Lsi09G005470 (gene) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CCTAGCTTCCAATCTTCATCTTCTTCGACACTAAATCCTCCAACTGAAAAACCTAGCACTGGTAGCCGCCCCTTCCTCCGGTAGTCTTCCCCACCGCTTCCGTTCCCTTTCACATGGTGTTTGCCCTAGTCTTTCTTACATCTGATTGGCTTGGTTTTGGAATTTTTGTTTTCAGGAAGTAAGCAAACATGGCGTATGCAGCGATGAAGCCAACGAAGCCTGGTTTGGAGGACGCACAGGAGCAGATCCACAAGATTAGGATCACTCTTTCTTCGAAGAATGTGAAGAACCTTGAAAAGGGTATCTCCTTATACCTCTGTTGTTTTCGAGTTTGCAAGTTGAAATTTTCTTTTATCTGATATTGCATTCGAACTCATTTGCCGTTTCTCTCTTGGTTTTGCGTTTTTGTAAAGTGTTTCTGAAATGTATAGATTCTTCCACATTTGCGTTATGATTGTTGTCTTTGTTTGTAACTTTGTAGCTCGTTGGCTTTTTCACTTTTCATGTTCTTGATTTTTAACGTGTTAATTATTGCATTGTTATTTATGTTATGGCCTTCGAAATTTATCTGCCAATTGAACTTCCGATGGTTGCTCAGGGAGAATAATCCATGGTTCACAAATGAGGGGCTTTGACTTTACTCAACAAGGGTTTTCTCTTCCCTAATTTATATGTTTTTACAAATAATTGAAATTTTGTTTCTTGATGTCTTCAGCTTTATAAATGTTTGCGCAATCCTCATGGTTTACTTTCTTTTTTAATCAACAGTTTGTGCTGATTTGGTTCGGGGTGCCAAAGACAAGAGACTGAGGGTTAAGGGACCTGTGAGGATGCCAACAAAAGTCCTGCACATCACCACCAGGAAATCTCCCTGCGGTGAAGGTACTTTTGAATCAATACTTATTTTAAGATTAACAGTAAGCCTGGTTTTGAAATCCTCTGTCTGTTTGTTTGTTAGTAATTGTTTCCCTAGATCACTCCCTCAACTGAATTTTCCCTTATATCTCTCTTTCCATCTACCATTTGTATTTATCTGGCATTGGCATTGGCATTGGTGGTGTTAGTTAAATATTCATGCATCATCATATTTTGATCTTCACACCCTTGTGTTTTAATGTTTTAATCCTCTTATCTCTTTATCCTTTCTCCATGTCAACAGCCCTTATACCTGTTCATTGTTTTTCATACTTGAACTTTGGATGGGAGTTTTGGTGACTGTTCATTGTTTTTCATACTTGAACTTTGGATGGGAGTTTTGGTGATTCTGCTGTATGAATTTGTCTTCATTCACGAAACTCTGTTGAAACTGAATTATTATTTGACCCTGCAATTCTAGAAAATAAGACAAGTAATTTATGAACGTGAGATCTGTAAGTCTTTGGAATTGTGCTTTGACGAGTTCCATGATAAAATTTTGAGTTTATTATTCTTTGTTAGTATATTATCTCCATATTGCATGTAAAACTGATATACTTAGTCAGTATCATAGATTCATAAATCATAATCAACTGTAGATAATGTACTTACTCTGGCATTGTTCTATAATTATTCAGTGAATATTGGTTATTTTTGTATATGCCATATTCATCAGATGAAGAACATTGATCTTTTAAATCCATTATGAATGTTAGTTAATGATCTTTTACTTTTGTTGTAGGTACCAACACATGGGACAGATTTGAACTTCGTGTCCACAAGCGGGTTATCGACCTCTTTAGCTCAGCTGACGTTGTTAAGCAGATCACGTCTATCACCATCGAACCAGGTGTTGAGGTTGAAGTCACAATTGCAGATTGATTGATGTGTTCAATATTTCTGAAGTTCTTAAATTCACTCGTAGTTATCTAGAGTTCTATGTACTCTGTGTGCCTGCCCTGTTTCAATCTCAAATGTTAAGGTTAATGCGTTATCCATTTTTGTCATAATTTTGAAGTTTATAACTTATTTCGAGAGCAAAATTTTTGTCTACTGTCATTTCGTTGATTTCTTTGGATTTTTTTTACTTAGATGAAAAGTTAGAATATATTTCCATGAGCTGTATTCTGCTTTTATGTGCCATATGTTTCAATGTGAATGGTCTTCCATATCCATCTGGTCAGTGTTTCAAAGTTTTATTTTGATAGCCAATATTATTAATTAAATCAAGTTGTGGGTCTCTTGTTTTGATGCCCTCTTGTTTCTCTTGTTTA CCTAGCTTCCAATCTTCATCTTCTTCGACACTAAATCCTCCAACTGAAAAACCTAGCACTGGTAGCCGCCCCTTCCTCCGGAAGTAAGCAAACATGGCGTATGCAGCGATGAAGCCAACGAAGCCTGGTTTGGAGGACGCACAGGAGCAGATCCACAAGATTAGGATCACTCTTTCTTCGAAGAATGTGAAGAACCTTGAAAAGGTTTGTGCTGATTTGGTTCGGGGTGCCAAAGACAAGAGACTGAGGGTTAAGGGACCTGTGAGGATGCCAACAAAAGTCCTGCACATCACCACCAGGAAATCTCCCTGCGGTGAAGGTACCAACACATGGGACAGATTTGAACTTCGTGTCCACAAGCGGGTTATCGACCTCTTTAGCTCAGCTGACGTTGTTAAGCAGATCACGTCTATCACCATCGAACCAGGTGTTGAGGTTGAAGTCACAATTGCAGATTGATTGATGTGTTCAATATTTCTGAAGTTCTTAAATTCACTCGTAGTTATCTAGAGTTCTATGTACTCTGTGTGCCTGCCCTGTTTCAATCTCAAATGTTAAGGTTAATGCGTTATCCATTTTTGTCATAATTTTGAAGTTTATAACTTATTTCGAGAGCAAAATTTTTGTCTACTGTCATTTCGTTGATTTCTTTGGATTTTTTTTACTTAGATGAAAAGTTAGAATATATTTCCATGAGCTGTATTCTGCTTTTATGTGCCATATGTTTCAATGTGAATGGTCTTCCATATCCATCTGGTCAGTGTTTCAAAGTTTTATTTTGATAGCCAATATTATTAATTAAATCAAGTTGTGGGTCTCTTGTTTTGATGCCCTCTTGTTTCTCTTGTTTA ATGGCGTATGCAGCGATGAAGCCAACGAAGCCTGGTTTGGAGGACGCACAGGAGCAGATCCACAAGATTAGGATCACTCTTTCTTCGAAGAATGTGAAGAACCTTGAAAAGGTTTGTGCTGATTTGGTTCGGGGTGCCAAAGACAAGAGACTGAGGGTTAAGGGACCTGTGAGGATGCCAACAAAAGTCCTGCACATCACCACCAGGAAATCTCCCTGCGGTGAAGGTACCAACACATGGGACAGATTTGAACTTCGTGTCCACAAGCGGGTTATCGACCTCTTTAGCTCAGCTGACGTTGTTAAGCAGATCACGTCTATCACCATCGAACCAGGTGTTGAGGTTGAAGTCACAATTGCAGATTGA MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD
BLAST of Lsi09G005470 vs. Swiss-Prot
Match: RS202_ARATH (40S ribosomal protein S20-2 OS=Arabidopsis thaliana GN=RPS20B PE=2 SV=1) HSP 1 Score: 217.6 bits (553), Expect = 7.3e-56 Identity = 111/121 (91.74%), Postives = 112/121 (92.56%), Query Frame = 1
BLAST of Lsi09G005470 vs. Swiss-Prot
Match: RS201_ARATH (40S ribosomal protein S20-1 OS=Arabidopsis thaliana GN=RPS20A PE=2 SV=2) HSP 1 Score: 214.5 bits (545), Expect = 6.2e-55 Identity = 109/120 (90.83%), Postives = 111/120 (92.50%), Query Frame = 1
BLAST of Lsi09G005470 vs. Swiss-Prot
Match: RS20_ORYSJ (40S ribosomal protein S20 OS=Oryza sativa subsp. japonica GN=RPS20 PE=2 SV=2) HSP 1 Score: 198.4 bits (503), Expect = 4.6e-50 Identity = 102/122 (83.61%), Postives = 110/122 (90.16%), Query Frame = 1
BLAST of Lsi09G005470 vs. Swiss-Prot
Match: RS20_XENLA (40S ribosomal protein S20 OS=Xenopus laevis GN=rps20 PE=1 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 6.0e-42 Identity = 80/107 (74.77%), Postives = 98/107 (91.59%), Query Frame = 1
BLAST of Lsi09G005470 vs. Swiss-Prot
Match: RS20_HUMAN (40S ribosomal protein S20 OS=Homo sapiens GN=RPS20 PE=1 SV=1) HSP 1 Score: 171.0 bits (432), Expect = 7.9e-42 Identity = 82/117 (70.09%), Postives = 101/117 (86.32%), Query Frame = 1
BLAST of Lsi09G005470 vs. TrEMBL
Match: A0A0A0KL82_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G171160 PE=3 SV=1) HSP 1 Score: 237.7 bits (605), Expect = 7.6e-60 Identity = 120/121 (99.17%), Postives = 121/121 (100.00%), Query Frame = 1
BLAST of Lsi09G005470 vs. TrEMBL
Match: A0A0D2S4U3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G008300 PE=3 SV=1) HSP 1 Score: 235.7 bits (600), Expect = 2.9e-59 Identity = 118/121 (97.52%), Postives = 120/121 (99.17%), Query Frame = 1
BLAST of Lsi09G005470 vs. TrEMBL
Match: V4S3T5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006225mg PE=3 SV=1) HSP 1 Score: 235.3 bits (599), Expect = 3.8e-59 Identity = 118/121 (97.52%), Postives = 119/121 (98.35%), Query Frame = 1
BLAST of Lsi09G005470 vs. TrEMBL
Match: A0A0D2NMN0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G064700 PE=3 SV=1) HSP 1 Score: 235.0 bits (598), Expect = 5.0e-59 Identity = 118/121 (97.52%), Postives = 119/121 (98.35%), Query Frame = 1
BLAST of Lsi09G005470 vs. TrEMBL
Match: A0A061G153_THECC (Ribosomal protein S10p/S20e family protein isoform 1 OS=Theobroma cacao GN=TCM_014967 PE=3 SV=1) HSP 1 Score: 235.0 bits (598), Expect = 5.0e-59 Identity = 118/121 (97.52%), Postives = 119/121 (98.35%), Query Frame = 1
BLAST of Lsi09G005470 vs. TAIR10
Match: AT3G47370.2 (AT3G47370.2 Ribosomal protein S10p/S20e family protein) HSP 1 Score: 217.6 bits (553), Expect = 4.1e-57 Identity = 111/121 (91.74%), Postives = 112/121 (92.56%), Query Frame = 1
BLAST of Lsi09G005470 vs. TAIR10
Match: AT3G45030.1 (AT3G45030.1 Ribosomal protein S10p/S20e family protein) HSP 1 Score: 214.5 bits (545), Expect = 3.5e-56 Identity = 109/120 (90.83%), Postives = 111/120 (92.50%), Query Frame = 1
BLAST of Lsi09G005470 vs. TAIR10
Match: AT5G62300.1 (AT5G62300.1 Ribosomal protein S10p/S20e family protein) HSP 1 Score: 214.5 bits (545), Expect = 3.5e-56 Identity = 109/120 (90.83%), Postives = 111/120 (92.50%), Query Frame = 1
BLAST of Lsi09G005470 vs. TAIR10
Match: AT3G13120.1 (AT3G13120.1 Ribosomal protein S10p/S20e family protein) HSP 1 Score: 51.2 bits (121), Expect = 5.1e-07 Identity = 33/99 (33.33%), Postives = 52/99 (52.53%), Query Frame = 1
BLAST of Lsi09G005470 vs. NCBI nr
Match: gi|659073124|ref|XP_008467267.1| (PREDICTED: 40S ribosomal protein S20-2 [Cucumis melo]) HSP 1 Score: 240.4 bits (612), Expect = 1.7e-60 Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 1
BLAST of Lsi09G005470 vs. NCBI nr
Match: gi|659077257|ref|XP_008439109.1| (PREDICTED: 40S ribosomal protein S20-2-like [Cucumis melo]) HSP 1 Score: 238.8 bits (608), Expect = 4.9e-60 Identity = 120/121 (99.17%), Postives = 120/121 (99.17%), Query Frame = 1
BLAST of Lsi09G005470 vs. NCBI nr
Match: gi|449451803|ref|XP_004143650.1| (PREDICTED: 40S ribosomal protein S20-2 [Cucumis sativus]) HSP 1 Score: 237.7 bits (605), Expect = 1.1e-59 Identity = 120/121 (99.17%), Postives = 121/121 (100.00%), Query Frame = 1
BLAST of Lsi09G005470 vs. NCBI nr
Match: gi|747078702|ref|XP_011086523.1| (PREDICTED: 40S ribosomal protein S20-2-like [Sesamum indicum]) HSP 1 Score: 235.7 bits (600), Expect = 4.2e-59 Identity = 118/121 (97.52%), Postives = 120/121 (99.17%), Query Frame = 1
BLAST of Lsi09G005470 vs. NCBI nr
Match: gi|747059828|ref|XP_011076314.1| (PREDICTED: 40S ribosomal protein S20-2 [Sesamum indicum]) HSP 1 Score: 235.7 bits (600), Expect = 4.2e-59 Identity = 118/121 (97.52%), Postives = 120/121 (99.17%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: None |