CmaCh04G006700 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G006700
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_1
Location	Cma_Chr04 : 3415590 .. 3416772 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCAACACTCTGTCTTCGTCTTTGCCGAGTAAGTTTCTCTTCTCACTTGTCTCTCCGATGCCAATCTCCACCGAATCTTCTACTCCCTCCTCCTCTTGCTTCATCGAATGCGCCACTCCGACGATTCCGAGCGTTCAACTGGTGTCGAAATCGGTGTCGGATCGGCTTCTCGGCAAGTTCTTCGACGCCTCGCAATTCGACTTCGATTACGAACAGAGTAGCTTGTGGTCTCCGCCGATTCCGCGGCGGGTTTTTTTGGATTCTCCGCTCGATGTTTGCTCCGGTTATGAGGTACTCTCGAAGCTCGAGAAGGCGAAGACGGCATGGAGGAAATTCGTAATATGTTTTAGAGTAAGTGCTCTCACGATCGCACTGTGATTTTACTCCGTGATTGCTGTGTTTTGTTTTCGTGATTCCGAACTCGAGTTGCTTTAATGAGAAAAAACCTGAGGCTGCTTTAGATTTTTTTTGAGAAAATTTGAAGAAATTGCCTTCAATTTCCATAATGAACTTACTGGCAAAGAATTTTTAGTCATGAATCTGTTTCAGAATAAGTGTATACGATCGCATTGTGATTTACTTTAGTGGTTGCTAGGTTTTCGTTTCTCCAGTTCGAAATCGATTCGCTGTAATGTGTAAGAACTGAGGTCGATTTAGGATTATTTGAGAAAATCGGAAGAAACTGCGTTCGATATAATTGAAACAACTCATTCGCAGCAGAGAATGTTATTCAAGCTAACGAGAAATCGAAGTGAAAAAGAAACGGAAAGACTATTATTGACTTCAGAAATTAGAATCATACATAAACCGATATTATCTCTTTATTGTTTACGAGCATGATTTTCCATTTCTGTCCACGAACACGAACTTCAAAATTGTCTCAACTGAATTATACATCCGATCCTCCGTGGTGTTTATATGCGTGGAGATATGCAAACTATGTTGTTATTGATTGTTGGATTCTAATTAGAAAATTGTGATGTTTATTGCAGGGATTTTGGTGTTCTTGGAATCCCTGATTCGACCTAACAACTTTTGAGCAATTCTCTCCCACTATGCTACAAGGCCCGATTGAGAACGATTGAGGAAAAGAAAAAGAAGAGAAATTAGGTTTTTCTTTTGAGCATTCAGTTAATTGTATTCTTACCATTGAAGAAAGAAAAGAAGAAGAAATCAAAATCCAC

mRNA sequence

GCAACACTCTGTCTTCGTCTTTGCCGAGTAAGTTTCTCTTCTCACTTGTCTCTCCGATGCCAATCTCCACCGAATCTTCTACTCCCTCCTCCTCTTGCTTCATCGAATGCGCCACTCCGACGATTCCGAGCGTTCAACTGGTGTCGAAATCGGTGTCGGATCGGCTTCTCGGCAAGTTCTTCGACGCCTCGCAATTCGACTTCGATTACGAACAGAGTAGCTTGTGGTCTCCGCCGATTCCGCGGCGGGTTTTTTTGGATTCTCCGCTCGATGTTTGCTCCGGTTATGAGGTACTCTCGAAGCTCGAGAAGGCGAAGACGGCATGGAGGAAATTCGTAATATGTTTTAGAGGATTTTGGTGTTCTTGGAATCCCTGATTCGACCTAACAACTTTTGAGCAATTCTCTCCCACTATGCTACAAGGCCCGATTGAGAACGATTGAGGAAAAGAAAAAGAAGAGAAATTAGGTTTTTCTTTTGAGCATTCAGTTAATTGTATTCTTACCATTGAAGAAAGAAAAGAAGAAGAAATCAAAATCCAC

Coding sequence (CDS)

ATGCCAATCTCCACCGAATCTTCTACTCCCTCCTCCTCTTGCTTCATCGAATGCGCCACTCCGACGATTCCGAGCGTTCAACTGGTGTCGAAATCGGTGTCGGATCGGCTTCTCGGCAAGTTCTTCGACGCCTCGCAATTCGACTTCGATTACGAACAGAGTAGCTTGTGGTCTCCGCCGATTCCGCGGCGGGTTTTTTTGGATTCTCCGCTCGATGTTTGCTCCGGTTATGAGGTACTCTCGAAGCTCGAGAAGGCGAAGACGGCATGGAGGAAATTCGTAATATGTTTTAGAGGATTTTGGTGTTCTTGGAATCCCTGA

Protein sequence

MPISTESSTPSSSCFIECATPTIPSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPPIPRRVFLDSPLDVCSGYEVLSKLEKAKTAWRKFVICFRGFWCSWNP

Homology

[Close]

BLAST of CmaCh04G006700 vs. TrEMBL
Match: A0A0A0KVF5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G082960 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 1.8e-33
Identity = 73/99 (73.74%), Postives = 83/99 (83.84%), Query Frame = 1


Query: 1  MPISTESSTPSSSCFIECATPTIPSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPP 60
          MPIS  SS+  SS F++C TPT P++Q+VSKS SDRLL KFFDAS+FDFDY QSSLWSPP
Sbjct: 1  MPISLHSSSSPSSSFLQCLTPTSPTIQIVSKSASDRLLAKFFDASKFDFDYLQSSLWSPP 60

Query: 61 IPRRVFLDSPLDVCSGYE-VLSKLEKAKTAWRKFVICFR 99
          I RR+FLDSP DVCSG + VLSKLE AK AWRKF+ICFR
Sbjct: 61 IQRRLFLDSPADVCSGSKVVLSKLENAKKAWRKFIICFR 99

[Close]

BLAST of CmaCh04G006700 vs. TrEMBL
Match: A0A067KFA4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10567 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.9e-23
Identity = 57/96 (59.38%), Postives = 71/96 (73.96%), Query Frame = 1


Query: 2  PISTESSTPSSSCFIECATPTIPSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPPI 61
          P  + SS+  SS  I     T PS+Q+VSKSVS+RLLGKFFDASQ+DFDYEQS LWSPPI
Sbjct: 6  PAGSYSSSSYSSSLI-----TTPSIQMVSKSVSERLLGKFFDASQYDFDYEQSGLWSPPI 65

Query: 62 PRRVFLDSPLDVCSGYEVLSKLEKAKTAWRKFVICF 98
          PRR+F+ S  ++CS  +  SK +KAK AWR+ + CF
Sbjct: 66 PRRIFVPSTGNICSEDQFFSKFKKAKKAWRRRIACF 96

[Close]

BLAST of CmaCh04G006700 vs. TrEMBL
Match: K7KWS1_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 4.2e-22
Identity = 56/103 (54.37%), Postives = 73/103 (70.87%), Query Frame = 1


Query: 3   ISTESSTPSSSCFIECATPTIPSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPPIP 62
           +S++  +P SS      T +IP++Q+VSKS S+RL+GKFFD SQFDF YEQS LWSPP+ 
Sbjct: 7   VSSDDQSPPSS------TSSIPTIQMVSKSFSERLMGKFFDVSQFDFVYEQSGLWSPPVS 66

Query: 63  RRVFLDSPLDVCSGYEVLSKLEKAKTAWRK--FVICFRGFWCS 104
           R VFL SP ++CS  E+L KL+KAK  W+K   +  F  FWCS
Sbjct: 67  RTVFLASPGNICSRDEMLRKLKKAKRNWKKSPMLCIFNVFWCS 103

[Close]

BLAST of CmaCh04G006700 vs. TrEMBL
Match: A0A061F9F8_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_031878 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 5.5e-22
Identity = 60/99 (60.61%), Postives = 73/99 (73.74%), Query Frame = 1


Query: 1  MPISTESSTPSSSCFIECATPTIPSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPP 60
          M IS  SS+P SS     ++ T PS+Q+VSK+VS+RLLGKFFDASQ+DFDYEQS LWSPP
Sbjct: 1  MAISESSSSPPSSP--GSSSLTSPSIQMVSKTVSERLLGKFFDASQYDFDYEQSGLWSPP 60

Query: 61 IPRRVFLDSPLDVCSGYEVLSKLEKAKTA--WRKFVICF 98
          + R VFL SP ++CS  E  SKL+KAK A  WR  + CF
Sbjct: 61 VRRSVFLTSPGNICSEDEFFSKLKKAKKACRWRLRIACF 97

[Close]

BLAST of CmaCh04G006700 vs. TrEMBL
Match: K7LV54_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_12G156400 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.6e-21
Identity = 56/102 (54.90%), Postives = 72/102 (70.59%), Query Frame = 1


Query: 4   STESSTPSSSCFIECATPTIPSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPPIPR 63
           S++  +PSS       T + P++Q+VSKS S+RLLGKFFDASQFDF YEQS LWSPP+ R
Sbjct: 8   SSDDQSPSSF------TSSTPTIQIVSKSFSERLLGKFFDASQFDFVYEQSELWSPPVRR 67

Query: 64  RVFLDSPLDVCSGYEVLSKLEKAKTAWRK--FVICFRGFWCS 104
            VFL SP ++CS  E+L KL+KAK  W++   +  F  FWCS
Sbjct: 68  TVFLASPGNICSQDEMLRKLKKAKRTWKRSPMLCIFNVFWCS 103

[Close]

BLAST of CmaCh04G006700 vs. NCBI nr
Match: gi|700198412|gb|KGN53570.1| (hypothetical protein Csa_4G082960 [Cucumis sativus])

HSP 1 Score: 149.8 bits (377), Expect = 2.6e-33
Identity = 73/99 (73.74%), Postives = 83/99 (83.84%), Query Frame = 1


Query: 1  MPISTESSTPSSSCFIECATPTIPSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPP 60
          MPIS  SS+  SS F++C TPT P++Q+VSKS SDRLL KFFDAS+FDFDY QSSLWSPP
Sbjct: 1  MPISLHSSSSPSSSFLQCLTPTSPTIQIVSKSASDRLLAKFFDASKFDFDYLQSSLWSPP 60

Query: 61 IPRRVFLDSPLDVCSGYE-VLSKLEKAKTAWRKFVICFR 99
          I RR+FLDSP DVCSG + VLSKLE AK AWRKF+ICFR
Sbjct: 61 IQRRLFLDSPADVCSGSKVVLSKLENAKKAWRKFIICFR 99

[Close]

BLAST of CmaCh04G006700 vs. NCBI nr
Match: gi|643725940|gb|KDP34787.1| (hypothetical protein JCGZ_10567 [Jatropha curcas])

HSP 1 Score: 115.9 bits (289), Expect = 4.2e-23
Identity = 57/96 (59.38%), Postives = 71/96 (73.96%), Query Frame = 1


Query: 2  PISTESSTPSSSCFIECATPTIPSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPPI 61
          P  + SS+  SS  I     T PS+Q+VSKSVS+RLLGKFFDASQ+DFDYEQS LWSPPI
Sbjct: 6  PAGSYSSSSYSSSLI-----TTPSIQMVSKSVSERLLGKFFDASQYDFDYEQSGLWSPPI 65

Query: 62 PRRVFLDSPLDVCSGYEVLSKLEKAKTAWRKFVICF 98
          PRR+F+ S  ++CS  +  SK +KAK AWR+ + CF
Sbjct: 66 PRRIFVPSTGNICSEDQFFSKFKKAKKAWRRRIACF 96

[Close]

BLAST of CmaCh04G006700 vs. NCBI nr
Match: gi|731431929|ref|XP_010644110.1| (PREDICTED: uncharacterized protein LOC104877493 [Vitis vinifera])

HSP 1 Score: 112.8 bits (281), Expect = 3.6e-22
Identity = 63/104 (60.58%), Postives = 73/104 (70.19%), Query Frame = 1


Query: 1   MPISTESSTPSSSCFIECATPTIPSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPP 60
           MP S  SS P+SS     ++P IPSVQ+VSKS SDRLLGKFFDASQFDFDYEQS LWSPP
Sbjct: 1   MPTSGLSS-PASSSSPGSSSPCIPSVQIVSKSASDRLLGKFFDASQFDFDYEQSGLWSPP 60

Query: 61  IPRRVFLDSPLDVCSGYEVLSKLE---KAKTAWRKFVICFRGFW 102
           + RR FL S  +  SG E+L+KL+   K    WR+F  CF  FW
Sbjct: 61  VQRRAFLTSSENCGSGGEMLAKLKSNVKRAQLWRRF-FCFYAFW 102

[Close]

BLAST of CmaCh04G006700 vs. NCBI nr
Match: gi|955327231|ref|XP_014632630.1| (PREDICTED: uncharacterized protein LOC106799161 [Glycine max])

HSP 1 Score: 112.1 bits (279), Expect = 6.1e-22
Identity = 56/103 (54.37%), Postives = 73/103 (70.87%), Query Frame = 1


Query: 3   ISTESSTPSSSCFIECATPTIPSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPPIP 62
           +S++  +P SS      T +IP++Q+VSKS S+RL+GKFFD SQFDF YEQS LWSPP+ 
Sbjct: 7   VSSDDQSPPSS------TSSIPTIQMVSKSFSERLMGKFFDVSQFDFVYEQSGLWSPPVS 66

Query: 63  RRVFLDSPLDVCSGYEVLSKLEKAKTAWRK--FVICFRGFWCS 104
           R VFL SP ++CS  E+L KL+KAK  W+K   +  F  FWCS
Sbjct: 67  RTVFLASPGNICSRDEMLRKLKKAKRNWKKSPMLCIFNVFWCS 103

[Close]

BLAST of CmaCh04G006700 vs. NCBI nr
Match: gi|590610430|ref|XP_007021812.1| (Uncharacterized protein TCM_031878 [Theobroma cacao])

HSP 1 Score: 111.7 bits (278), Expect = 7.9e-22
Identity = 60/99 (60.61%), Postives = 73/99 (73.74%), Query Frame = 1


Query: 1  MPISTESSTPSSSCFIECATPTIPSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPP 60
          M IS  SS+P SS     ++ T PS+Q+VSK+VS+RLLGKFFDASQ+DFDYEQS LWSPP
Sbjct: 1  MAISESSSSPPSSP--GSSSLTSPSIQMVSKTVSERLLGKFFDASQYDFDYEQSGLWSPP 60

Query: 61 IPRRVFLDSPLDVCSGYEVLSKLEKAKTA--WRKFVICF 98
          + R VFL SP ++CS  E  SKL+KAK A  WR  + CF
Sbjct: 61 VRRSVFLTSPGNICSEDEFFSKLKKAKKACRWRLRIACF 97

The following BLAST results are available for this feature:

BLAST of CmaCh04G006700 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh04G006700 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVF5_CUCSA	1.8e-33	73.74	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G082960 PE=4 SV=1	[more]
A0A067KFA4_JATCU	2.9e-23	59.38	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10567 PE=4 SV=1	[more]
K7KWS1_SOYBN	4.2e-22	54.37	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]
A0A061F9F8_THECC	5.5e-22	60.61	Uncharacterized protein OS=Theobroma cacao GN=TCM_031878 PE=4 SV=1	[more]
K7LV54_SOYBN	1.6e-21	54.90	Uncharacterized protein OS=Glycine max GN=GLYMA_12G156400 PE=4 SV=1	[more]

BLAST of CmaCh04G006700 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh04G006700 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198412\|gb\|KGN53570.1\|	2.6e-33	73.74	hypothetical protein Csa_4G082960 [Cucumis sativus]	[more]
gi\|643725940\|gb\|KDP34787.1\|	4.2e-23	59.38	hypothetical protein JCGZ_10567 [Jatropha curcas]	[more]
gi\|731431929\|ref\|XP_010644110.1\|	3.6e-22	60.58	PREDICTED: uncharacterized protein LOC104877493 [Vitis vinifera]	[more]
gi\|955327231\|ref\|XP_014632630.1\|	6.1e-22	54.37	PREDICTED: uncharacterized protein LOC106799161 [Glycine max]	[more]
gi\|590610430\|ref\|XP_007021812.1\|	7.9e-22	60.61	Uncharacterized protein TCM_031878 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G006700.1	CmaCh04G006700.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34287	FAMILY NOT NAMED	coord: 1..103 score: 6.7
None	No IPR available	PANTHER	PTHR34287:SF1	SUBFAMILY NOT NAMED	coord: 1..103 score: 6.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G006700	Cla005374	Watermelon (97103) v1	cmawmB686
CmaCh04G006700	Csa4G082960	Cucumber (Chinese Long) v2	cmacuB717
CmaCh04G006700	ClCG07G010220	Watermelon (Charleston Gray)	cmawcgB672
CmaCh04G006700	CmoCh04G007160	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G006700	CmoCh16G004680	Cucurbita moschata (Rifu)	cmacmoB702
CmaCh04G006700	Lsi07G002800	Bottle gourd (USVL1VR-Ls)	cmalsiB702
CmaCh04G006700	Cp4.1LG01g00660	Cucurbita pepo (Zucchini)	cmacpeB720
CmaCh04G006700	Cp4.1LG14g03550	Cucurbita pepo (Zucchini)	cmacpeB716
CmaCh04G006700	CsaV3_4G008110	Cucumber (Chinese Long) v3	cmacucB0855
CmaCh04G006700	Cla97C07G136900	Watermelon (97103) v2	cmawmbB778
CmaCh04G006700	Bhi01G002485	Wax gourd	cmawgoB0858
CmaCh04G006700	CsGy4G007760	Cucumber (Gy14) v2	cgybcmaB554
CmaCh04G006700	Carg13086	Silver-seed gourd	carcmaB0055
CmaCh04G006700	Carg11365	Silver-seed gourd	carcmaB0926

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G006700	Wax gourd	cmawgoB0847
CmaCh04G006700	Cucurbita maxima (Rimu)	cmacmaB352
CmaCh04G006700	Cucumber (Gy14) v1	cgycmaB0765
CmaCh04G006700	Wild cucumber (PI 183967)	cmacpiB727
CmaCh04G006700	Melon (DHL92) v3.5.1	cmameB699
CmaCh04G006700	Bottle gourd (USVL1VR-Ls)	cmalsiB695
CmaCh04G006700	Melon (DHL92) v3.6.1	cmamedB786