Cla97C01G005400 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C01G005400
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	40S ribosomal protein S20-2
Location	Cla97Chr01 : 5142051 .. 5143530 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTATGCAGCGATGAAGCCTACGAAGCCTGGTTTGGAGGACGCTCAAGAGCAGATCCACAAGATTAGGATCACTCTTTCGTCGAAGAATGTGAAGAACCTTGAAAAGGGTATCTCCTTATACCTCTGTTGTTTTCTAGTTTGCAAGTTGAAATTTTCTTTTATCTGATATTGCATTCGAGCTCATATGCCATTTATCTCTTGGTTTTGCGTTTTTGTAAAGTGTTTCTGAAATGTATAGATTCTTCTACATTTGCTTGGTGATTGTTGTTGTTGTTTGTAATTCGCTGGCTTTTTCATTTTTCATATTCGTTCTGATTTTTAACGTGTTAGTTATTGCATTGTTCTTCATGTTATGGCCTTCAAAATTTATCTGCCAAATGAACTACCGATGGTTCCTCAGGGGGAATCATCCATGGTTCATAAATGGGGGACTTTGACTTTACTCGACAAGGGTTTTCTTTGCCCTAATTTATATGTTTTTGCATATAACTGAAATGTTATATCTTGATGTCTTCAGCTTTGTAAATGCTAGCGCAATTCTCATGGTTTACTTTTTTTTTTTTTTTAATCAACAGTTTGTGCTGATTTGGTTCGGGGTGCCAAAGACAAGAGACTGAGGGTTAAGGGACCTGTGAGGATGCCAACAAAAGTCCTGCACATTACCACCAGGAAATCTCCCTGCGGTGAAGGTACTTTTGAATCAATGCTCATTTTAAGAATAACCGTAAGCCTGGTTTTTGAATCCTGTCTGTTTGTTAGTAATTGTTACCCTGCATCAATCCTTCAGCTGAATTTTCCCTTATATCTTTCTTTCCATCATTGTATTTATCTGGGCTTGGTATTGGTGGTGTTAGTTAAATATTCATGCATCATGATGTTTTGATCTTCGCACCCTTGTGTTTTAGTGTTTTAATCCTCTTATCTCTTTATCCTTACTCCATGTTATATCCCTTAGACCTGTTCATTGTTTTTTCTTTCGTACTTGAACTTTGGATGGGAGTTTTGTAGAGTCTGTTGTCTGAATTTGACTTCATTCACAAAACGCTATTGAAATTGAATCATTGTCTGTAAGTCTTTGGAAATGTACTTTGACGAGTTTCTCTACAAAATTTTTAGATGTCTTCATGTTGTATGTAAAACTGGTATATGTAGTCATTACTCCATCATTGTTCTATAAATACTCAGTGAATATTGGTTATTTTTGTATATGCTTTATCGGGAAGCTTTGTTTGTTGTTGACATCTGCTCTGAGTTGCCATATTCATCAGAAAAAGCTGAGCAATCTTTTAGTTCAATTCTGAAAATTGGTCAAGGATCTTGTACTTTTGTTTGCAGGTACCAACACATGGGACAGATTTGAACTTCGTGTCCACAAGCGGGTTATCGACCTCTTTAGCTCTGCTGACGTTGTTAAGCAGATCACGTCTATCACCATTGAACCAGGTGTTGAGGTCGAAGTCACAATTGCAGATTGA

mRNA sequence

ATGGCGTATGCAGCGATGAAGCCTACGAAGCCTGGTTTGGAGGACGCTCAAGAGCAGATCCACAAGATTAGGATCACTCTTTCGTCGAAGAATGTGAAGAACCTTGAAAAGGTTTGTGCTGATTTGGTTCGGGGTGCCAAAGACAAGAGACTGAGGGTTAAGGGACCTGTGAGGATGCCAACAAAAGTCCTGCACATTACCACCAGGAAATCTCCCTGCGGTGAAGGTACCAACACATGGGACAGATTTGAACTTCGTGTCCACAAGCGGGTTATCGACCTCTTTAGCTCTGCTGACGTTGTTAAGCAGATCACGTCTATCACCATTGAACCAGGTGTTGAGGTCGAAGTCACAATTGCAGATTGA

Coding sequence (CDS)

ATGGCGTATGCAGCGATGAAGCCTACGAAGCCTGGTTTGGAGGACGCTCAAGAGCAGATCCACAAGATTAGGATCACTCTTTCGTCGAAGAATGTGAAGAACCTTGAAAAGGTTTGTGCTGATTTGGTTCGGGGTGCCAAAGACAAGAGACTGAGGGTTAAGGGACCTGTGAGGATGCCAACAAAAGTCCTGCACATTACCACCAGGAAATCTCCCTGCGGTGAAGGTACCAACACATGGGACAGATTTGAACTTCGTGTCCACAAGCGGGTTATCGACCTCTTTAGCTCTGCTGACGTTGTTAAGCAGATCACGTCTATCACCATTGAACCAGGTGTTGAGGTCGAAGTCACAATTGCAGATTGA

Protein sequence

MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD

Homology

[Close]

BLAST of Cla97C01G005400 vs. NCBI nr
Match: XP_008467267.1 (PREDICTED: 40S ribosomal protein S20-2 [Cucumis melo] >XP_016903425.1 PREDICTED: 40S ribosomal protein S20-2 [Cucumis melo])

HSP 1 Score: 240.4 bits (612), Expect = 3.3e-60
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of Cla97C01G005400 vs. NCBI nr
Match: XP_008439109.1 (PREDICTED: 40S ribosomal protein S20-2-like [Cucumis melo] >XP_022941728.1 40S ribosomal protein S20-2-like [Cucurbita moschata] >XP_022973095.1 40S ribosomal protein S20-2-like [Cucurbita maxima] >XP_023516475.1 40S ribosomal protein S20-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 238.8 bits (608), Expect = 9.6e-60
Identity = 120/121 (99.17%), Postives = 120/121 (99.17%), Query Frame = 0


Query: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLED QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of Cla97C01G005400 vs. NCBI nr
Match: XP_004143650.1 (PREDICTED: 40S ribosomal protein S20-2 [Cucumis sativus] >KGN50383.1 hypothetical protein Csa_5G171160 [Cucumis sativus])

HSP 1 Score: 237.7 bits (605), Expect = 2.1e-59
Identity = 120/121 (99.17%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVL+ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of Cla97C01G005400 vs. NCBI nr
Match: XP_022958705.1 (40S ribosomal protein S20-2 [Cucurbita moschata] >XP_022958706.1 40S ribosomal protein S20-2 [Cucurbita moschata] >XP_022929156.1 40S ribosomal protein S20-2 [Cucurbita moschata] >XP_022995277.1 40S ribosomal protein S20-2 [Cucurbita maxima] >XP_022995278.1 40S ribosomal protein S20-2 [Cucurbita maxima] >XP_022970228.1 40S ribosomal protein S20-2 [Cucurbita maxima] >XP_023532340.1 40S ribosomal protein S20-2 [Cucurbita pepo subsp. pepo] >XP_023551673.1 40S ribosomal protein S20-2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 237.3 bits (604), Expect = 2.8e-59
Identity = 120/121 (99.17%), Postives = 120/121 (99.17%), Query Frame = 0


Query: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTK GLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of Cla97C01G005400 vs. NCBI nr
Match: PIN01259.1 (40S ribosomal protein S20 [Handroanthus impetiginosus])

HSP 1 Score: 236.9 bits (603), Expect = 3.6e-59
Identity = 119/121 (98.35%), Postives = 120/121 (99.17%), Query Frame = 0


Query: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLE+AQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of Cla97C01G005400 vs. TrEMBL
Match: tr|A0A1S4E624|A0A1S4E624_CUCME (40S ribosomal protein S20-2 OS=Cucumis melo OX=3656 GN=LOC103504663 PE=3 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 2.2e-60
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of Cla97C01G005400 vs. TrEMBL
Match: tr|A0A1S3AXJ9|A0A1S3AXJ9_CUCME (40S ribosomal protein S20-2-like OS=Cucumis melo OX=3656 GN=LOC103483999 PE=3 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 6.3e-60
Identity = 120/121 (99.17%), Postives = 120/121 (99.17%), Query Frame = 0


Query: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLED QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of Cla97C01G005400 vs. TrEMBL
Match: tr|A0A0A0KL82|A0A0A0KL82_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G171160 PE=3 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 1.4e-59
Identity = 120/121 (99.17%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVL+ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of Cla97C01G005400 vs. TrEMBL
Match: tr|A0A2G9G7I6|A0A2G9G7I6_9LAMI (40S ribosomal protein S20 OS=Handroanthus impetiginosus OX=429701 GN=CDL12_26235 PE=3 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 2.4e-59
Identity = 119/121 (98.35%), Postives = 120/121 (99.17%), Query Frame = 0


Query: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLE+AQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of Cla97C01G005400 vs. TrEMBL
Match: tr|A0A2P5R6Y8|A0A2P5R6Y8_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA38967 PE=3 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 5.4e-59
Identity = 118/121 (97.52%), Postives = 120/121 (99.17%), Query Frame = 0


Query: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLE++QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEESQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of Cla97C01G005400 vs. Swiss-Prot
Match: sp|Q9STY6|RS202_ARATH (40S ribosomal protein S20-2 OS=Arabidopsis thaliana OX=3702 GN=RPS20B PE=2 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 7.5e-56
Identity = 111/121 (91.74%), Postives = 112/121 (92.56%), Query Frame = 0


Query: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAY  MKPTK GLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYEPMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of Cla97C01G005400 vs. Swiss-Prot
Match: sp|P49200|RS201_ARATH (40S ribosomal protein S20-1 OS=Arabidopsis thaliana OX=3702 GN=RPS20A PE=2 SV=2)

HSP 1 Score: 214.5 bits (545), Expect = 6.3e-55
Identity = 109/120 (90.83%), Postives = 111/120 (92.50%), Query Frame = 0


Query: 2   AYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 61
           AY  MKP K GLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPT
Sbjct: 4   AYQPMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT 63

Query: 62  KVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 121
           KVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIAD
Sbjct: 64  KVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 123

[Close]

BLAST of Cla97C01G005400 vs. Swiss-Prot
Match: sp|P35686|RS20_ORYSJ (40S ribosomal protein S20 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS20 PE=2 SV=2)

HSP 1 Score: 198.4 bits (503), Expect = 4.7e-50
Identity = 102/122 (83.61%), Postives = 110/122 (90.16%), Query Frame = 0


Query: 1   MAYA-AMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRM 60
           +AYA  MK  K G E +QE  H+IRITLSSK+VKNLEKVC DLV+GAKDK L+VKGPVRM
Sbjct: 6   VAYAPPMKSGKIGFESSQEVQHRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRM 65

Query: 61  PTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTI 120
           PTKVLHITTRKSPCGEGTNTWDRFE+RVHKRVIDL SSADVVKQITSITIEPGVEVEVTI
Sbjct: 66  PTKVLHITTRKSPCGEGTNTWDRFEMRVHKRVIDLVSSADVVKQITSITIEPGVEVEVTI 125

Query: 121 AD 122
           +D
Sbjct: 126 SD 127

[Close]

BLAST of Cla97C01G005400 vs. Swiss-Prot
Match: sp|P23403|RS20_XENLA (40S ribosomal protein S20 OS=Xenopus laevis OX=8355 GN=rps20 PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 6.1e-42
Identity = 80/107 (74.77%), Postives = 98/107 (91.59%), Query Frame = 0


Query: 15  DAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCG 74
           D +  IH+IRITL+S+NVK+LEKVCADL+RGAK+K L+VKGPVRMPTK L ITTRK+PCG
Sbjct: 12  DQEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCG 71

Query: 75  EGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 122
           EG+ TWDRF++R+HKR+IDL S +++VKQITSI+IEPGVEVEVTIAD
Sbjct: 72  EGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIAD 118

[Close]

BLAST of Cla97C01G005400 vs. Swiss-Prot
Match: sp|Q3ZBH8|RS20_BOVIN (40S ribosomal protein S20 OS=Bos taurus OX=9913 GN=RPS20 PE=3 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 8.0e-42
Identity = 82/117 (70.09%), Postives = 101/117 (86.32%), Query Frame = 0


Query: 5   AMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVL 64
           A K T     + +  IH+IRITL+S+NVK+LEKVCADL+RGAK+K L+VKGPVRMPTK L
Sbjct: 2   AFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTL 61

Query: 65  HITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 122
            ITTRK+PCGEG+ TWDRF++R+HKR+IDL S +++VKQITSI+IEPGVEVEVTIAD
Sbjct: 62  RITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIAD 118

[Close]

BLAST of Cla97C01G005400 vs. TAIR10
Match: AT3G47370.2 (Ribosomal protein S10p/S20e family protein)

HSP 1 Score: 217.6 bits (553), Expect = 4.1e-57
Identity = 111/121 (91.74%), Postives = 112/121 (92.56%), Query Frame = 0


Query: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAY  MKPTK GLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYEPMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of Cla97C01G005400 vs. TAIR10
Match: AT3G45030.1 (Ribosomal protein S10p/S20e family protein)

HSP 1 Score: 214.5 bits (545), Expect = 3.5e-56
Identity = 109/120 (90.83%), Postives = 111/120 (92.50%), Query Frame = 0


Query: 2   AYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 61
           AY  MKP K GLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPT
Sbjct: 4   AYQPMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT 63

Query: 62  KVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 121
           KVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIAD
Sbjct: 64  KVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 123

[Close]

BLAST of Cla97C01G005400 vs. TAIR10
Match: AT5G62300.1 (Ribosomal protein S10p/S20e family protein)

HSP 1 Score: 214.5 bits (545), Expect = 3.5e-56
Identity = 109/120 (90.83%), Postives = 111/120 (92.50%), Query Frame = 0


Query: 2   AYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 61
           AY  MKP K GLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPT
Sbjct: 4   AYQPMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT 63

Query: 62  KVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 121
           KVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIAD
Sbjct: 64  KVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 123

The following BLAST results are available for this feature:

BLAST of Cla97C01G005400 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008467267.1	3.3e-60	100.00	PREDICTED: 40S ribosomal protein S20-2 [Cucumis melo] >XP_016903425.1 PREDICTED:...	[more]
XP_008439109.1	9.6e-60	99.17	PREDICTED: 40S ribosomal protein S20-2-like [Cucumis melo] >XP_022941728.1 40S r...	[more]
XP_004143650.1	2.1e-59	99.17	PREDICTED: 40S ribosomal protein S20-2 [Cucumis sativus] >KGN50383.1 hypothetica...	[more]
XP_022958705.1	2.8e-59	99.17	40S ribosomal protein S20-2 [Cucurbita moschata] >XP_022958706.1 40S ribosomal p...	[more]
PIN01259.1	3.6e-59	98.35	40S ribosomal protein S20 [Handroanthus impetiginosus]	[more]

BLAST of Cla97C01G005400 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4E624\|A0A1S4E624_CUCME	2.2e-60	100.00	40S ribosomal protein S20-2 OS=Cucumis melo OX=3656 GN=LOC103504663 PE=3 SV=1	[more]
tr\|A0A1S3AXJ9\|A0A1S3AXJ9_CUCME	6.3e-60	99.17	40S ribosomal protein S20-2-like OS=Cucumis melo OX=3656 GN=LOC103483999 PE=3 SV...	[more]
tr\|A0A0A0KL82\|A0A0A0KL82_CUCSA	1.4e-59	99.17	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G171160 PE=3 SV=1	[more]
tr\|A0A2G9G7I6\|A0A2G9G7I6_9LAMI	2.4e-59	98.35	40S ribosomal protein S20 OS=Handroanthus impetiginosus OX=429701 GN=CDL12_26235...	[more]
tr\|A0A2P5R6Y8\|A0A2P5R6Y8_GOSBA	5.4e-59	97.52	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA38967 PE=3 SV...	[more]

BLAST of Cla97C01G005400 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9STY6\|RS202_ARATH	7.5e-56	91.74	40S ribosomal protein S20-2 OS=Arabidopsis thaliana OX=3702 GN=RPS20B PE=2 SV=1	[more]
sp\|P49200\|RS201_ARATH	6.3e-55	90.83	40S ribosomal protein S20-1 OS=Arabidopsis thaliana OX=3702 GN=RPS20A PE=2 SV=2	[more]
sp\|P35686\|RS20_ORYSJ	4.7e-50	83.61	40S ribosomal protein S20 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS20 PE=2...	[more]
sp\|P23403\|RS20_XENLA	6.1e-42	74.77	40S ribosomal protein S20 OS=Xenopus laevis OX=8355 GN=rps20 PE=1 SV=1	[more]
sp\|Q3ZBH8\|RS20_BOVIN	8.0e-42	70.09	40S ribosomal protein S20 OS=Bos taurus OX=9913 GN=RPS20 PE=3 SV=1	[more]

BLAST of Cla97C01G005400 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G47370.2	4.1e-57	91.74	Ribosomal protein S10p/S20e family protein	[more]
AT3G45030.1	3.5e-56	90.83	Ribosomal protein S10p/S20e family protein	[more]
AT5G62300.1	3.5e-56	90.83	Ribosomal protein S10p/S20e family protein	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0015935	small ribosomal subunit
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **INTERPRO**
Term	Definition
IPR018268	Ribosomal_S10_CS
IPR005729	Ribosomal_S10_euk/arc
IPR036838	Ribosomal_S10_dom_sf
IPR027486	Ribosomal_S10_dom
IPR001848	Ribosomal_S10

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0022627	cytosolic small ribosomal subunit
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C01G005400.1	Cla97C01G005400.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001848	Ribosomal protein S10	PRINTS	PR00971	RIBOSOMALS10	coord: 79..93 score: 52.69 coord: 22..35 score: 44.51 coord: 57..72 score: 42.43
IPR001848	Ribosomal protein S10	PANTHER	PTHR11700	30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER	coord: 4..121
IPR001848	Ribosomal protein S10	HAMAP	MF_00508	Ribosomal_S10	coord: 20..119 score: 18.39
IPR027486	Ribosomal protein S10 domain	SMART	SM01403	Ribosomal_S10_2	coord: 24..118 e-value: 2.0E-38 score: 143.7
IPR027486	Ribosomal protein S10 domain	PFAM	PF00338	Ribosomal_S10	coord: 24..118 e-value: 4.0E-28 score: 97.4
IPR036838	Ribosomal protein S10 domain superfamily	GENE3D	G3DSA:3.30.70.600		coord: 5..121 e-value: 2.4E-54 score: 184.4
IPR036838	Ribosomal protein S10 domain superfamily	SUPERFAMILY	SSF54999	Ribosomal protein S10	coord: 22..119
IPR005729	Ribosomal protein S10, eukaryotic/archaeal	TIGRFAM	TIGR01046	TIGR01046	coord: 21..119 e-value: 1.7E-40 score: 135.4
None	No IPR available	PANTHER	PTHR11700:SF18	SUBFAMILY NOT NAMED	coord: 4..121
IPR018268	Ribosomal protein S10, conserved site	PROSITE	PS00361	RIBOSOMAL_S10	coord: 46..61

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C01G005400	Cla003569	Watermelon (97103) v1	wmwmbB245
Cla97C01G005400	Csa5G171160	Cucumber (Chinese Long) v2	cuwmbB336
Cla97C01G005400	MELO3C005411	Melon (DHL92) v3.5.1	mewmbB009
Cla97C01G005400	ClCG01G005170	Watermelon (Charleston Gray)	wcgwmbB089
Cla97C01G005400	CSPI05G08050	Wild cucumber (PI 183967)	cpiwmbB349
Cla97C01G005400	Cucsa.115650	Cucumber (Gy14) v1	cgywmbB166
Cla97C01G005400	CmaCh02G010140	Cucurbita maxima (Rimu)	cmawmbB601
Cla97C01G005400	CmaCh15G013850	Cucurbita maxima (Rimu)	cmawmbB285
Cla97C01G005400	CmoCh15G014470	Cucurbita moschata (Rifu)	cmowmbB267
Cla97C01G005400	CmoCh02G010290	Cucurbita moschata (Rifu)	cmowmbB576
Cla97C01G005400	Lsi09G005470	Bottle gourd (USVL1VR-Ls)	lsiwmbB007
Cla97C01G005400	CsGy5G005440	Cucumber (Gy14) v2	cgybwmbB319
Cla97C01G005400	MELO3C005411.2	Melon (DHL92) v3.6.1	medwmbB007
Cla97C01G005400	Carg08463	Silver-seed gourd	carwmbB0741
Cla97C01G005400	Carg20839	Silver-seed gourd	carwmbB1093
Cla97C01G005400	CsaV3_5G005450	Cucumber (Chinese Long) v3	cucwmbB351
Cla97C01G005400	Bhi12G000515	Wax gourd	wgowmbB059

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None