CmoCh15G014470 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh15G014470
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	40S ribosomal S20-2-like protein
Location	Cmo_Chr15 : 9832550 .. 9834809 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCTTCCTCCTCCCTAAATCCTCCAACTGCAGAACCTAGCAGCGGAAGCCGCCCTTGCTCCGGTAGTCTTCTCCACCACTTCTGCACCTCTTCACATGGTGGTTGCTGTACTGTTTTCACATCTGATTTCCGTAGTTTTGGAATTTTTGTTTTCAGGAAGTAAGCAAATATGGCGTATGCAGCGATGAAGCCTACGAAGGCTGGTTTGGAGGATGCACAAGAGCAGATCCACAAGATTAGGATCACTCTTTCGTCGAAGAACGTGAAGAACCTTGAAAAGGGTATCTCCTTCCCTCAGTTTTTGAAGCAAGTTGATTTTTTATTTTTTATGATATTATATTCGAACTCTTGTGTTGTTTGTCTCTTGGTTTTGCGTTTTTGTAATGTGTTTCGGAAATATATAGATTCTTCTAAATTTGCGCTATGATTGTTGTTGTTGTTGCTGTTTGTAATTCGTCGGATTTTCATTTTTCATGTTCGTCTTGATCAATGGATTGTTTATTATTGAATTGTTCTTATGTTATGTCCACCGAATGAATTTATGATGGTCGCTTTGAGAGTCTTCCATGATTCAAAGTTGGAATGGAGCCTCTTTCGGGTTTTGACTTTACTGAGCAAGGGTTTTCCTTGCCCTAATTTCTTTGTTTCTATGAATTATTGGAATTTATTGATGTCTTCAGGTTTGTAAATGTTAGCTTAATCCTCACGGGTTACTTTCTTTTTCAATCAATAGTTTGTGCTGATTTGGTTCGGGGTGCCAAGGACAAGAGATTGAGGGTTAAGGGGCCTGTGAGGATGCCAACCAAAGTCCTGCACATCACCACCAGGAAATCTCCCTGCGGTGAAGGTAATTTTGAATCAATGCTTAACTTAAGAATAACTATAAGCCTGTGTTTGGATTTCTCTGGCTGCTTGTTAGTCATTATTACCTGGATCAAAGCCCTGAACTGTATTTTCCATCTTTTATTTTTCTTAACCTGGGATTGGTATCATGATATTTGTAGCTTCACACCTTGTGTTTTAGTCTGTTTTTAAAAGCCTCTCCCGGCGCTCGCCTAACCGATGGTCTGGCACGTGGCCTTGGAAAGACCGAGGTGCACAAAATAAGGTGGTTTTCATTATAGTGTGCCTCACAAAGGGCAGCATTTATTTTTGTGCCTTGCGCTTAAGCCCTTGAAGGCCATTGCACTATTGCACCTTGAGCTTAAAAAAAACACTTGTTATATTGTGGTAATTCTGTTATCTCTTTATCCTTCCTCCCCATGTACAGCCACAGCCCTTAGCCTTGTTATTGTTTTCCACACTTGAACTTTGGATGCGAGTTTTAGTGATTCTGCTGCTTGAATATGTCTTTGTTCACGAAACACTGTGGAAACGTATGAACGGGAGATCTGCAAGTTCTTTGGAGTTGTGCTTTTATGGGTTTCACAAATTTTGAGTTTATTATTCTTTGTTGTAATATGAAGTAAATGTATTGTCATCATATTCCATGTAAAACCCAGTCCTCTGTACTTGGTATCATAATTGACTCTATTTAGTGTAGTTAGTCTGGCATTGTTTATAATTATTCAGTTAATATTGGTTATTTTGGTATATGTTTTCTTGGGTGACTTGATTTGTTTCTCTTAGCCCCCGTGTTCATCAGAGAAGCCAAGGGGGCCAATAAGATCCATCCTGATCATTGGTCAATAATCTTGTGCCTTTGTTGCAGGTACAAACACATGGGACAGATTTGAACTTCGTGTCCATAAGCGGGTTATTGACCTCTTTAGCTCTGCTGACGTTGTTAAGCAGATCACATCCATCACCATCGAACCGGGTGTTGAGGTTGAAGTCACAATTGCAGATTGATGTGTTTTCCAATATTTCCCGAGTTCTATACTCTGCTCGTAGTTATTTAGAGGTCTATGTACTCTGTGTGTCTGCCCTGCTTCAAATCTGAAATGTTAAGGTTAATGCATTATCATCCATTTTTGTCATAATTTTGAAGTTCATAACTTATTTTGAGAGGAAGATTTTGGCCTGCTGTTATTTCGTTTATATATCTTTGAATTATGTATTTGGATCAGAAGTTAGAATATAACGTAATGTGCTTTTATTTTTAAAATGTGAATGGTCTTTCAAACCTGCCACTCTCATCTAATTGTGTTTCACCTCGTACGCTAAGAACATCGTAGATTGTGAGAATATGGTATGAATTCTTAGAAATGGAATGTTGATTTTGGTCTCCTTGGAATAATTTCTATATTGTGTACACCAC

mRNA sequence

ATCTTCCTCCTCCCTAAATCCTCCAACTGCAGAACCTAGCAGCGGAAGCCGCCCTTGCTCCGGAAGTAAGCAAATATGGCGTATGCAGCGATGAAGCCTACGAAGGCTGGTTTGGAGGATGCACAAGAGCAGATCCACAAGATTAGGATCACTCTTTCGTCGAAGAACGTGAAGAACCTTGAAAAGGTTTGTGCTGATTTGGTTCGGGGTGCCAAGGACAAGAGATTGAGGGTTAAGGGGCCTGTGAGGATGCCAACCAAAGTCCTGCACATCACCACCAGGAAATCTCCCTGCGGTGAAGCCTCTCCCGGCGCTCGCCTAACCGATGGTCTGGCACGTGGCCTTGGAAAGACCGAGGTACAAACACATGGGACAGATTTGAACTTCGTGTCCATAAGCGGGTTATTGACCTCTTTAGCTCTGCTGACGTTGTTAAGCAGATCACATCCATCACCATCGAACCGGGTGTTGAGGTTGAAGTCACAATTGCAGATTGATGTGTTTTCCAATATTTCCCGAGTTCTATACTCTGCTCGTAGTTATTTAGAGGTCTATGTACTCTGTGTGTCTGCCCTGCTTCAAATCTGAAATGTTAAGGTTAATGCATTATCATCCATTTTTGTCATAATTTTGAAGTTCATAACTTATTTTGAGAGGAAGATTTTGGCCTGCTGTTATTTCGTTTATATATCTTTGAATTATGTATTTGGATCAGAAGTTAGAATATAACGTAATGTGCTTTTATTTTTAAAATGTGAATGGTCTTTCAAACCTGCCACTCTCATCTAATTGTGTTTCACCTCGTACGCTAAGAACATCGTAGATTGTGAGAATATGGTATGAATTCTTAGAAATGGAATGTTGATTTTGGTCTCCTTGGAATAATTTCTATATTGTGTACACCAC

Coding sequence (CDS)

ATGGCGTATGCAGCGATGAAGCCTACGAAGGCTGGTTTGGAGGATGCACAAGAGCAGATCCACAAGATTAGGATCACTCTTTCGTCGAAGAACGTGAAGAACCTTGAAAAGGTTTGTGCTGATTTGGTTCGGGGTGCCAAGGACAAGAGATTGAGGGTTAAGGGGCCTGTGAGGATGCCAACCAAAGTCCTGCACATCACCACCAGGAAATCTCCCTGCGGTGAAGCCTCTCCCGGCGCTCGCCTAACCGATGGTCTGGCACGTGGCCTTGGAAAGACCGAGGTACAAACACATGGGACAGATTTGAACTTCGTGTCCATAAGCGGGTTATTGACCTCTTTAGCTCTGCTGACGTTGTTAAGCAGATCACATCCATCACCATCGAACCGGGTGTTGAGGTTGAAGTCACAATTGCAGATTGATGTGTTTTCCAATATTTCCCGAGTTCTATACTCTGCTCGTAGTTATTTAGAGGTCTATGTACTCTGTGTGTCTGCCCTGCTTCAAATCTGA

Homology

[Close]

BLAST of CmoCh15G014470 vs. Swiss-Prot
Match: RS202_ARATH (40S ribosomal protein S20-2 OS=Arabidopsis thaliana GN=RPS20B PE=2 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 3.3e-30
Identity = 67/77 (87.01%), Postives = 69/77 (89.61%), Query Frame = 1


Query: 1  MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
          MAY  MKPTKAGLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMP
Sbjct: 1  MAYEPMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 61 TKVLHITTRKSPCGEAS 78
          TKVL ITTRK+PCGE +
Sbjct: 61 TKVLKITTRKAPCGEGT 77

[Close]

BLAST of CmoCh15G014470 vs. Swiss-Prot
Match: RS201_ARATH (40S ribosomal protein S20-1 OS=Arabidopsis thaliana GN=RPS20A PE=2 SV=2)

HSP 1 Score: 129.8 bits (325), Expect = 2.8e-29
Identity = 65/76 (85.53%), Postives = 68/76 (89.47%), Query Frame = 1


Query: 2  AYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 61
          AY  MKP KAGLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPT
Sbjct: 4  AYQPMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT 63

Query: 62 KVLHITTRKSPCGEAS 78
          KVL ITTRK+PCGE +
Sbjct: 64 KVLKITTRKAPCGEGT 79

[Close]

BLAST of CmoCh15G014470 vs. Swiss-Prot
Match: RS20_ORYSJ (40S ribosomal protein S20 OS=Oryza sativa subsp. japonica GN=RPS20 PE=2 SV=2)

HSP 1 Score: 115.2 bits (287), Expect = 7.2e-25
Identity = 66/120 (55.00%), Postives = 83/120 (69.17%), Query Frame = 1


Query: 1   MAYAA-MKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRM 60
           +AYA  MK  K G E +QE  H+IRITLSSK+VKNLEKVC DLV+GAKDK L+VKGPVRM
Sbjct: 6   VAYAPPMKSGKIGFESSQEVQHRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRM 65

Query: 61  PTKVLHITTRKSPCGEASPGARLTDGLARGLGKTEVQTHGTDLNFVSISGLLTSLALLTL 120
           PTKVLHITTRKSPCGE   G    D       + E++ H   ++ VS + ++  +  +T+
Sbjct: 66  PTKVLHITTRKSPCGE---GTNTWD-------RFEMRVHKRVIDLVSSADVVKQITSITI 115

[Close]

BLAST of CmoCh15G014470 vs. Swiss-Prot
Match: RS20_XENLA (40S ribosomal protein S20 OS=Xenopus laevis GN=rps20 PE=1 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.1e-20
Identity = 50/70 (71.43%), Postives = 60/70 (85.71%), Query Frame = 1


Query: 8  PTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHIT 67
          P KA + D +  IH+IRITL+S+NVK+LEKVCADL+RGAK+K L+VKGPVRMPTK L IT
Sbjct: 6  PGKAPV-DQEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRIT 65

Query: 68 TRKSPCGEAS 78
          TRK+PCGE S
Sbjct: 66 TRKTPCGEGS 74

[Close]

BLAST of CmoCh15G014470 vs. Swiss-Prot
Match: RS20_BOVIN (40S ribosomal protein S20 OS=Bos taurus GN=RPS20 PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.4e-20
Identity = 49/73 (67.12%), Postives = 59/73 (80.82%), Query Frame = 1


Query: 5  AMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVL 64
          A K T     + +  IH+IRITL+S+NVK+LEKVCADL+RGAK+K L+VKGPVRMPTK L
Sbjct: 2  AFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTL 61

Query: 65 HITTRKSPCGEAS 78
           ITTRK+PCGE S
Sbjct: 62 RITTRKTPCGEGS 74

[Close]

BLAST of CmoCh15G014470 vs. TrEMBL
Match: A0A151QQ46_CAJCA (40S ribosomal protein S20-2 OS=Cajanus cajan GN=KK1_046906 PE=3 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 4.3e-32
Identity = 72/77 (93.51%), Postives = 75/77 (97.40%), Query Frame = 1


Query: 1  MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
          MAYAAMKPTK GLE++QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1  MAYAAMKPTKPGLEESQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61 TKVLHITTRKSPCGEAS 78
          TKVLHITTRKSPCGE +
Sbjct: 61 TKVLHITTRKSPCGEGT 77

[Close]

BLAST of CmoCh15G014470 vs. TrEMBL
Match: A0A0D2S4U3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G008300 PE=3 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 4.3e-32
Identity = 72/77 (93.51%), Postives = 75/77 (97.40%), Query Frame = 1


Query: 1  MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
          MAYAAMKPTK GLE++QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1  MAYAAMKPTKPGLEESQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61 TKVLHITTRKSPCGEAS 78
          TKVLHITTRKSPCGE +
Sbjct: 61 TKVLHITTRKSPCGEGT 77

[Close]

BLAST of CmoCh15G014470 vs. TrEMBL
Match: A0A0A0KL82_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G171160 PE=3 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 4.3e-32
Identity = 73/77 (94.81%), Postives = 75/77 (97.40%), Query Frame = 1


Query: 1  MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
          MAYAAMKPTK GLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1  MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61 TKVLHITTRKSPCGEAS 78
          TKVL+ITTRKSPCGE +
Sbjct: 61 TKVLNITTRKSPCGEGT 77

[Close]

BLAST of CmoCh15G014470 vs. TrEMBL
Match: V4S3T5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006225mg PE=3 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 5.6e-32
Identity = 72/77 (93.51%), Postives = 74/77 (96.10%), Query Frame = 1


Query: 1  MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
          MAYAAMKPTK GLE+AQEQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMP
Sbjct: 1  MAYAAMKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 61 TKVLHITTRKSPCGEAS 78
          TKVLHITTRKSPCGE +
Sbjct: 61 TKVLHITTRKSPCGEGT 77

[Close]

BLAST of CmoCh15G014470 vs. TrEMBL
Match: A0A067FGY6_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0334821mg PE=3 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 5.6e-32
Identity = 72/77 (93.51%), Postives = 74/77 (96.10%), Query Frame = 1


Query: 1  MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
          MAYAAMKPTK GLE+AQEQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMP
Sbjct: 1  MAYAAMKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 61 TKVLHITTRKSPCGEAS 78
          TKVLHITTRKSPCGE +
Sbjct: 61 TKVLHITTRKSPCGEGT 77

[Close]

BLAST of CmoCh15G014470 vs. TAIR10
Match: AT3G47370.2 (AT3G47370.2 Ribosomal protein S10p/S20e family protein)

HSP 1 Score: 132.9 bits (333), Expect = 1.9e-31
Identity = 67/77 (87.01%), Postives = 69/77 (89.61%), Query Frame = 1


Query: 1  MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
          MAY  MKPTKAGLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMP
Sbjct: 1  MAYEPMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 61 TKVLHITTRKSPCGEAS 78
          TKVL ITTRK+PCGE +
Sbjct: 61 TKVLKITTRKAPCGEGT 77

[Close]

BLAST of CmoCh15G014470 vs. TAIR10
Match: AT3G45030.1 (AT3G45030.1 Ribosomal protein S10p/S20e family protein)

HSP 1 Score: 129.8 bits (325), Expect = 1.6e-30
Identity = 65/76 (85.53%), Postives = 68/76 (89.47%), Query Frame = 1


Query: 2  AYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 61
          AY  MKP KAGLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPT
Sbjct: 4  AYQPMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT 63

Query: 62 KVLHITTRKSPCGEAS 78
          KVL ITTRK+PCGE +
Sbjct: 64 KVLKITTRKAPCGEGT 79

[Close]

BLAST of CmoCh15G014470 vs. TAIR10
Match: AT5G62300.1 (AT5G62300.1 Ribosomal protein S10p/S20e family protein)

HSP 1 Score: 129.8 bits (325), Expect = 1.6e-30
Identity = 65/76 (85.53%), Postives = 68/76 (89.47%), Query Frame = 1


Query: 2  AYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 61
          AY  MKP KAGLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPT
Sbjct: 4  AYQPMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT 63

Query: 62 KVLHITTRKSPCGEAS 78
          KVL ITTRK+PCGE +
Sbjct: 64 KVLKITTRKAPCGEGT 79

[Close]

BLAST of CmoCh15G014470 vs. NCBI nr
Match: gi|659073124|ref|XP_008467267.1| (PREDICTED: 40S ribosomal protein S20-2 [Cucumis melo])

HSP 1 Score: 148.7 bits (374), Expect = 9.4e-33
Identity = 74/77 (96.10%), Postives = 75/77 (97.40%), Query Frame = 1


Query: 1  MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
          MAYAAMKPTK GLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1  MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61 TKVLHITTRKSPCGEAS 78
          TKVLHITTRKSPCGE +
Sbjct: 61 TKVLHITTRKSPCGEGT 77

[Close]

BLAST of CmoCh15G014470 vs. NCBI nr
Match: gi|659077257|ref|XP_008439109.1| (PREDICTED: 40S ribosomal protein S20-2-like [Cucumis melo])

HSP 1 Score: 147.1 bits (370), Expect = 2.7e-32
Identity = 73/77 (94.81%), Postives = 74/77 (96.10%), Query Frame = 1


Query: 1  MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
          MAYAAMKPTK GLED QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1  MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61 TKVLHITTRKSPCGEAS 78
          TKVLHITTRKSPCGE +
Sbjct: 61 TKVLHITTRKSPCGEGT 77

[Close]

BLAST of CmoCh15G014470 vs. NCBI nr
Match: gi|449451803|ref|XP_004143650.1| (PREDICTED: 40S ribosomal protein S20-2 [Cucumis sativus])

HSP 1 Score: 146.0 bits (367), Expect = 6.1e-32
Identity = 73/77 (94.81%), Postives = 75/77 (97.40%), Query Frame = 1


Query: 1  MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
          MAYAAMKPTK GLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1  MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61 TKVLHITTRKSPCGEAS 78
          TKVL+ITTRKSPCGE +
Sbjct: 61 TKVLNITTRKSPCGEGT 77

[Close]

BLAST of CmoCh15G014470 vs. NCBI nr
Match: gi|747059828|ref|XP_011076314.1| (PREDICTED: 40S ribosomal protein S20-2 [Sesamum indicum])

HSP 1 Score: 146.0 bits (367), Expect = 6.1e-32
Identity = 72/77 (93.51%), Postives = 75/77 (97.40%), Query Frame = 1


Query: 1   MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTK GLE++QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 73  MAYAAMKPTKPGLEESQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 132

Query: 61  TKVLHITTRKSPCGEAS 78
           TKVLHITTRKSPCGE +
Sbjct: 133 TKVLHITTRKSPCGEGT 149

[Close]

BLAST of CmoCh15G014470 vs. NCBI nr
Match: gi|1012319354|gb|KYP32427.1| (40S ribosomal protein S20-2 [Cajanus cajan])

HSP 1 Score: 146.0 bits (367), Expect = 6.1e-32
Identity = 72/77 (93.51%), Postives = 75/77 (97.40%), Query Frame = 1


Query: 1  MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
          MAYAAMKPTK GLE++QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1  MAYAAMKPTKPGLEESQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61 TKVLHITTRKSPCGEAS 78
          TKVLHITTRKSPCGE +
Sbjct: 61 TKVLHITTRKSPCGEGT 77

The following BLAST results are available for this feature:

BLAST of CmoCh15G014470 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RS202_ARATH	3.3e-30	87.01	40S ribosomal protein S20-2 OS=Arabidopsis thaliana GN=RPS20B PE=2 SV=1	[more]
RS201_ARATH	2.8e-29	85.53	40S ribosomal protein S20-1 OS=Arabidopsis thaliana GN=RPS20A PE=2 SV=2	[more]
RS20_ORYSJ	7.2e-25	55.00	40S ribosomal protein S20 OS=Oryza sativa subsp. japonica GN=RPS20 PE=2 SV=2	[more]
RS20_XENLA	1.1e-20	71.43	40S ribosomal protein S20 OS=Xenopus laevis GN=rps20 PE=1 SV=1	[more]
RS20_BOVIN	2.4e-20	67.12	40S ribosomal protein S20 OS=Bos taurus GN=RPS20 PE=3 SV=1	[more]

BLAST of CmoCh15G014470 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A151QQ46_CAJCA	4.3e-32	93.51	40S ribosomal protein S20-2 OS=Cajanus cajan GN=KK1_046906 PE=3 SV=1	[more]
A0A0D2S4U3_GOSRA	4.3e-32	93.51	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G008300 PE=3 SV=1	[more]
A0A0A0KL82_CUCSA	4.3e-32	94.81	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G171160 PE=3 SV=1	[more]
V4S3T5_9ROSI	5.6e-32	93.51	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006225mg PE=3 SV=1	[more]
A0A067FGY6_CITSI	5.6e-32	93.51	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0334821mg PE=3 ...	[more]

BLAST of CmoCh15G014470 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G47370.2	1.9e-31	87.01	Ribosomal protein S10p/S20e family protein	[more]
AT3G45030.1	1.6e-30	85.53	Ribosomal protein S10p/S20e family protein	[more]
AT5G62300.1	1.6e-30	85.53	Ribosomal protein S10p/S20e family protein	[more]

BLAST of CmoCh15G014470 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659073124\|ref\|XP_008467267.1\|	9.4e-33	96.10	PREDICTED: 40S ribosomal protein S20-2 [Cucumis melo]	[more]
gi\|659077257\|ref\|XP_008439109.1\|	2.7e-32	94.81	PREDICTED: 40S ribosomal protein S20-2-like [Cucumis melo]	[more]
gi\|449451803\|ref\|XP_004143650.1\|	6.1e-32	94.81	PREDICTED: 40S ribosomal protein S20-2 [Cucumis sativus]	[more]
gi\|747059828\|ref\|XP_011076314.1\|	6.1e-32	93.51	PREDICTED: 40S ribosomal protein S20-2 [Sesamum indicum]	[more]
gi\|1012319354\|gb\|KYP32427.1\|	6.1e-32	93.51	40S ribosomal protein S20-2 [Cajanus cajan]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001848	Ribosomal_S10
IPR018268	Ribosomal_S10_CS
IPR027486	Ribosomal_S10_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome
GO:0003723	RNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh15G014470.1	CmoCh15G014470.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001848	Ribosomal protein S10	PRINTS	PR00971	RIBOSOMALS10	coord: 22..35 score: 9.4E-6coord: 57..72 score: 9.
IPR001848	Ribosomal protein S10	HAMAP	MF_00508	Ribosomal_S10	coord: 20..144 score: 11
IPR001848	Ribosomal protein S10	PANTHER	PTHR11700	30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER	coord: 1..75 score: 9.4
IPR018268	Ribosomal protein S10, conserved site	PROSITE	PS00361	RIBOSOMAL_S10	coord: 46..61 scor
IPR027486	Ribosomal protein S10 domain	GENE3D	G3DSA:3.30.70.600		coord: 20..75 score: 1.2
IPR027486	Ribosomal protein S10 domain	PFAM	PF00338	Ribosomal_S10	coord: 24..75 score: 3.9
IPR027486	Ribosomal protein S10 domain	SMART	SM01403	Ribosomal_S10_2	coord: 24..105 score: 6.
IPR027486	Ribosomal protein S10 domain	unknown	SSF54999	Ribosomal protein S10	coord: 22..75 score: 3.66
None	No IPR available	PANTHER	PTHR11700:SF10	SUBFAMILY NOT NAMED	coord: 1..75 score: 9.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh15G014470	Cucsa.115650	Cucumber (Gy14) v1	cgycmoB0277
CmoCh15G014470	CmaCh15G013850	Cucurbita maxima (Rimu)	cmacmoB287
CmoCh15G014470	CmaCh02G010140	Cucurbita maxima (Rimu)	cmacmoB580
CmoCh15G014470	Cla003569	Watermelon (97103) v1	cmowmB270
CmoCh15G014470	Csa5G171160	Cucumber (Chinese Long) v2	cmocuB278
CmoCh15G014470	MELO3C005411	Melon (DHL92) v3.5.1	cmomeB244
CmoCh15G014470	ClCG01G005170	Watermelon (Charleston Gray)	cmowcgB244
CmoCh15G014470	CSPI05G08050	Wild cucumber (PI 183967)	cmocpiB287
CmoCh15G014470	Lsi09G005470	Bottle gourd (USVL1VR-Ls)	cmolsiB248
CmoCh15G014470	Cp4.1LG13g00820	Cucurbita pepo (Zucchini)	cmocpeB269
CmoCh15G014470	Cp4.1LG05g07130	Cucurbita pepo (Zucchini)	cmocpeB295
CmoCh15G014470	MELO3C005411.2	Melon (DHL92) v3.6.1	cmomedB277
CmoCh15G014470	CsaV3_5G005450	Cucumber (Chinese Long) v3	cmocucB0336
CmoCh15G014470	Cla97C01G005400	Watermelon (97103) v2	cmowmbB267
CmoCh15G014470	Bhi12G000515	Wax gourd	cmowgoB0362
CmoCh15G014470	CsGy5G005440	Cucumber (Gy14) v2	cgybcmoB573
CmoCh15G014470	Carg20839	Silver-seed gourd	carcmoB1387
CmoCh15G014470	Carg08463	Silver-seed gourd	carcmoB0965

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh15G014470	CmoCh02G010290	Cucurbita moschata (Rifu)	cmocmoB247

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh15G014470	Wax gourd	cmowgoB0365