MELO3C005411 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C005411
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	30S ribosomal protein S10
Location	chr9 : 20223721 .. 20225640 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTGATATTAATACAAAAAAACCCTACCTTTCTTCTTCCCACCTCTTATAATCCTCCCCAGCTGAAATAACCTACCTCAGCCGTACCCGCCGCCCTTTGCTCCGGTACTCTTCTCCACCCCCATTTCCGTTCCCCTTCCCCTTCCCCTTCCCATGCTGTTTACCTTACTTCTTCCTCTTAGTTTTGGAATTTTTGTTTTCAGGTAGTAAGTAAGTAAGCAAACATGGCGTATGCAGCAATGAAGCCTACGAAGCCTGGTTTGGAGGACGCACAAGAGCAGATCCACAAGATTAGGATTACTCTTTCCTCCAAGAATGTGAAGAACCTTGAAAAGGGTATCTCCTTGTACCTCTATTTTGAAGCAAATTGGAATTTTCTTTTATCTAATGTTGCATTCGAACTCATATGTTGTTTTTTTTTTTTTTTTTGTAAATTGTTTCTGAAATATAGTGGTTCTTCCTCATTTGCTTTGTGATTGCTGTTGTTGTTTGTAATTCGTTGGCTTTTTCACTTTTCACGTTCTTCTCGATTTTTAACGTGTTAGTTATTGCTTTGTTATTTATTTTTCAAATGAACTTCTGATGGTTGCTCTGGGAGAGTCATCCATGATTCACGAATGCGGTCGAAGCCTTTTGATGGGCTTTGACTTAACTCAACAACAATGGTTTTTTGTGGCCTTAATTTCTGTGTTTCTACAAATAATTGAAAATTTATTTGTTGGTGCCTTCAGTTCAATTCTTATGGTTTACTTTGTTTTTTAAATCAACAGTTTGTGCTGATTTGGTTCGGGGTGCCAAAGACAAGAGACTGAGGGTTAAGGGACCTGTGAGGATGCCAACTAAAGTCCTCCACATCACCACAAGGAAATCTCCCTGCGGTGAAGGTACTTGTGAATCAATGCCTTATTTTAAGATTTAACTGTAAGCCTGATTATGGAATCCTCTATTTGATTGTTAGTAATTGTGAATCAATGCCTTATTTTAAGATTTAACTGTAAGCCTGATTATGGAATCCTCTATTTGATTGTTAGTAATTGTTACCCTGGATCAATCCCTCAACTGATTTTTCCCTTACATCTCTCTTTTCCCATCATCCATTTGTATTTATATATTTGCCTATCTGCGATTATCATTGGTGGTTTTAGTTAAATCTTCATGCATCATGGTATGTTGATCTTGACACCTTGTGTTTTAGTGTTTCAATCCTGTTATCTCCGTATCCTTCCTCCGTGTGTACAACCCTTAGACCGGCTCATTGCTATTCATAAATTTGTGTCCATTGTCAAAATAGTGTTAAAACTGAATCAATATTTGACTCTTCAATTCTAGAAAATTGTTTGGATTCGTACTTTGACGAGTTTCCCCACAAAATTTTTAGTTTATCATTCATATTCACATTAATATTCAACAGAAAATTGGTTAAGGATCTTATTACTTTATGTTCCAGGTACCAACACATGGGACAGATTTGAACTTCGTGTCCACAAACGGGTCATCGACCTCTTTAGCTCTGCTGACGTTGTTAAGCAGATCACCTCGATCACCATCGAACCCGGTGTTGAGGTTGAAGTCACAATTGCCGATTGATGTGTCCCATATTTCTGAAGTTCTTAAATCCACTTCATCGTAGTTATCTAGAGTTCTATATACTCTGTGTGCCTGCGCTATTTCAATCTCAAATGTTAAGGTTAATGCGTTATCCATTTTTGTCATAATTTTGAAGTTCATAACTAATTCCGAGAGCAAAATTTTTGTCTCCTGTCATTTCGTTTTGGAATTTTTTTTTTTTTTTAAACTTAGATGAAAAGTTAGAATATAATTCCATGATCTGTATTCTGCTTTTATGCCCCTTGTGTTTTAATGTGGATGGTCTTTCCATATCCATTTATTTTGATTGCCAATGCTTCGATTTGTATTATGC

mRNA sequence

ACTGATATTAATACAAAAAAACCCTACCTTTCTTCTTCCCACCTCTTATAATCCTCCCCAGCTGAAATAACCTACCTCAGCCGTACCCGCCGCCCTTTGCTCCGGTAGTAAGTAAGTAAGCAAACATGGCGTATGCAGCAATGAAGCCTACGAAGCCTGGTTTGGAGGACGCACAAGAGCAGATCCACAAGATTAGGATTACTCTTTCCTCCAAGAATGTGAAGAACCTTGAAAAGGTTTGTGCTGATTTGGTTCGGGGTGCCAAAGACAAGAGACTGAGGGTTAAGGGACCTGTGAGGATGCCAACTAAAGTCCTCCACATCACCACAAGGAAATCTCCCTGCGGTGAAGGTACCAACACATGGGACAGATTTGAACTTCGTGTCCACAAACGGGTCATCGACCTCTTTAGCTCTGCTGACGTTGTTAAGCAGATCACCTCGATCACCATCGAACCCGGTGTTGAGGTTGAAGTCACAATTGCCGATTGATGTGTCCCATATTTCTGAAGTTCTTAAATCCACTTCATCGTAGTTATCTAGAGTTCTATATACTCTGTGTGCCTGCGCTATTTCAATCTCAAATGTTAAGGTTAATGCGTTATCCATTTTTGTCATAATTTTGAAGTTCATAACTAATTCCGAGAGCAAAATTTTTGTCTCCTGTCATTTCGTTTTGGAATTTTTTTTTTTTTTTAAACTTAGATGAAAAGTTAGAATATAATTCCATGATCTGTATTCTGCTTTTATGCCCCTTGTGTTTTAATGTGGATGGTCTTTCCATATCCATTTATTTTGATTGCCAATGCTTCGATTTGTATTATGC

Coding sequence (CDS)

ATGGCGTATGCAGCAATGAAGCCTACGAAGCCTGGTTTGGAGGACGCACAAGAGCAGATCCACAAGATTAGGATTACTCTTTCCTCCAAGAATGTGAAGAACCTTGAAAAGGTTTGTGCTGATTTGGTTCGGGGTGCCAAAGACAAGAGACTGAGGGTTAAGGGACCTGTGAGGATGCCAACTAAAGTCCTCCACATCACCACAAGGAAATCTCCCTGCGGTGAAGGTACCAACACATGGGACAGATTTGAACTTCGTGTCCACAAACGGGTCATCGACCTCTTTAGCTCTGCTGACGTTGTTAAGCAGATCACCTCGATCACCATCGAACCCGGTGTTGAGGTTGAAGTCACAATTGCCGATTGA

Homology

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BLAST of MELO3C005411 vs. Swiss-Prot
Match: RS202_ARATH (40S ribosomal protein S20-2 OS=Arabidopsis thaliana GN=RPS20B PE=2 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 2.5e-56
Identity = 111/121 (91.74%), Postives = 110/121 (90.91%), Query Frame = 1


Query: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAY  MKPTK GLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYEPMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

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BLAST of MELO3C005411 vs. Swiss-Prot
Match: RS201_ARATH (40S ribosomal protein S20-1 OS=Arabidopsis thaliana GN=RPS20A PE=2 SV=2)

HSP 1 Score: 216.1 bits (549), Expect = 2.2e-55
Identity = 109/120 (90.83%), Postives = 109/120 (90.83%), Query Frame = 1


Query: 2   AYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 61
           AY  MKP K GLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPT
Sbjct: 4   AYQPMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT 63

Query: 62  KVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 121
           KVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIAD
Sbjct: 64  KVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 123

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BLAST of MELO3C005411 vs. Swiss-Prot
Match: RS20_ORYSJ (40S ribosomal protein S20 OS=Oryza sativa subsp. japonica GN=RPS20 PE=2 SV=2)

HSP 1 Score: 199.9 bits (507), Expect = 1.6e-50
Identity = 102/122 (83.61%), Postives = 108/122 (88.52%), Query Frame = 1


Query: 1   MAYAA-MKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRM 60
           +AYA  MK  K G E +QE  H+IRITLSSK+VKNLEKVC DLV+GAKDK L+VKGPVRM
Sbjct: 6   VAYAPPMKSGKIGFESSQEVQHRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRM 65

Query: 61  PTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTI 120
           PTKVLHITTRKSPCGEGTNTWDRFE+RVHKRVIDL SSADVVKQITSITIEPGVEVEVTI
Sbjct: 66  PTKVLHITTRKSPCGEGTNTWDRFEMRVHKRVIDLVSSADVVKQITSITIEPGVEVEVTI 125

Query: 121 AD 122
           +D
Sbjct: 126 SD 127

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BLAST of MELO3C005411 vs. Swiss-Prot
Match: RS20_XENLA (40S ribosomal protein S20 OS=Xenopus laevis GN=rps20 PE=1 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 2.1e-42
Identity = 80/107 (74.77%), Postives = 96/107 (89.72%), Query Frame = 1


Query: 15  DAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCG 74
           D +  IH+IRITL+S+NVK+LEKVCADL+RGAK+K L+VKGPVRMPTK L ITTRK+PCG
Sbjct: 12  DQEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCG 71

Query: 75  EGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 122
           EG+ TWDRF++R+HKR+IDL S +++VKQITSI+IEPGVEVEVTIAD
Sbjct: 72  EGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIAD 118

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BLAST of MELO3C005411 vs. Swiss-Prot
Match: RS20_MOUSE (40S ribosomal protein S20 OS=Mus musculus GN=Rps20 PE=1 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 2.7e-42
Identity = 82/117 (70.09%), Postives = 99/117 (84.62%), Query Frame = 1


Query: 5   AMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVL 64
           A K T     + +  IH+IRITL+S+NVK+LEKVCADL+RGAK+K L+VKGPVRMPTK L
Sbjct: 2   AFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTL 61

Query: 65  HITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 122
            ITTRK+PCGEG+ TWDRF++R+HKR+IDL S +++VKQITSI+IEPGVEVEVTIAD
Sbjct: 62  RITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIAD 118

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BLAST of MELO3C005411 vs. TrEMBL
Match: A0A0A0KL82_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G171160 PE=3 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 2.6e-60
Identity = 120/121 (99.17%), Postives = 121/121 (100.00%), Query Frame = 1


Query: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVL+ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

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BLAST of MELO3C005411 vs. TrEMBL
Match: A0A0D2S4U3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G008300 PE=3 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 1.0e-59
Identity = 118/121 (97.52%), Postives = 120/121 (99.17%), Query Frame = 1


Query: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLE++QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEESQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

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BLAST of MELO3C005411 vs. TrEMBL
Match: V4S3T5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006225mg PE=3 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 1.3e-59
Identity = 118/121 (97.52%), Postives = 119/121 (98.35%), Query Frame = 1


Query: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLE+AQEQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of MELO3C005411 vs. TrEMBL
Match: A0A0D2NMN0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G064700 PE=3 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 1.7e-59
Identity = 118/121 (97.52%), Postives = 119/121 (98.35%), Query Frame = 1


Query: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLE+ QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEEPQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of MELO3C005411 vs. TrEMBL
Match: A0A0B0N2B4_GOSAR (40S ribosomal S20-2-like protein OS=Gossypium arboreum GN=F383_33121 PE=3 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 1.7e-59
Identity = 118/121 (97.52%), Postives = 119/121 (98.35%), Query Frame = 1


Query: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLE+ QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEEPQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of MELO3C005411 vs. TAIR10
Match: AT3G47370.2 (AT3G47370.2 Ribosomal protein S10p/S20e family protein)

HSP 1 Score: 219.2 bits (557), Expect = 1.4e-57
Identity = 111/121 (91.74%), Postives = 110/121 (90.91%), Query Frame = 1


Query: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAY  MKPTK GLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYEPMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of MELO3C005411 vs. TAIR10
Match: AT3G45030.1 (AT3G45030.1 Ribosomal protein S10p/S20e family protein)

HSP 1 Score: 216.1 bits (549), Expect = 1.2e-56
Identity = 109/120 (90.83%), Postives = 109/120 (90.83%), Query Frame = 1


Query: 2   AYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 61
           AY  MKP K GLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPT
Sbjct: 4   AYQPMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT 63

Query: 62  KVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 121
           KVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIAD
Sbjct: 64  KVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 123

[Close]

BLAST of MELO3C005411 vs. TAIR10
Match: AT5G62300.1 (AT5G62300.1 Ribosomal protein S10p/S20e family protein)

HSP 1 Score: 216.1 bits (549), Expect = 1.2e-56
Identity = 109/120 (90.83%), Postives = 109/120 (90.83%), Query Frame = 1


Query: 2   AYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 61
           AY  MKP K GLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPT
Sbjct: 4   AYQPMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT 63

Query: 62  KVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 121
           KVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIAD
Sbjct: 64  KVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 123

[Close]

BLAST of MELO3C005411 vs. TAIR10
Match: AT3G13120.1 (AT3G13120.1 Ribosomal protein S10p/S20e family protein)

HSP 1 Score: 52.8 bits (125), Expect = 1.8e-07
Identity = 33/99 (33.33%), Postives = 51/99 (51.52%), Query Frame = 1


Query: 22  KIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWD 81
           KIRI L S  V  +E  C  ++  A++   +  GPV +PTK       KSP       + 
Sbjct: 94  KIRIKLRSYWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARF- 153

Query: 82  RFELRVHKRVID-LFSSADVVKQITSITIEPGVEVEVTI 120
            FE+R H+R+ID L+ +A  +  +  + +  GV+VEV +
Sbjct: 154 HFEIRTHQRMIDILYPTAQTIDSLMQLDLPAGVDVEVKL 191

[Close]

BLAST of MELO3C005411 vs. NCBI nr
Match: gi|659073124|ref|XP_008467267.1| (PREDICTED: 40S ribosomal protein S20-2 [Cucumis melo])

HSP 1 Score: 241.9 bits (616), Expect = 5.9e-61
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 1


Query: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of MELO3C005411 vs. NCBI nr
Match: gi|659077257|ref|XP_008439109.1| (PREDICTED: 40S ribosomal protein S20-2-like [Cucumis melo])

HSP 1 Score: 240.4 bits (612), Expect = 1.7e-60
Identity = 120/121 (99.17%), Postives = 120/121 (99.17%), Query Frame = 1


Query: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLED QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of MELO3C005411 vs. NCBI nr
Match: gi|449451803|ref|XP_004143650.1| (PREDICTED: 40S ribosomal protein S20-2 [Cucumis sativus])

HSP 1 Score: 239.2 bits (609), Expect = 3.8e-60
Identity = 120/121 (99.17%), Postives = 121/121 (100.00%), Query Frame = 1


Query: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVL+ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of MELO3C005411 vs. NCBI nr
Match: gi|747078702|ref|XP_011086523.1| (PREDICTED: 40S ribosomal protein S20-2-like [Sesamum indicum])

HSP 1 Score: 237.3 bits (604), Expect = 1.4e-59
Identity = 118/121 (97.52%), Postives = 120/121 (99.17%), Query Frame = 1


Query: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLE++QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEESQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of MELO3C005411 vs. NCBI nr
Match: gi|747059828|ref|XP_011076314.1| (PREDICTED: 40S ribosomal protein S20-2 [Sesamum indicum])

HSP 1 Score: 237.3 bits (604), Expect = 1.4e-59
Identity = 118/121 (97.52%), Postives = 120/121 (99.17%), Query Frame = 1


Query: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLE++QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 73  MAYAAMKPTKPGLEESQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 132

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 133 TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 192

Query: 121 D 122
           D
Sbjct: 193 D 193

The following BLAST results are available for this feature:

BLAST of MELO3C005411 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RS202_ARATH	2.5e-56	91.74	40S ribosomal protein S20-2 OS=Arabidopsis thaliana GN=RPS20B PE=2 SV=1	[more]
RS201_ARATH	2.2e-55	90.83	40S ribosomal protein S20-1 OS=Arabidopsis thaliana GN=RPS20A PE=2 SV=2	[more]
RS20_ORYSJ	1.6e-50	83.61	40S ribosomal protein S20 OS=Oryza sativa subsp. japonica GN=RPS20 PE=2 SV=2	[more]
RS20_XENLA	2.1e-42	74.77	40S ribosomal protein S20 OS=Xenopus laevis GN=rps20 PE=1 SV=1	[more]
RS20_MOUSE	2.7e-42	70.09	40S ribosomal protein S20 OS=Mus musculus GN=Rps20 PE=1 SV=1	[more]

BLAST of MELO3C005411 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KL82_CUCSA	2.6e-60	99.17	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G171160 PE=3 SV=1	[more]
A0A0D2S4U3_GOSRA	1.0e-59	97.52	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G008300 PE=3 SV=1	[more]
V4S3T5_9ROSI	1.3e-59	97.52	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006225mg PE=3 SV=1	[more]
A0A0D2NMN0_GOSRA	1.7e-59	97.52	Uncharacterized protein OS=Gossypium raimondii GN=B456_006G064700 PE=3 SV=1	[more]
A0A0B0N2B4_GOSAR	1.7e-59	97.52	40S ribosomal S20-2-like protein OS=Gossypium arboreum GN=F383_33121 PE=3 SV=1	[more]

BLAST of MELO3C005411 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G47370.2	1.4e-57	91.74	Ribosomal protein S10p/S20e family protein	[more]
AT3G45030.1	1.2e-56	90.83	Ribosomal protein S10p/S20e family protein	[more]
AT5G62300.1	1.2e-56	90.83	Ribosomal protein S10p/S20e family protein	[more]
AT3G13120.1	1.8e-07	33.33	Ribosomal protein S10p/S20e family protein	[more]

BLAST of MELO3C005411 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659073124\|ref\|XP_008467267.1\|	5.9e-61	100.00	PREDICTED: 40S ribosomal protein S20-2 [Cucumis melo]	[more]
gi\|659077257\|ref\|XP_008439109.1\|	1.7e-60	99.17	PREDICTED: 40S ribosomal protein S20-2-like [Cucumis melo]	[more]
gi\|449451803\|ref\|XP_004143650.1\|	3.8e-60	99.17	PREDICTED: 40S ribosomal protein S20-2 [Cucumis sativus]	[more]
gi\|747078702\|ref\|XP_011086523.1\|	1.4e-59	97.52	PREDICTED: 40S ribosomal protein S20-2-like [Sesamum indicum]	[more]
gi\|747059828\|ref\|XP_011076314.1\|	1.4e-59	97.52	PREDICTED: 40S ribosomal protein S20-2 [Sesamum indicum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001848	Ribosomal_S10
IPR005729	Ribosomal_S10_euk/arc
IPR018268	Ribosomal_S10_CS
IPR027486	Ribosomal_S10_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome
GO:0003723	RNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0015935	small ribosomal subunit
GO:0005622	intracellular

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
cellular_component	GO:0022627	cytosolic small ribosomal subunit
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU45409	melon EST collection version 4.0	transcribed_cluster
MU67240	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C005411T3	MELO3C005411T3	mRNA
MELO3C005411T2	MELO3C005411T2	mRNA
MELO3C005411T1	MELO3C005411T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU45409	MU45409	transcribed_cluster
MU67240	MU67240	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C005411	Csa5G171160	Cucumber (Chinese Long) v2	cumeB359
MELO3C005411	Cla003569	Watermelon (97103) v1	mewmB024
MELO3C005411	ClCG01G005170	Watermelon (Charleston Gray)	mewcgB019
MELO3C005411	Cla97C01G005400	Watermelon (97103) v2	mewmbB009
MELO3C005411	Bhi12G000515	Wax gourd	mewgoB016
MELO3C005411	CSPI05G08050	Wild cucumber (PI 183967)	cpimeB351
MELO3C005411	Cucsa.115650	Cucumber (Gy14) v1	cgymeB167
MELO3C005411	CmaCh15G013850	Cucurbita maxima (Rimu)	cmameB256
MELO3C005411	CmaCh02G010140	Cucurbita maxima (Rimu)	cmameB531
MELO3C005411	CmoCh02G010290	Cucurbita moschata (Rifu)	cmomeB520
MELO3C005411	CmoCh15G014470	Cucurbita moschata (Rifu)	cmomeB244
MELO3C005411	Lsi09G005470	Bottle gourd (USVL1VR-Ls)	lsimeB013
MELO3C005411	Cp4.1LG13g00820	Cucurbita pepo (Zucchini)	cpemeB147
MELO3C005411	Cp4.1LG05g07130	Cucurbita pepo (Zucchini)	cpemeB648
MELO3C005411	CsGy5G005440	Cucumber (Gy14) v2	cgybmeB301
MELO3C005411	Carg20839	Silver-seed gourd	carmeB1002
MELO3C005411	Carg08463	Silver-seed gourd	carmeB0705
MELO3C005411	CsaV3_5G005450	Cucumber (Chinese Long) v3	cucmeB360

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None