Cucsa.115650 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.115650
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	40S ribosomal protein S20
Location	scaffold00988 : 236885 .. 238722 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAACCCTACCCTCCTCTTATAATCTTCCATAAAAACCTAGCTGCTCAGCCGTAGCCGCCCTTCGCTCCGGTAATCTTCTCCAACACTTCCTTCCCCCTTTTCATGGTGTGGTGTTTCCCGTATTCTTCTTGCATCTGATTCTCTTAGTGTTGGATTTTTTGTTTTCAGGTAGTAAGTAAGCAAACATGGCGTATGCAGCAATGAAGCCTACGAAGCCTGGTTTGGAGGACGCACAAGAGCAGATCCACAAGATTAGGATCACTCTTTCCTCCAAGAATGTGAAGAACCTTGAAAAGGGTATCTCCTTATATCTCTCTTTTGAAGCAAATTGGATTTTTTTAGAGCTAATATTGCATTTGAACTCATATGTTGTTTGTCTCTTGGTTTTGCTTTTTTCTTTTGTAAATTGTTTCTGAAATGTATTGATTCTTCCTCACTTGCTTTGTGACTGCTGTTGTCGTTTGTAAATCGTTGGCTTTTTCACTGTTCATGTTCTTCTCGATTTTTAACTTGTTAGTTATTGCTGAAATGAACTTAGAGCATCCATGGGGGGCTTTGACTTTACACAACAACAATTTTTCTTGCCCTTAATTTCTGTGTTTCTACAAATAATTGAACATTTATTTGTTGGTGCCTTCAGTTCAATTCTTATGGTTTACTTTGTTTTTTAAACCAACAGTTTGTGCTGATTTGGTTCGGGGTGCCAAAGATAAGAGACTGAGGGTCAAAGGACCTGTGAGGATGCCAACTAAAGTCCTGAACATCACCACAAGGAAATCTCCCTGCGGTGAAGGTACTTTTGAATCAATGCCTTATTTTAAGATTAACTGCAAACCTGGTTATGGAATCCTCCATCTGATTGTTAGTAATTGCTACCCTGGATCAATCCCTCAACTGATTTTTCCCCCATATCTCTCTTTCCCCATCATCCATTTGTATTTATATATTTGCAGGCATCTGCGAATATCATTGCTGTTTCTAGTCAAATATTCATGCATCATGCATCATGTCAAATATCATTGATGATATGTTGATCTTCACACCTAGTGTCTTAGTGTTTTTAATCCTGTTATCTTCGTATCCCTCCTCCGTGTGTACAACTCTTAGACCGGTTCATTGCTATTCATACTTAACTTTGGATGGGTAGCTTTGGTGATTCTGCTCCATGAATTCGTCTTTATTATCAAAGTAGGGTCAAAACTGAATCATTGTTTGACTCTTCAAGTATAGAAAATTGTCTTTGGATTCGTACTTTGACGAGTTTCCCTACAGAATTTTTAGTTTATTATTCATATTCACATTAATATTCATCAGAAAATTGGTCAAGGATCTTATTACTTTATGTTCCAGGTACCAACACATGGGACAGATTTGAACTTCGTGTCCACAAGCGAGTCATCGACCTCTTTAGCTCTGCTGACGTTGTTAAGCAGATCACCTCGATCACCATCGAACCTGGTGTTGAGGTTGAAGTCACAATTGCCGATTGATGTGTCCCATATTTCTGAAGTTCTTAAATCCACTTCGTAGTTATCTAGAGTTCTATGTACTCTGTGTGCCTGCCCTGTTTCAATCTCAAATGTTAAGGTTAATGCGTTATCCATTTTTGTCATAATTTTGAAGTTCATAACTAATTTCGAGAGCAAAATTTTTGTTTCCTGTCATTTCGTTTTGAAGTTTTTTTTTTACTTAGATGAAAAGTTAGAATATAATTCGATGATCTGTATTCTGCTTTTATATCCCTTATGTTTAATGTGGATGGTCTTTTCATATCCATTTGGTTTAATGTGTGGGCTTAGATTATTACTTTAATAGTTAGATTTATTTTGATAGCCAA

mRNA sequence

AAAACCCTACCCTCCTCTTATAATCTTCCATAAAAACCTAGCTGCTCAGCCGTAGCCGCCCTTCGCTCCGGTAGTAAGTAAGCAAACATGGCGTATGCAGCAATGAAGCCTACGAAGCCTGGTTTGGAGGACGCACAAGAGCAGATCCACAAGATTAGGATCACTCTTTCCTCCAAGAATGTGAAGAACCTTGAAAAGGATAAGAGACTGAGGGTCAAAGGACCTGTGAGGATGCCAACTAAAGTCCTGAACATCACCACAAGGAAATCTCCCTGCGGTGAAGGTACCAACACATGGGACAGATTTGAACTTCGTGTCCACAAGCGAGTCATCGACCTCTTTAGCTCTGCTGACGTTGTTAAGCAGATCACCTCGATCACCATCGAACCTGGTGTTGAGGTTGAAGTCACAATTGCCGATTGATGTGTCCCATATTTCTGAAGTTCTTAAATCCACTTCGTAGTTATCTAGAGTTCTATGTACTCTGTGTGCCTGCCCTGTTTCAATCTCAAATGTTAAGGTTAATGCGTTATCCATTTTTGTCATAATTTTGAAGTTCATAACTAATTTCGAGAGCAAAATTTTTGTTTCCTGTCATTTCGTTTTGAAGTTTTTTTTTTACTTAGATGAAAAGTTAGAATATAATTCGATGATCTGTATTCTGCTTTTATATCCCTTATGTTTAATGTGGATGGTCTTTTCATATCCATTTGGTTTAATGTGTGGGCTTAGATTATTACTTTAATAGTTAGATTTATTTTGATAGCCAA

Coding sequence (CDS)

ATGGCGTATGCAGCAATGAAGCCTACGAAGCCTGGTTTGGAGGACGCACAAGAGCAGATCCACAAGATTAGGATCACTCTTTCCTCCAAGAATGTGAAGAACCTTGAAAAGGATAAGAGACTGAGGGTCAAAGGACCTGTGAGGATGCCAACTAAAGTCCTGAACATCACCACAAGGAAATCTCCCTGCGGTGAAGGTACCAACACATGGGACAGATTTGAACTTCGTGTCCACAAGCGAGTCATCGACCTCTTTAGCTCTGCTGACGTTGTTAAGCAGATCACCTCGATCACCATCGAACCTGGTGTTGAGGTTGAAGTCACAATTGCCGATTGA

Protein sequence

MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD*

Homology

[Close]

BLAST of Cucsa.115650 vs. Swiss-Prot
Match: RS202_ARATH (40S ribosomal protein S20-2 OS=Arabidopsis thaliana GN=RPS20B PE=2 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 2.0e-56
Identity = 111/121 (91.74%), Postives = 112/121 (92.56%), Query Frame = 1


Query: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAY  MKPTK GLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYEPMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of Cucsa.115650 vs. Swiss-Prot
Match: RS201_ARATH (40S ribosomal protein S20-1 OS=Arabidopsis thaliana GN=RPS20A PE=2 SV=2)

HSP 1 Score: 216.5 bits (550), Expect = 1.7e-55
Identity = 109/120 (90.83%), Postives = 111/120 (92.50%), Query Frame = 1


Query: 2   AYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 61
           AY  MKP K GLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPT
Sbjct: 4   AYQPMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT 63

Query: 62  KVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 121
           KVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIAD
Sbjct: 64  KVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 123

[Close]

BLAST of Cucsa.115650 vs. Swiss-Prot
Match: RS20_ORYSJ (40S ribosomal protein S20 OS=Oryza sativa subsp. japonica GN=RPS20 PE=2 SV=2)

HSP 1 Score: 197.2 bits (500), Expect = 1.0e-49
Identity = 101/122 (82.79%), Postives = 110/122 (90.16%), Query Frame = 1


Query: 1   MAYAA-MKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRM 60
           +AYA  MK  K G E +QE  H+IRITLSSK+VKNLEKVC DLV+GAKDK L+VKGPVRM
Sbjct: 6   VAYAPPMKSGKIGFESSQEVQHRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRM 65

Query: 61  PTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTI 120
           PTKVL+ITTRKSPCGEGTNTWDRFE+RVHKRVIDL SSADVVKQITSITIEPGVEVEVTI
Sbjct: 66  PTKVLHITTRKSPCGEGTNTWDRFEMRVHKRVIDLVSSADVVKQITSITIEPGVEVEVTI 125

Query: 121 AD 122
           +D
Sbjct: 126 SD 127

[Close]

BLAST of Cucsa.115650 vs. Swiss-Prot
Match: RS20_XENLA (40S ribosomal protein S20 OS=Xenopus laevis GN=rps20 PE=1 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 2.1e-42
Identity = 80/107 (74.77%), Postives = 98/107 (91.59%), Query Frame = 1


Query: 15  DAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCG 74
           D +  IH+IRITL+S+NVK+LEKVCADL+RGAK+K L+VKGPVRMPTK L ITTRK+PCG
Sbjct: 12  DQEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCG 71

Query: 75  EGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 122
           EG+ TWDRF++R+HKR+IDL S +++VKQITSI+IEPGVEVEVTIAD
Sbjct: 72  EGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIAD 118

[Close]

BLAST of Cucsa.115650 vs. Swiss-Prot
Match: RS20_MACFA (40S ribosomal protein S20 OS=Macaca fascicularis GN=RPS20 PE=3 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 2.7e-42
Identity = 82/117 (70.09%), Postives = 101/117 (86.32%), Query Frame = 1


Query: 5   AMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVL 64
           A K T     + +  IH+IRITL+S+NVK+LEKVCADL+RGAK+K L+VKGPVRMPTK L
Sbjct: 2   AFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTL 61

Query: 65  NITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 122
            ITTRK+PCGEG+ TWDRF++R+HKR+IDL S +++VKQITSI+IEPGVEVEVTIAD
Sbjct: 62  RITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIAD 118

[Close]

BLAST of Cucsa.115650 vs. TrEMBL
Match: A0A0A0KL82_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G171160 PE=3 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 7.0e-61
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 1


Query: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of Cucsa.115650 vs. TrEMBL
Match: A0A0D2S4U3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G008300 PE=3 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 6.5e-59
Identity = 117/121 (96.69%), Postives = 120/121 (99.17%), Query Frame = 1


Query: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLE++QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEESQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVL+ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of Cucsa.115650 vs. TrEMBL
Match: A0A103YLK0_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_010245 PE=3 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 6.5e-59
Identity = 117/121 (96.69%), Postives = 119/121 (98.35%), Query Frame = 1


Query: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLE+ QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDK+LRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEEPQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKKLRVKGPVRMP 60

Query: 61  TKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of Cucsa.115650 vs. TrEMBL
Match: M0ZK92_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400000965 PE=3 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 8.5e-59
Identity = 116/121 (95.87%), Postives = 119/121 (98.35%), Query Frame = 1


Query: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLE+ QEQ+HKIRITLSSKNVKNLEKVCADLVRGAKDKRL+VKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEEPQEQVHKIRITLSSKNVKNLEKVCADLVRGAKDKRLKVKGPVRMP 60

Query: 61  TKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of Cucsa.115650 vs. TrEMBL
Match: V4S3T5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006225mg PE=3 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 8.5e-59
Identity = 117/121 (96.69%), Postives = 119/121 (98.35%), Query Frame = 1


Query: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLE+AQEQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVL+ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of Cucsa.115650 vs. TAIR10
Match: AT3G47370.2 (AT3G47370.2 Ribosomal protein S10p/S20e family protein)

HSP 1 Score: 219.5 bits (558), Expect = 1.1e-57
Identity = 111/121 (91.74%), Postives = 112/121 (92.56%), Query Frame = 1


Query: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAY  MKPTK GLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYEPMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of Cucsa.115650 vs. TAIR10
Match: AT3G45030.1 (AT3G45030.1 Ribosomal protein S10p/S20e family protein)

HSP 1 Score: 216.5 bits (550), Expect = 9.3e-57
Identity = 109/120 (90.83%), Postives = 111/120 (92.50%), Query Frame = 1


Query: 2   AYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 61
           AY  MKP K GLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPT
Sbjct: 4   AYQPMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT 63

Query: 62  KVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 121
           KVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIAD
Sbjct: 64  KVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 123

[Close]

BLAST of Cucsa.115650 vs. TAIR10
Match: AT5G62300.1 (AT5G62300.1 Ribosomal protein S10p/S20e family protein)

HSP 1 Score: 216.5 bits (550), Expect = 9.3e-57
Identity = 109/120 (90.83%), Postives = 111/120 (92.50%), Query Frame = 1


Query: 2   AYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 61
           AY  MKP K GLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPT
Sbjct: 4   AYQPMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT 63

Query: 62  KVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 121
           KVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIAD
Sbjct: 64  KVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 123

[Close]

BLAST of Cucsa.115650 vs. TAIR10
Match: AT3G13120.1 (AT3G13120.1 Ribosomal protein S10p/S20e family protein)

HSP 1 Score: 52.8 bits (125), Expect = 1.8e-07
Identity = 33/99 (33.33%), Postives = 52/99 (52.53%), Query Frame = 1


Query: 22  KIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWD 81
           KIRI L S  V  +E  C  ++  A++   +  GPV +PTK       KSP       + 
Sbjct: 94  KIRIKLRSYWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARF- 153

Query: 82  RFELRVHKRVID-LFSSADVVKQITSITIEPGVEVEVTI 120
            FE+R H+R+ID L+ +A  +  +  + +  GV+VEV +
Sbjct: 154 HFEIRTHQRMIDILYPTAQTIDSLMQLDLPAGVDVEVKL 191

[Close]

BLAST of Cucsa.115650 vs. NCBI nr
Match: gi|449451803|ref|XP_004143650.1| (PREDICTED: 40S ribosomal protein S20-2 [Cucumis sativus])

HSP 1 Score: 241.1 bits (614), Expect = 1.0e-60
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 1


Query: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of Cucsa.115650 vs. NCBI nr
Match: gi|659073124|ref|XP_008467267.1| (PREDICTED: 40S ribosomal protein S20-2 [Cucumis melo])

HSP 1 Score: 239.2 bits (609), Expect = 3.8e-60
Identity = 120/121 (99.17%), Postives = 121/121 (100.00%), Query Frame = 1


Query: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVL+ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of Cucsa.115650 vs. NCBI nr
Match: gi|659077257|ref|XP_008439109.1| (PREDICTED: 40S ribosomal protein S20-2-like [Cucumis melo])

HSP 1 Score: 237.7 bits (605), Expect = 1.1e-59
Identity = 119/121 (98.35%), Postives = 120/121 (99.17%), Query Frame = 1


Query: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLED QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVL+ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of Cucsa.115650 vs. NCBI nr
Match: gi|697109908|ref|XP_009608817.1| (PREDICTED: 40S ribosomal protein S20-2-like [Nicotiana tomentosiformis])

HSP 1 Score: 235.7 bits (600), Expect = 4.2e-59
Identity = 118/120 (98.33%), Postives = 119/120 (99.17%), Query Frame = 1


Query: 2   AYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 61
           AYAAMKPTKPGLE+ QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPT
Sbjct: 3   AYAAMKPTKPGLEEPQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 62

Query: 62  KVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 121
           KVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD
Sbjct: 63  KVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 122

[Close]

BLAST of Cucsa.115650 vs. NCBI nr
Match: gi|658016709|ref|XP_008343705.1| (PREDICTED: 40S ribosomal protein S20-2 [Malus domestica])

HSP 1 Score: 235.0 bits (598), Expect = 7.2e-59
Identity = 117/121 (96.69%), Postives = 119/121 (98.35%), Query Frame = 1


Query: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLE++QEQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

The following BLAST results are available for this feature:

BLAST of Cucsa.115650 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RS202_ARATH	2.0e-56	91.74	40S ribosomal protein S20-2 OS=Arabidopsis thaliana GN=RPS20B PE=2 SV=1	[more]
RS201_ARATH	1.7e-55	90.83	40S ribosomal protein S20-1 OS=Arabidopsis thaliana GN=RPS20A PE=2 SV=2	[more]
RS20_ORYSJ	1.0e-49	82.79	40S ribosomal protein S20 OS=Oryza sativa subsp. japonica GN=RPS20 PE=2 SV=2	[more]
RS20_XENLA	2.1e-42	74.77	40S ribosomal protein S20 OS=Xenopus laevis GN=rps20 PE=1 SV=1	[more]
RS20_MACFA	2.7e-42	70.09	40S ribosomal protein S20 OS=Macaca fascicularis GN=RPS20 PE=3 SV=1	[more]

BLAST of Cucsa.115650 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KL82_CUCSA	7.0e-61	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G171160 PE=3 SV=1	[more]
A0A0D2S4U3_GOSRA	6.5e-59	96.69	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G008300 PE=3 SV=1	[more]
A0A103YLK0_CYNCS	6.5e-59	96.69	Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_010245 PE=3 ...	[more]
M0ZK92_SOLTU	8.5e-59	95.87	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400000965 PE=3 SV=1	[more]
V4S3T5_9ROSI	8.5e-59	96.69	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006225mg PE=3 SV=1	[more]

BLAST of Cucsa.115650 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G47370.2	1.1e-57	91.74	Ribosomal protein S10p/S20e family protein	[more]
AT3G45030.1	9.3e-57	90.83	Ribosomal protein S10p/S20e family protein	[more]
AT5G62300.1	9.3e-57	90.83	Ribosomal protein S10p/S20e family protein	[more]
AT3G13120.1	1.8e-07	33.33	Ribosomal protein S10p/S20e family protein	[more]

BLAST of Cucsa.115650 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449451803\|ref\|XP_004143650.1\|	1.0e-60	100.00	PREDICTED: 40S ribosomal protein S20-2 [Cucumis sativus]	[more]
gi\|659073124\|ref\|XP_008467267.1\|	3.8e-60	99.17	PREDICTED: 40S ribosomal protein S20-2 [Cucumis melo]	[more]
gi\|659077257\|ref\|XP_008439109.1\|	1.1e-59	98.35	PREDICTED: 40S ribosomal protein S20-2-like [Cucumis melo]	[more]
gi\|697109908\|ref\|XP_009608817.1\|	4.2e-59	98.33	PREDICTED: 40S ribosomal protein S20-2-like [Nicotiana tomentosiformis]	[more]
gi\|658016709\|ref\|XP_008343705.1\|	7.2e-59	96.69	PREDICTED: 40S ribosomal protein S20-2 [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001848	Ribosomal_S10
IPR005729	Ribosomal_S10_euk/arc
IPR018268	Ribosomal_S10_CS
IPR027486	Ribosomal_S10_dom
IPR001848	Ribosomal_S10
IPR005729	Ribosomal_S10_euk/arc
IPR018268	Ribosomal_S10_CS
IPR027486	Ribosomal_S10_dom
IPR001848	Ribosomal_S10
IPR005729	Ribosomal_S10_euk/arc
IPR027486	Ribosomal_S10_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0015935	small ribosomal subunit
GO:0005622	intracellular
GO:0005840	ribosome
GO:0015935	small ribosomal subunit
GO:0005622	intracellular
GO:0005840	ribosome
GO:0015935	small ribosomal subunit

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation
GO:0006412	translation
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.115650.3	Cucsa.115650.3	mRNA
Cucsa.115650.2	Cucsa.115650.2	mRNA
Cucsa.115650.1	Cucsa.115650.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001848	Ribosomal protein S10	PRINTS	PR00971	RIBOSOMALS10	coord: 22..35 score: 4.6E-14coord: 69..83 score: 4.6E-14coord: 47..62 score: 4.6
IPR001848	Ribosomal protein S10	HAMAP	MF_00508	Ribosomal_S10	coord: 10..109 score: 14
IPR001848	Ribosomal protein S10	PANTHER	PTHR11700	30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER	coord: 1..111 score: 1.3
IPR005729	Ribosomal protein S10, eukaryotic/archaeal	TIGRFAMs	TIGR01046	TIGR01046	coord: 21..109 score: 8.6
IPR027486	Ribosomal protein S10 domain	GENE3D	G3DSA:3.30.70.600		coord: 20..110 score: 1.4
IPR027486	Ribosomal protein S10 domain	PFAM	PF00338	Ribosomal_S10	coord: 24..108 score: 3.0
IPR027486	Ribosomal protein S10 domain	SMART	SM01403	Ribosomal_S10_2	coord: 24..108 score: 5.5
IPR027486	Ribosomal protein S10 domain	unknown	SSF54999	Ribosomal protein S10	coord: 22..109 score: 2.09
None	No IPR available	PANTHER	PTHR11700:SF10	SUBFAMILY NOT NAMED	coord: 1..111 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.115650	Cla003569	Watermelon (97103) v1	cgywmB171
Cucsa.115650	Csa5G171160	Cucumber (Chinese Long) v2	cgycuB147
Cucsa.115650	MELO3C005411	Melon (DHL92) v3.5.1	cgymeB167
Cucsa.115650	ClCG01G005170	Watermelon (Charleston Gray)	cgywcgB170
Cucsa.115650	CSPI05G08050	Wild cucumber (PI 183967)	cgycpiB148
Cucsa.115650	CmaCh15G013850	Cucurbita maxima (Rimu)	cgycmaB0281
Cucsa.115650	CmaCh02G010140	Cucurbita maxima (Rimu)	cgycmaB0282
Cucsa.115650	CmoCh02G010290	Cucurbita moschata (Rifu)	cgycmoB0278
Cucsa.115650	CmoCh15G014470	Cucurbita moschata (Rifu)	cgycmoB0277
Cucsa.115650	Lsi09G005470	Bottle gourd (USVL1VR-Ls)	cgylsiB162
Cucsa.115650	Cp4.1LG05g07130	Cucurbita pepo (Zucchini)	cgycpeB0272
Cucsa.115650	Cp4.1LG13g00820	Cucurbita pepo (Zucchini)	cgycpeB0271
Cucsa.115650	MELO3C005411.2	Melon (DHL92) v3.6.1	cgymedB166
Cucsa.115650	CsaV3_5G005450	Cucumber (Chinese Long) v3	cgycucB153
Cucsa.115650	Cla97C01G005400	Watermelon (97103) v2	cgywmbB166
Cucsa.115650	Bhi12G000515	Wax gourd	cgywgoB194
Cucsa.115650	Carg08463	Silver-seed gourd	carcgyB0795

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None