Cp4.1LG14g03550 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG14g03550
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG14 : 2226306 .. 2228077 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAACCTCTGCCGATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATTTCTTGATTGCGCTACTCCGAGGAGTCTGAGCGTTCAACTCGTGTCGAAATCGGCGTCGGATCGCCTTCTCGGCAAGTTTTTCGATGCCTCGAAATTCGACTTCGATTACGAACAGAGTAGTTTGTGGTCTCCGCCGATTCCGCGGCGAGTGTTTCTGGATTCGCCGGTTGATGTTTGCTCTGGTTATGAGGTTCTCTCGAAGCTTGAGAATGCGAAGAAGGCATGGAGGAAACTTATAACCTGTTTCGGAGTAAGTGCTCTCACGATCTCATTGTGATTTACGTAGTGACTGCTCTGTTTCGTTTTATTGTTTTCGAAATCGATTCGCTCTAATGTGAAAGAACCTGCAGTAGATTCAGGATTGTTTGAGAAATCGTGAAATCATTGCGTTTTATGCTTGAAACTTGAAACAAACGTATTCGCAGAGAGTTTTTATTCAAGCGAACGAGAAATCGAAGAGAAAAGGAAACAGAAAAACTATATTTACTTACTCATAATTGTCGAAGTAAAGAATTAGAATCATACATAAACCGCTATTGTCTACTTATTGATTATAAGCATGATTTTCATTTTCAGCCTACAAATACGAACTTCAAAAGTGTATGAGCTTACTTGTAGATATCCGCTGTGGTTATATGCATATGAGTGTGGAAGTTATCTCGTTATTGTTGTTTGATTCTAGTTGGAAATTTCTGGTGTTTATTGCAGGGATTTTGGTGTTCTTGGAATCATTGATTCCACCTTACAACTTTTGAGCAATTATCTCCCATTATGATCCGCGATTCAAAATGATTCGGGAAAAAAAAAAGAAGAAAGAAGAGAAATTAGGCTTCTCTTATGAGTTTCTGTTAATTGTTTTCTTACCATTGAAGGAAGAAAAAGAAGAAATCAAAATTCACGAATCTTATAATTTTACTTCCATTTGTCAGAAGTATGGAAAACATGAAGAATATTCACATTCTTTGGCTTCTCATTTTGGCACCGCAGAATTTGAATTTGGTATATACAGTTGTCCTTCGATCTCAGACATGCTCAGTACTGTTGCAACTGCAAGGGGGGGATGTTTAAAGCAGAAGAACGAAAGGGAGATTCAGAAAACTCTGCAATTGTCTGGGCAGGTAAGGCCAGAATATCTGCCTTTGCTTTTTGGTTAAGCTAAAGCACATTCGGAACAGCCACCTACCTACACCATGCACTGCTTTTTGCTTTTTCTTCTGATTATAATCCTCCTTTTGTCTATTGTAAGCTTGGATTAGATTCCTTTCAATTCGTACTCTTTTCGTTCCTCATACATATTCATACATAAAATGTTCACTAGTGCTGTTGGTGAGTAGCTAGATTAGGCTTACTTTTGTGCTCTCTGATGTCCTTGAATTCGATTCCCAAATTGTTACACACCCATTCGGACACTTTCTTTGGGCAAGGTTTATTAGATTTCACGATAAGAACCTTCCCATGCTTCCACCTAACTGTGATTCATATTGTGGAGCTAAAACTCCAATATATTTCTTTTAGGTAACCGAGTATGAACGAGAAAATGGCAAAGAAATGCAGTTAAAAGATAACATGTTTAATAGAAATGGTTCTCTAAAACCAGCTGTTCAACGTAAGTCCTCTCAAAGGAAGAAAAGGCATCCAGTGTTGTTACAAATTGAAAATTTGAACTCGAAAAGCTATAAACACGGTAGCTTGCTCTCCTAA

mRNA sequence

ATGCCAACCTCTGCCGATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATTTCTTGATTGCGCTACTCCGAGGAGTCTGAGCGTTCAACTCGTGTCGAAATCGGCGTCGGATCGCCTTCTCGGCAAGTTTTTCGATGCCTCGAAATTCGACTTCGATTACGAACAGAGTAGTTTGTGGTCTCCGCCGATTCCGCGGCGAGTGTTTCTGGATTCGCCGGTTGATGTTTGCTCTGGTTATGAGGTTCTCTCGAAGCTTGAGAATGCGAAGAAGGCATGGAGGAAACTTATAACCTGTTTCGGAAAGTATGGAAAACATGAAGAATATTCACATTCTTTGGCTTCTCATTTTGGCACCGCAGAATTTGAATTTGGTATATACAGTTGTCCTTCGATCTCAGACATGCTCAGTACTGTTGCAACTGCAAGGGGGGGATGTTTAAAGCAGAAGAACGAAAGGGAGATTCAGAAAACTCTGCAATTGTCTGGGCAGGTAACCGAGTATGAACGAGAAAATGGCAAAGAAATGCAGTTAAAAGATAACATGTTTAATAGAAATGGTTCTCTAAAACCAGCTGTTCAACGTAAGTCCTCTCAAAGGAAGAAAAGGCATCCAGTGTTGTTACAAATTGAAAATTTGAACTCGAAAAGCTATAAACACGGTAGCTTGCTCTCCTAA

Coding sequence (CDS)

ATGCCAACCTCTGCCGATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATTTCTTGATTGCGCTACTCCGAGGAGTCTGAGCGTTCAACTCGTGTCGAAATCGGCGTCGGATCGCCTTCTCGGCAAGTTTTTCGATGCCTCGAAATTCGACTTCGATTACGAACAGAGTAGTTTGTGGTCTCCGCCGATTCCGCGGCGAGTGTTTCTGGATTCGCCGGTTGATGTTTGCTCTGGTTATGAGGTTCTCTCGAAGCTTGAGAATGCGAAGAAGGCATGGAGGAAACTTATAACCTGTTTCGGAAAGTATGGAAAACATGAAGAATATTCACATTCTTTGGCTTCTCATTTTGGCACCGCAGAATTTGAATTTGGTATATACAGTTGTCCTTCGATCTCAGACATGCTCAGTACTGTTGCAACTGCAAGGGGGGGATGTTTAAAGCAGAAGAACGAAAGGGAGATTCAGAAAACTCTGCAATTGTCTGGGCAGGTAACCGAGTATGAACGAGAAAATGGCAAAGAAATGCAGTTAAAAGATAACATGTTTAATAGAAATGGTTCTCTAAAACCAGCTGTTCAACGTAAGTCCTCTCAAAGGAAGAAAAGGCATCCAGTGTTGTTACAAATTGAAAATTTGAACTCGAAAAGCTATAAACACGGTAGCTTGCTCTCCTAA

Protein sequence

MPTSADSSSSSSSSSSSSSSSSSFLDCATPRSLSVQLVSKSASDRLLGKFFDASKFDFDYEQSSLWSPPIPRRVFLDSPVDVCSGYEVLSKLENAKKAWRKLITCFGKYGKHEEYSHSLASHFGTAEFEFGIYSCPSISDMLSTVATARGGCLKQKNEREIQKTLQLSGQVTEYERENGKEMQLKDNMFNRNGSLKPAVQRKSSQRKKRHPVLLQIENLNSKSYKHGSLLS
BLAST of Cp4.1LG14g03550 vs. TrEMBL
Match: A0A0A0KVF5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G082960 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 9.2e-30
Identity = 75/95 (78.95%), Postives = 80/95 (84.21%), Query Frame = 1

Query: 13  SSSSSSSSSSSFLDCATPRSLSVQLVSKSASDRLLGKFFDASKFDFDYEQSSLWSPPIPR 72
           S  SSSS SSSFL C TP S ++Q+VSKSASDRLL KFFDASKFDFDY QSSLWSPPI R
Sbjct: 4   SLHSSSSPSSSFLQCLTPTSPTIQIVSKSASDRLLAKFFDASKFDFDYLQSSLWSPPIQR 63

Query: 73  RVFLDSPVDVCSGYE-VLSKLENAKKAWRKLITCF 107
           R+FLDSP DVCSG + VLSKLENAKKAWRK I CF
Sbjct: 64  RLFLDSPADVCSGSKVVLSKLENAKKAWRKFIICF 98

BLAST of Cp4.1LG14g03550 vs. TrEMBL
Match: A0A067KFA4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10567 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.5e-19
Identity = 59/98 (60.20%), Postives = 74/98 (75.51%), Query Frame = 1

Query: 9   SSSSSSSSSSSSSSSFLDCATPRSLSVQLVSKSASDRLLGKFFDASKFDFDYEQSSLWSP 68
           +S + S SSSS SSS +   TP   S+Q+VSKS S+RLLGKFFDAS++DFDYEQS LWSP
Sbjct: 4   TSPAGSYSSSSYSSSLI--TTP---SIQMVSKSVSERLLGKFFDASQYDFDYEQSGLWSP 63

Query: 69  PIPRRVFLDSPVDVCSGYEVLSKLENAKKAWRKLITCF 107
           PIPRR+F+ S  ++CS  +  SK + AKKAWR+ I CF
Sbjct: 64  PIPRRIFVPSTGNICSEDQFFSKFKKAKKAWRRRIACF 96

BLAST of Cp4.1LG14g03550 vs. TrEMBL
Match: A0A067DQ60_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g036709mg PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.1e-17
Identity = 58/103 (56.31%), Postives = 72/103 (69.90%), Query Frame = 1

Query: 10  SSSSSSSSSSSSSSFLDCATPRSLSVQLVSKSASDRLLGKFFDASKFDFDYEQSSLWSPP 69
           +S  S  S+SS  +F    T  S +VQ+VSKS SDRLLGKFFDA ++DFDYEQS LWSPP
Sbjct: 12  NSCCSCESTSSLPTF--STTGSSTTVQMVSKSVSDRLLGKFFDALQYDFDYEQSGLWSPP 71

Query: 70  IPRRVFLDSPVDVCSGYEVLSKLENAKKAWRKLITCFGKYGKH 113
           +PR+V+L+SP  +CS  E+ SKL+ AKKA R    CF    KH
Sbjct: 72  VPRKVYLNSPGKMCSDDEMFSKLKRAKKACRCRFFCFNIVIKH 112

BLAST of Cp4.1LG14g03550 vs. TrEMBL
Match: V4T630_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022947mg PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.1e-17
Identity = 58/103 (56.31%), Postives = 72/103 (69.90%), Query Frame = 1

Query: 10  SSSSSSSSSSSSSSFLDCATPRSLSVQLVSKSASDRLLGKFFDASKFDFDYEQSSLWSPP 69
           +S  S  S+SS  +F    T  S +VQ+VSKS SDRLLGKFFDA ++DFDYEQS LWSPP
Sbjct: 12  NSCCSCESTSSLPTF--STTGSSTTVQMVSKSVSDRLLGKFFDALQYDFDYEQSGLWSPP 71

Query: 70  IPRRVFLDSPVDVCSGYEVLSKLENAKKAWRKLITCFGKYGKH 113
           +PR+V+L+SP  +CS  E+ SKL+ AKKA R    CF    KH
Sbjct: 72  VPRKVYLNSPGKMCSDDEMFSKLKRAKKACRCRFFCFNIVIKH 112

BLAST of Cp4.1LG14g03550 vs. TrEMBL
Match: A0A061F9F8_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_031878 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.4e-17
Identity = 60/100 (60.00%), Postives = 70/100 (70.00%), Query Frame = 1

Query: 9   SSSSSSSSSSSSSSSFLDCATPRSLSVQLVSKSASDRLLGKFFDASKFDFDYEQSSLWSP 68
           S SSSS  SS  SSS        S S+Q+VSK+ S+RLLGKFFDAS++DFDYEQS LWSP
Sbjct: 4   SESSSSPPSSPGSSSLT------SPSIQMVSKTVSERLLGKFFDASQYDFDYEQSGLWSP 63

Query: 69  PIPRRVFLDSPVDVCSGYEVLSKLENAKKA--WRKLITCF 107
           P+ R VFL SP ++CS  E  SKL+ AKKA  WR  I CF
Sbjct: 64  PVRRSVFLTSPGNICSEDEFFSKLKKAKKACRWRLRIACF 97

BLAST of Cp4.1LG14g03550 vs. NCBI nr
Match: gi|700198412|gb|KGN53570.1| (hypothetical protein Csa_4G082960 [Cucumis sativus])

HSP 1 Score: 138.7 bits (348), Expect = 1.3e-29
Identity = 75/95 (78.95%), Postives = 80/95 (84.21%), Query Frame = 1

Query: 13  SSSSSSSSSSSFLDCATPRSLSVQLVSKSASDRLLGKFFDASKFDFDYEQSSLWSPPIPR 72
           S  SSSS SSSFL C TP S ++Q+VSKSASDRLL KFFDASKFDFDY QSSLWSPPI R
Sbjct: 4   SLHSSSSPSSSFLQCLTPTSPTIQIVSKSASDRLLAKFFDASKFDFDYLQSSLWSPPIQR 63

Query: 73  RVFLDSPVDVCSGYE-VLSKLENAKKAWRKLITCF 107
           R+FLDSP DVCSG + VLSKLENAKKAWRK I CF
Sbjct: 64  RLFLDSPADVCSGSKVVLSKLENAKKAWRKFIICF 98

BLAST of Cp4.1LG14g03550 vs. NCBI nr
Match: gi|643725940|gb|KDP34787.1| (hypothetical protein JCGZ_10567 [Jatropha curcas])

HSP 1 Score: 104.8 bits (260), Expect = 2.1e-19
Identity = 59/98 (60.20%), Postives = 74/98 (75.51%), Query Frame = 1

Query: 9   SSSSSSSSSSSSSSSFLDCATPRSLSVQLVSKSASDRLLGKFFDASKFDFDYEQSSLWSP 68
           +S + S SSSS SSS +   TP   S+Q+VSKS S+RLLGKFFDAS++DFDYEQS LWSP
Sbjct: 4   TSPAGSYSSSSYSSSLI--TTP---SIQMVSKSVSERLLGKFFDASQYDFDYEQSGLWSP 63

Query: 69  PIPRRVFLDSPVDVCSGYEVLSKLENAKKAWRKLITCF 107
           PIPRR+F+ S  ++CS  +  SK + AKKAWR+ I CF
Sbjct: 64  PIPRRIFVPSTGNICSEDQFFSKFKKAKKAWRRRIACF 96

BLAST of Cp4.1LG14g03550 vs. NCBI nr
Match: gi|567899920|ref|XP_006442448.1| (hypothetical protein CICLE_v10022947mg [Citrus clementina])

HSP 1 Score: 98.6 bits (244), Expect = 1.5e-17
Identity = 58/103 (56.31%), Postives = 72/103 (69.90%), Query Frame = 1

Query: 10  SSSSSSSSSSSSSSFLDCATPRSLSVQLVSKSASDRLLGKFFDASKFDFDYEQSSLWSPP 69
           +S  S  S+SS  +F    T  S +VQ+VSKS SDRLLGKFFDA ++DFDYEQS LWSPP
Sbjct: 12  NSCCSCESTSSLPTF--STTGSSTTVQMVSKSVSDRLLGKFFDALQYDFDYEQSGLWSPP 71

Query: 70  IPRRVFLDSPVDVCSGYEVLSKLENAKKAWRKLITCFGKYGKH 113
           +PR+V+L+SP  +CS  E+ SKL+ AKKA R    CF    KH
Sbjct: 72  VPRKVYLNSPGKMCSDDEMFSKLKRAKKACRCRFFCFNIVIKH 112

BLAST of Cp4.1LG14g03550 vs. NCBI nr
Match: gi|590610430|ref|XP_007021812.1| (Uncharacterized protein TCM_031878 [Theobroma cacao])

HSP 1 Score: 98.2 bits (243), Expect = 2.0e-17
Identity = 60/100 (60.00%), Postives = 70/100 (70.00%), Query Frame = 1

Query: 9   SSSSSSSSSSSSSSSFLDCATPRSLSVQLVSKSASDRLLGKFFDASKFDFDYEQSSLWSP 68
           S SSSS  SS  SSS        S S+Q+VSK+ S+RLLGKFFDAS++DFDYEQS LWSP
Sbjct: 4   SESSSSPPSSPGSSSLT------SPSIQMVSKTVSERLLGKFFDASQYDFDYEQSGLWSP 63

Query: 69  PIPRRVFLDSPVDVCSGYEVLSKLENAKKA--WRKLITCF 107
           P+ R VFL SP ++CS  E  SKL+ AKKA  WR  I CF
Sbjct: 64  PVRRSVFLTSPGNICSEDEFFSKLKKAKKACRWRLRIACF 97

BLAST of Cp4.1LG14g03550 vs. NCBI nr
Match: gi|731431929|ref|XP_010644110.1| (PREDICTED: uncharacterized protein LOC104877493 [Vitis vinifera])

HSP 1 Score: 94.7 bits (234), Expect = 2.2e-16
Identity = 64/113 (56.64%), Postives = 76/113 (67.26%), Query Frame = 1

Query: 1   MPTSADSSSSSSSSSSSSSSSSSFLDCATPRSLSVQLVSKSASDRLLGKFFDASKFDFDY 60
           MPTS  SS +SSSS  SSS          P   SVQ+VSKSASDRLLGKFFDAS+FDFDY
Sbjct: 1   MPTSGLSSPASSSSPGSSS----------PCIPSVQIVSKSASDRLLGKFFDASQFDFDY 60

Query: 61  EQSSLWSPPIPRRVFLDSPVDVCSGYEVLSKLE-NAKKA--WRKLITCFGKYG 111
           EQS LWSPP+ RR FL S  +  SG E+L+KL+ N K+A  WR+    +  +G
Sbjct: 61  EQSGLWSPPVQRRAFLTSSENCGSGGEMLAKLKSNVKRAQLWRRFFCFYAFWG 103

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KVF5_CUCSA9.2e-3078.95Uncharacterized protein OS=Cucumis sativus GN=Csa_4G082960 PE=4 SV=1[more]
A0A067KFA4_JATCU1.5e-1960.20Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10567 PE=4 SV=1[more]
A0A067DQ60_CITSI1.1e-1756.31Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g036709mg PE=4 SV=1[more]
V4T630_9ROSI1.1e-1756.31Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022947mg PE=4 SV=1[more]
A0A061F9F8_THECC1.4e-1760.00Uncharacterized protein OS=Theobroma cacao GN=TCM_031878 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|700198412|gb|KGN53570.1|1.3e-2978.95hypothetical protein Csa_4G082960 [Cucumis sativus][more]
gi|643725940|gb|KDP34787.1|2.1e-1960.20hypothetical protein JCGZ_10567 [Jatropha curcas][more]
gi|567899920|ref|XP_006442448.1|1.5e-1756.31hypothetical protein CICLE_v10022947mg [Citrus clementina][more]
gi|590610430|ref|XP_007021812.1|2.0e-1760.00Uncharacterized protein TCM_031878 [Theobroma cacao][more]
gi|731431929|ref|XP_010644110.1|2.2e-1656.64PREDICTED: uncharacterized protein LOC104877493 [Vitis vinifera][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG14g03550.1Cp4.1LG14g03550.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34287FAMILY NOT NAMEDcoord: 1..106
score: 6.4
NoneNo IPR availablePANTHERPTHR34287:SF1SUBFAMILY NOT NAMEDcoord: 1..106
score: 6.4

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG14g03550Cp4.1LG01g00660Cucurbita pepo (Zucchini)cpecpeB235