCCTTTAGACCTGTTATTGTTTTTCGTTCTTGTACTTTGGATGGGAGTTATTGTTATTCTGCTGTTTGAATTTGTCTTCATGAATCTGACCCTGCAGTTCTAGAAAAGAAGCCAGAAAATTTATGAACATGAAAACTATAAGTTCTTTGGCATTGTGCTTCGACGAGTTTCACAAAATTTTGTGTTTATTTATTCGGTCTTCATCTGCTGATTCAAAATTACTTGGTTCAGTATTGTTCTATAACCATTCAGTTGCTGTTGGTAATTTTGGCATGCTTTATATGACTGCTGCCTGTTTTGTTGATGATGTCTGAGGCTCTGTGATCTTTCAGATCCAACCTGAAAACTGGTTGCCAATCATTTATTTGTTTTTGAAGGTACCAACACATGGGACAGATTTGAACTTCGTGTTCACAAGCGGGTCATCGACCTCTTTAGCTCTGCTGATGTTGTTAAGCAGATTACATCTATCACCATTGAACCAGGTGTTGAGGTTGAAGTAACAATTGCTGATTGA

mRNA sequence

ATGGCGTATGCAGCGATGAAGCCTACGAAGGCTGGTTTGGAGGACGCACAAGAGCAGATCCACAAGATTAGGATCACTCTTTCGTCGAAGAACGTGAAGAACCTTGAGAAGGTCTGTGCTGATTTGGTTCGGGGTGCCAAGGACAAGAGATTGAGGGTCAAGGGACCTGTGAGGATGCCAACGAAAGTCCTGCACATCACCACCAGGAAATCTCCATGCGGTGAAGGTACCAACACATGGGACAGATTTGAACTTCGTGTTCACAAGCGGGTCATCGACCTCTTTAGCTCTGCTGATGTTGTTAAGCAGATTACATCTATCACCATTGAACCAGGTGTTGAGGTTGAAGTAACAATTGCTGATTGA

Coding sequence (CDS)

ATGGCGTATGCAGCGATGAAGCCTACGAAGGCTGGTTTGGAGGACGCACAAGAGCAGATCCACAAGATTAGGATCACTCTTTCGTCGAAGAACGTGAAGAACCTTGAGAAGGTCTGTGCTGATTTGGTTCGGGGTGCCAAGGACAAGAGATTGAGGGTCAAGGGACCTGTGAGGATGCCAACGAAAGTCCTGCACATCACCACCAGGAAATCTCCATGCGGTGAAGGTACCAACACATGGGACAGATTTGAACTTCGTGTTCACAAGCGGGTCATCGACCTCTTTAGCTCTGCTGATGTTGTTAAGCAGATTACATCTATCACCATTGAACCAGGTGTTGAGGTTGAAGTAACAATTGCTGATTGA

Protein sequence

MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD
Homology
[Close]
BLAST of Carg08463 vs. NCBI nr
Match: XP_022958705.1 (40S ribosomal protein S20-2 [Cucurbita moschata] >XP_022958706.1 40S ribosomal protein S20-2 [Cucurbita moschata] >XP_022929156.1 40S ribosomal protein S20-2 [Cucurbita moschata] >XP_022995277.1 40S ribosomal protein S20-2 [Cucurbita maxima] >XP_022995278.1 40S ribosomal protein S20-2 [Cucurbita maxima] >XP_022970228.1 40S ribosomal protein S20-2 [Cucurbita maxima] >XP_023532340.1 40S ribosomal protein S20-2 [Cucurbita pepo subsp. pepo] >XP_023551673.1 40S ribosomal protein S20-2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 238.8 bits (608), Expect = 9.6e-60
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0 

Query: 1   MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]
BLAST of Carg08463 vs. NCBI nr
Match: XP_022922646.1 (40S ribosomal protein S20-2-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 237.3 bits (604), Expect = 2.8e-59
Identity = 120/121 (99.17%), Postives = 120/121 (99.17%), Query Frame = 0 

Query: 1   MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKAGLED QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 34  MAYAAMKPTKAGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 93

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 94  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 153

Query: 121 D 122
           D
Sbjct: 154 D 154

[Close]
BLAST of Carg08463 vs. NCBI nr
Match: XP_022922647.1 (40S ribosomal protein S20-2-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 237.3 bits (604), Expect = 2.8e-59
Identity = 120/121 (99.17%), Postives = 120/121 (99.17%), Query Frame = 0 

Query: 1   MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKAGLED QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 34  MAYAAMKPTKAGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 93

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 94  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 153

Query: 121 D 122
           D
Sbjct: 154 D 154

[Close]
BLAST of Carg08463 vs. NCBI nr
Match: XP_022985516.1 (40S ribosomal protein S20-2-like [Cucurbita maxima] >XP_023551840.1 40S ribosomal protein S20-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 237.3 bits (604), Expect = 2.8e-59
Identity = 120/121 (99.17%), Postives = 120/121 (99.17%), Query Frame = 0 

Query: 1   MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKAGLED QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKAGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]
BLAST of Carg08463 vs. NCBI nr
Match: XP_008467267.1 (PREDICTED: 40S ribosomal protein S20-2 [Cucumis melo] >XP_016903425.1 PREDICTED: 40S ribosomal protein S20-2 [Cucumis melo])

HSP 1 Score: 236.9 bits (603), Expect = 3.6e-59
Identity = 120/121 (99.17%), Postives = 120/121 (99.17%), Query Frame = 0 

Query: 1   MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTK GLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]
BLAST of Carg08463 vs. TAIR10
Match: AT3G47370.2 (Ribosomal protein S10p/S20e family protein)

HSP 1 Score: 219.2 bits (557), Expect = 1.4e-57
Identity = 112/121 (92.56%), Postives = 113/121 (93.39%), Query Frame = 0 

Query: 1   MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAY  MKPTKAGLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYEPMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]
BLAST of Carg08463 vs. TAIR10
Match: AT3G45030.1 (Ribosomal protein S10p/S20e family protein)

HSP 1 Score: 216.1 bits (549), Expect = 1.2e-56
Identity = 110/120 (91.67%), Postives = 112/120 (93.33%), Query Frame = 0 

Query: 2   AYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 61
           AY  MKP KAGLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPT
Sbjct: 4   AYQPMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT 63

Query: 62  KVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 121
           KVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIAD
Sbjct: 64  KVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 123

[Close]
BLAST of Carg08463 vs. TAIR10
Match: AT5G62300.1 (Ribosomal protein S10p/S20e family protein)

HSP 1 Score: 216.1 bits (549), Expect = 1.2e-56
Identity = 110/120 (91.67%), Postives = 112/120 (93.33%), Query Frame = 0 

Query: 2   AYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 61
           AY  MKP KAGLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPT
Sbjct: 4   AYQPMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT 63

Query: 62  KVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 121
           KVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIAD
Sbjct: 64  KVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 123

[Close]
BLAST of Carg08463 vs. Swiss-Prot
Match: sp|Q9STY6|RS202_ARATH (40S ribosomal protein S20-2 OS=Arabidopsis thaliana OX=3702 GN=RPS20B PE=2 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 2.6e-56
Identity = 112/121 (92.56%), Postives = 113/121 (93.39%), Query Frame = 0 

Query: 1   MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAY  MKPTKAGLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYEPMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]
BLAST of Carg08463 vs. Swiss-Prot
Match: sp|P49200|RS201_ARATH (40S ribosomal protein S20-1 OS=Arabidopsis thaliana OX=3702 GN=RPS20A PE=2 SV=2)

HSP 1 Score: 216.1 bits (549), Expect = 2.2e-55
Identity = 110/120 (91.67%), Postives = 112/120 (93.33%), Query Frame = 0 

Query: 2   AYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 61
           AY  MKP KAGLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPT
Sbjct: 4   AYQPMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT 63

Query: 62  KVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 121
           KVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIAD
Sbjct: 64  KVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 123

[Close]
BLAST of Carg08463 vs. Swiss-Prot
Match: sp|P35686|RS20_ORYSJ (40S ribosomal protein S20 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS20 PE=2 SV=2)

HSP 1 Score: 198.7 bits (504), Expect = 3.6e-50
Identity = 102/122 (83.61%), Postives = 110/122 (90.16%), Query Frame = 0 

Query: 1   MAYA-AMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRM 60
           +AYA  MK  K G E +QE  H+IRITLSSK+VKNLEKVC DLV+GAKDK L+VKGPVRM
Sbjct: 6   VAYAPPMKSGKIGFESSQEVQHRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRM 65

Query: 61  PTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTI 120
           PTKVLHITTRKSPCGEGTNTWDRFE+RVHKRVIDL SSADVVKQITSITIEPGVEVEVTI
Sbjct: 66  PTKVLHITTRKSPCGEGTNTWDRFEMRVHKRVIDLVSSADVVKQITSITIEPGVEVEVTI 125

Query: 121 AD 122
           +D
Sbjct: 126 SD 127

[Close]
BLAST of Carg08463 vs. Swiss-Prot
Match: sp|P23403|RS20_XENLA (40S ribosomal protein S20 OS=Xenopus laevis OX=8355 GN=rps20 PE=1 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 4.7e-42
Identity = 83/114 (72.81%), Postives = 102/114 (89.47%), Query Frame = 0 

Query: 8   PTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHIT 67
           P KA + D +  IH+IRITL+S+NVK+LEKVCADL+RGAK+K L+VKGPVRMPTK L IT
Sbjct: 6   PGKAPV-DQEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRIT 65

Query: 68  TRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 122
           TRK+PCGEG+ TWDRF++R+HKR+IDL S +++VKQITSI+IEPGVEVEVTIAD
Sbjct: 66  TRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIAD 118

[Close]
BLAST of Carg08463 vs. Swiss-Prot
Match: sp|Q3ZBH8|RS20_BOVIN (40S ribosomal protein S20 OS=Bos taurus OX=9913 GN=RPS20 PE=3 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.0e-41
Identity = 82/117 (70.09%), Postives = 101/117 (86.32%), Query Frame = 0 

Query: 5   AMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVL 64
           A K T     + +  IH+IRITL+S+NVK+LEKVCADL+RGAK+K L+VKGPVRMPTK L
Sbjct: 2   AFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTL 61

Query: 65  HITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 122
            ITTRK+PCGEG+ TWDRF++R+HKR+IDL S +++VKQITSI+IEPGVEVEVTIAD
Sbjct: 62  RITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIAD 118

[Close]
BLAST of Carg08463 vs. TrEMBL
Match: tr|A0A1S4E624|A0A1S4E624_CUCME (40S ribosomal protein S20-2 OS=Cucumis melo OX=3656 GN=LOC103504663 PE=3 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 2.4e-59
Identity = 120/121 (99.17%), Postives = 120/121 (99.17%), Query Frame = 0 

Query: 1   MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTK GLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]
BLAST of Carg08463 vs. TrEMBL
Match: tr|A0A1S3AXJ9|A0A1S3AXJ9_CUCME (40S ribosomal protein S20-2-like OS=Cucumis melo OX=3656 GN=LOC103483999 PE=3 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 7.0e-59
Identity = 119/121 (98.35%), Postives = 119/121 (98.35%), Query Frame = 0 

Query: 1   MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTK GLED QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]
BLAST of Carg08463 vs. TrEMBL
Match: tr|A0A0A0KL82|A0A0A0KL82_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G171160 PE=3 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.6e-58
Identity = 119/121 (98.35%), Postives = 120/121 (99.17%), Query Frame = 0 

Query: 1   MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTK GLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVL+ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]
BLAST of Carg08463 vs. TrEMBL
Match: tr|A0A2G9G7I6|A0A2G9G7I6_9LAMI (40S ribosomal protein S20 OS=Handroanthus impetiginosus OX=429701 GN=CDL12_26235 PE=3 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 2.7e-58
Identity = 118/121 (97.52%), Postives = 119/121 (98.35%), Query Frame = 0 

Query: 1   MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTK GLE+AQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]
BLAST of Carg08463 vs. TrEMBL
Match: tr|A0A2P5R6Y8|A0A2P5R6Y8_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA38967 PE=3 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 5.9e-58
Identity = 117/121 (96.69%), Postives = 119/121 (98.35%), Query Frame = 0 

Query: 1   MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTK GLE++QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEESQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

The following BLAST results are available for this feature:
BLAST of Carg08463 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022958705.19.6e-60100.0040S ribosomal protein S20-2 [Cucurbita moschata] >XP_022958706.1 40S ribosomal p... [more]
XP_022922646.12.8e-5999.1740S ribosomal protein S20-2-like isoform X1 [Cucurbita moschata][more]
XP_022922647.12.8e-5999.1740S ribosomal protein S20-2-like isoform X2 [Cucurbita moschata][more]
XP_022985516.12.8e-5999.1740S ribosomal protein S20-2-like [Cucurbita maxima] >XP_023551840.1 40S ribosoma... [more]
XP_008467267.13.6e-5999.17PREDICTED: 40S ribosomal protein S20-2 [Cucumis melo] >XP_016903425.1 PREDICTED:... [more]
BLAST of Carg08463 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G47370.21.4e-5792.56Ribosomal protein S10p/S20e family protein[more]
AT3G45030.11.2e-5691.67Ribosomal protein S10p/S20e family protein[more]
AT5G62300.11.2e-5691.67Ribosomal protein S10p/S20e family protein[more]
BLAST of Carg08463 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9STY6|RS202_ARATH2.6e-5692.5640S ribosomal protein S20-2 OS=Arabidopsis thaliana OX=3702 GN=RPS20B PE=2 SV=1[more]
sp|P49200|RS201_ARATH2.2e-5591.6740S ribosomal protein S20-1 OS=Arabidopsis thaliana OX=3702 GN=RPS20A PE=2 SV=2[more]
sp|P35686|RS20_ORYSJ3.6e-5083.6140S ribosomal protein S20 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS20 PE=2... [more]
sp|P23403|RS20_XENLA4.7e-4272.8140S ribosomal protein S20 OS=Xenopus laevis OX=8355 GN=rps20 PE=1 SV=1[more]
sp|Q3ZBH8|RS20_BOVIN1.0e-4170.0940S ribosomal protein S20 OS=Bos taurus OX=9913 GN=RPS20 PE=3 SV=1[more]
BLAST of Carg08463 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4E624|A0A1S4E624_CUCME2.4e-5999.1740S ribosomal protein S20-2 OS=Cucumis melo OX=3656 GN=LOC103504663 PE=3 SV=1[more]
tr|A0A1S3AXJ9|A0A1S3AXJ9_CUCME7.0e-5998.3540S ribosomal protein S20-2-like OS=Cucumis melo OX=3656 GN=LOC103483999 PE=3 SV... [more]
tr|A0A0A0KL82|A0A0A0KL82_CUCSA1.6e-5898.35Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G171160 PE=3 SV=1[more]
tr|A0A2G9G7I6|A0A2G9G7I6_9LAMI2.7e-5897.5240S ribosomal protein S20 OS=Handroanthus impetiginosus OX=429701 GN=CDL12_26235... [more]
tr|A0A2P5R6Y8|A0A2P5R6Y8_GOSBA5.9e-5896.69Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA38967 PE=3 SV... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0015935small ribosomal subunit
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR018268Ribosomal_S10_CS
IPR005729Ribosomal_S10_euk/arc
IPR036838Ribosomal_S10_dom_sf
IPR027486Ribosomal_S10_dom
IPR001848Ribosomal_S10
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg08463-RACarg08463-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001848Ribosomal protein S10PRINTSPR00971RIBOSOMALS10coord: 79..93
score: 52.69
coord: 22..35
score: 44.51
coord: 57..72
score: 42.43
IPR001848Ribosomal protein S10PANTHERPTHR1170030S RIBOSOMAL PROTEIN S10 FAMILY MEMBERcoord: 4..121
IPR001848Ribosomal protein S10HAMAPMF_00508Ribosomal_S10coord: 20..119
score: 18.39
IPR027486Ribosomal protein S10 domainSMARTSM01403Ribosomal_S10_2coord: 24..118
e-value: 2.0E-38
score: 143.7
IPR027486Ribosomal protein S10 domainPFAMPF00338Ribosomal_S10coord: 24..118
e-value: 4.0E-28
score: 97.4
IPR036838Ribosomal protein S10 domain superfamilyGENE3DG3DSA:3.30.70.600coord: 5..121
e-value: 2.1E-54
score: 184.6
IPR036838Ribosomal protein S10 domain superfamilySUPERFAMILYSSF54999Ribosomal protein S10coord: 22..119
IPR005729Ribosomal protein S10, eukaryotic/archaealTIGRFAMTIGR01046TIGR01046coord: 21..119
e-value: 1.7E-40
score: 135.4
NoneNo IPR availablePANTHERPTHR11700:SF18SUBFAMILY NOT NAMEDcoord: 4..121
IPR018268Ribosomal protein S10, conserved sitePROSITEPS00361RIBOSOMAL_S10coord: 46..61

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg08463Cla003569Watermelon (97103) v1carwmB0710
Carg08463Csa5G171160Cucumber (Chinese Long) v2carcuB0733
Carg08463MELO3C005411Melon (DHL92) v3.5.1carmeB0705
Carg08463ClCG01G005170Watermelon (Charleston Gray)carwcgB0688
Carg08463CSPI05G08050Wild cucumber (PI 183967)carcpiB0749
Carg08463Cucsa.115650Cucumber (Gy14) v1carcgyB0795
Carg08463CmaCh02G010140Cucurbita maxima (Rimu)carcmaB0999
Carg08463CmaCh16G001810Cucurbita maxima (Rimu)carcmaB0994
Carg08463CmaCh15G013850Cucurbita maxima (Rimu)carcmaB0993
Carg08463CmoCh15G014470Cucurbita moschata (Rifu)carcmoB0965
Carg08463CmoCh02G010290Cucurbita moschata (Rifu)carcmoB0971
Carg08463CmoCh16G001890Cucurbita moschata (Rifu)carcmoB0966
Carg08463Lsi09G005470Bottle gourd (USVL1VR-Ls)carlsiB648
Carg08463Cp4.1LG14g05690Cucurbita pepo (Zucchini)carcpeB0998
Carg08463Cp4.1LG05g07130Cucurbita pepo (Zucchini)carcpeB1002
Carg08463Cp4.1LG13g00820Cucurbita pepo (Zucchini)carcpeB0995
Carg08463CsGy5G005440Cucumber (Gy14) v2carcgybB0711
Carg08463MELO3C005411.2Melon (DHL92) v3.6.1carmedB0718
Carg08463CsaV3_5G005450Cucumber (Chinese Long) v3carcucB0752
Carg08463Cla97C01G005400Watermelon (97103) v2carwmbB0741
Carg08463Bhi12G000515Wax gourdcarwgoB0835
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg08463Carg20839Silver-seed gourdcarcarB586
The following block(s) are covering this gene:
GeneOrganismBlock
Carg08463Cucurbita pepo (Zucchini)carcpeB0994
Carg08463Wild cucumber (PI 183967)carcpiB0745
Carg08463Cucumber (Chinese Long) v2carcuB0730
Carg08463Cucumber (Chinese Long) v3carcucB0748
Carg08463Melon (DHL92) v3.5.1carmeB0709
Carg08463Melon (DHL92) v3.6.1carmedB0722
Carg08463Watermelon (Charleston Gray)carwcgB0690
Carg08463Watermelon (97103) v1carwmB0708
Carg08463Watermelon (97103) v2carwmbB0743
Carg08463Wax gourdcarwgoB0834
Carg08463Cucumber (Gy14) v2carcgybB0707
Carg08463Cucurbita maxima (Rimu)carcmaB0996
Carg08463Cucurbita moschata (Rifu)carcmoB0968