Carg13086 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg13086
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	BnaAnng35120D protein
Location	Cucurbita_argyrosperma_scaffold_101 : 215274 .. 215594 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAATCTCCACCGAATCTTCTACTCCCTCCTCCTCTTGCTTCATCGAATGCGCCAATCCGACGATTCCGAGCGTTCAACTGGTGTCGAAATCGGTGTCGGATCGGCTTCTCGGCAAGTTCTTCGACGCCTCGCAATTCGACTTCGATTACGAACAGAGTAGCTTGTGGTCTCCGCCGATTCCGCGGCGAGTTTTTTTGGATTCTCCGCTCGATGTTTGCTCCGGTTATGAGGTTCTCTCGAAGCTTGAGAAGGCGAAGACGGCATGGAGGAAATTCGTAATCTGTTTTAGAGTAAGTGCTCTCACGATCGCATTGTGA

mRNA sequence

ATGCCAATCTCCACCGAATCTTCTACTCCCTCCTCCTCTTGCTTCATCGAATGCGCCAATCCGACGATTCCGAGCGTTCAACTGGTGTCGAAATCGGTGTCGGATCGGCTTCTCGGCAAGTTCTTCGACGCCTCGCAATTCGACTTCGATTACGAACAGAGTAGCTTGTGGTCTCCGCCGATTCCGCGGCGAGTTTTTTTGGATTCTCCGCTCGATGTTTGCTCCGGTTATGAGGTTCTCTCGAAGCTTGAGAAGGCGAAGACGGCATGGAGGAAATTCGTAATCTGTTTTAGAGTAAGTGCTCTCACGATCGCATTGTGA

Coding sequence (CDS)

ATGCCAATCTCCACCGAATCTTCTACTCCCTCCTCCTCTTGCTTCATCGAATGCGCCAATCCGACGATTCCGAGCGTTCAACTGGTGTCGAAATCGGTGTCGGATCGGCTTCTCGGCAAGTTCTTCGACGCCTCGCAATTCGACTTCGATTACGAACAGAGTAGCTTGTGGTCTCCGCCGATTCCGCGGCGAGTTTTTTTGGATTCTCCGCTCGATGTTTGCTCCGGTTATGAGGTTCTCTCGAAGCTTGAGAAGGCGAAGACGGCATGGAGGAAATTCGTAATCTGTTTTAGAGTAAGTGCTCTCACGATCGCATTGTGA

Protein sequence

MPISTESSTPSSSCFIECANPTIPSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPPIPRRVFLDSPLDVCSGYEVLSKLEKAKTAWRKFVICFRVSALTIAL

Homology

[Close]

BLAST of Carg13086 vs. NCBI nr
Match: XP_022983484.1 (uncharacterized protein LOC111482071 [Cucurbita maxima])

HSP 1 Score: 199.5 bits (506), Expect = 5.6e-48
Identity = 97/98 (98.98%), Postives = 97/98 (98.98%), Query Frame = 0


Query: 1  MPISTESSTPSSSCFIECANPTIPSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPP 60
          MPISTESSTPSSSCFIECA PTIPSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPP
Sbjct: 1  MPISTESSTPSSSCFIECATPTIPSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPP 60

Query: 61 IPRRVFLDSPLDVCSGYEVLSKLEKAKTAWRKFVICFR 99
          IPRRVFLDSPLDVCSGYEVLSKLEKAKTAWRKFVICFR
Sbjct: 61 IPRRVFLDSPLDVCSGYEVLSKLEKAKTAWRKFVICFR 98

[Close]

BLAST of Carg13086 vs. NCBI nr
Match: XP_022942868.1 (uncharacterized protein LOC111447770 [Cucurbita moschata])

HSP 1 Score: 198.0 bits (502), Expect = 1.6e-47
Identity = 96/98 (97.96%), Postives = 97/98 (98.98%), Query Frame = 0


Query: 1  MPISTESSTPSSSCFIECANPTIPSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPP 60
          MPISTESSTPSSSCFI+CA PTIPSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPP
Sbjct: 1  MPISTESSTPSSSCFIKCATPTIPSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPP 60

Query: 61 IPRRVFLDSPLDVCSGYEVLSKLEKAKTAWRKFVICFR 99
          IPRRVFLDSPLDVCSGYEVLSKLEKAKTAWRKFVICFR
Sbjct: 61 IPRRVFLDSPLDVCSGYEVLSKLEKAKTAWRKFVICFR 98

[Close]

BLAST of Carg13086 vs. NCBI nr
Match: XP_023516499.1 (uncharacterized protein LOC111780353 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 196.8 bits (499), Expect = 3.7e-47
Identity = 95/98 (96.94%), Postives = 96/98 (97.96%), Query Frame = 0


Query: 1  MPISTESSTPSSSCFIECANPTIPSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPP 60
          MPISTESSTPSSSCFIEC  PTIPSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPP
Sbjct: 1  MPISTESSTPSSSCFIECGTPTIPSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPP 60

Query: 61 IPRRVFLDSPLDVCSGYEVLSKLEKAKTAWRKFVICFR 99
          IPRRVFLDSP+DVCSGYEVLSKLEKAKTAWRKFVICFR
Sbjct: 61 IPRRVFLDSPVDVCSGYEVLSKLEKAKTAWRKFVICFR 98

[Close]

BLAST of Carg13086 vs. NCBI nr
Match: XP_022142869.1 (uncharacterized protein LOC111012878 [Momordica charantia])

HSP 1 Score: 156.4 bits (394), Expect = 5.5e-35
Identity = 73/82 (89.02%), Postives = 76/82 (92.68%), Query Frame = 0


Query: 17  ECANPTIPSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPPIPRRVFLDSPLDVCSG 76
           EC +PT PSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPPIPRRVFLDSP +VCSG
Sbjct: 19  ECTSPTSPSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPPIPRRVFLDSPAEVCSG 78

Query: 77  YEVLSKLEKAKTAWRKFVICFR 99
           YEV SKL+ AK AWRKFVICFR
Sbjct: 79  YEVFSKLDSAKKAWRKFVICFR 100

[Close]

BLAST of Carg13086 vs. NCBI nr
Match: KGN53570.1 (hypothetical protein Csa_4G082960 [Cucumis sativus])

HSP 1 Score: 150.6 bits (379), Expect = 3.0e-33
Identity = 74/102 (72.55%), Postives = 85/102 (83.33%), Query Frame = 0


Query: 1   MPISTESSTPSSSCFIECANPTIPSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPP 60
           MPIS  SS+  SS F++C  PT P++Q+VSKS SDRLL KFFDAS+FDFDY QSSLWSPP
Sbjct: 1   MPISLHSSSSPSSSFLQCLTPTSPTIQIVSKSASDRLLAKFFDASKFDFDYLQSSLWSPP 60

Query: 61  IPRRVFLDSPLDVCSGYE-VLSKLEKAKTAWRKFVICFRVSA 102
           I RR+FLDSP DVCSG + VLSKLE AK AWRKF+ICFRVS+
Sbjct: 61  IQRRLFLDSPADVCSGSKVVLSKLENAKKAWRKFIICFRVSS 102

[Close]

BLAST of Carg13086 vs. TAIR10
Match: AT4G15140.1 (unknown protein)

HSP 1 Score: 44.3 bits (103), Expect = 5.5e-05
Identity = 24/51 (47.06%), Postives = 28/51 (54.90%), Query Frame = 0


Query: 22 TIPSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPPIPRRVFLDSPLD 73
          T   V+ +   +   LL KF D S F FDY QSSLWSP +PR     S LD
Sbjct: 21 TTKVVEYLQPVMCRELLCKFPDNSAFGFDYSQSSLWSPLLPRNYASPSDLD 71

[Close]

BLAST of Carg13086 vs. TrEMBL
Match: tr|A0A0A0KVF5|A0A0A0KVF5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G082960 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 2.0e-33
Identity = 74/102 (72.55%), Postives = 85/102 (83.33%), Query Frame = 0


Query: 1   MPISTESSTPSSSCFIECANPTIPSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPP 60
           MPIS  SS+  SS F++C  PT P++Q+VSKS SDRLL KFFDAS+FDFDY QSSLWSPP
Sbjct: 1   MPISLHSSSSPSSSFLQCLTPTSPTIQIVSKSASDRLLAKFFDASKFDFDYLQSSLWSPP 60

Query: 61  IPRRVFLDSPLDVCSGYE-VLSKLEKAKTAWRKFVICFRVSA 102
           I RR+FLDSP DVCSG + VLSKLE AK AWRKF+ICFRVS+
Sbjct: 61  IQRRLFLDSPADVCSGSKVVLSKLENAKKAWRKFIICFRVSS 102

[Close]

BLAST of Carg13086 vs. TrEMBL
Match: tr|A0A067KFA4|A0A067KFA4_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_10567 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 3.2e-23
Identity = 57/99 (57.58%), Postives = 73/99 (73.74%), Query Frame = 0


Query: 2   PISTESSTPSSSCFIECANPTIPSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPPI 61
           P  + SS+  SS  I     T PS+Q+VSKSVS+RLLGKFFDASQ+DFDYEQS LWSPPI
Sbjct: 6   PAGSYSSSSYSSSLI-----TTPSIQMVSKSVSERLLGKFFDASQYDFDYEQSGLWSPPI 65

Query: 62  PRRVFLDSPLDVCSGYEVLSKLEKAKTAWRKFVICFRVS 101
           PRR+F+ S  ++CS  +  SK +KAK AWR+ + CF ++
Sbjct: 66  PRRIFVPSTGNICSEDQFFSKFKKAKKAWRRRIACFNIA 99

[Close]

BLAST of Carg13086 vs. TrEMBL
Match: tr|A0A1J7I0D7|A0A1J7I0D7_LUPAN (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_15170 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 9.2e-23
Identity = 58/96 (60.42%), Postives = 72/96 (75.00%), Query Frame = 0


Query: 7   SSTPSSSCF---IECANPTIPSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPPIPR 66
           S +PSSS     + C+ PT P +Q+V+KSVS+RLLGKFFDASQFDFDYEQS LWSP I R
Sbjct: 8   SESPSSSSVETSLSCSTPTSPCIQMVTKSVSERLLGKFFDASQFDFDYEQSGLWSPLIKR 67

Query: 67  RVFLDSPLDVCSGYEVLSKLEKAKTAWR--KFVICF 98
            VFL SP  +C+  E+L KL+KAK AW+  + +ICF
Sbjct: 68  TVFLTSPGTICTDDEMLRKLKKAKKAWKINRLIICF 103

[Close]

BLAST of Carg13086 vs. TrEMBL
Match: tr|A0A2I4FK64|A0A2I4FK64_9ROSI (uncharacterized protein LOC108999585 OS=Juglans regia OX=51240 GN=LOC108999585 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 3.5e-22
Identity = 56/93 (60.22%), Postives = 71/93 (76.34%), Query Frame = 0


Query: 5  TESSTPSSSCFIECANPTIPSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPPIPRR 64
          +E S+P+S    E ++   PS+Q+VSKSVS+RLLGKFFDASQ+DFDYEQS LWSPPI RR
Sbjct: 4  SEGSSPASISQRENSSTASPSIQMVSKSVSERLLGKFFDASQYDFDYEQSGLWSPPIQRR 63

Query: 65 VFLDSPLDVCSGYEVLSKLEKAKTAWRKFVICF 98
          VFLD+P  +CS   + SKL+K   AWR+ + CF
Sbjct: 64 VFLDTPGSICSEDVIFSKLKK---AWRRRIFCF 93

[Close]

BLAST of Carg13086 vs. TrEMBL
Match: tr|A0A061F9F8|A0A061F9F8_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_031878 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.3e-21
Identity = 60/99 (60.61%), Postives = 73/99 (73.74%), Query Frame = 0


Query: 1  MPISTESSTPSSSCFIECANPTIPSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPP 60
          M IS  SS+P SS     ++ T PS+Q+VSK+VS+RLLGKFFDASQ+DFDYEQS LWSPP
Sbjct: 1  MAISESSSSPPSS--PGSSSLTSPSIQMVSKTVSERLLGKFFDASQYDFDYEQSGLWSPP 60

Query: 61 IPRRVFLDSPLDVCSGYEVLSKLEKAKTA--WRKFVICF 98
          + R VFL SP ++CS  E  SKL+KAK A  WR  + CF
Sbjct: 61 VRRSVFLTSPGNICSEDEFFSKLKKAKKACRWRLRIACF 97

The following BLAST results are available for this feature:

BLAST of Carg13086 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022983484.1	5.6e-48	98.98	uncharacterized protein LOC111482071 [Cucurbita maxima]	[more]
XP_022942868.1	1.6e-47	97.96	uncharacterized protein LOC111447770 [Cucurbita moschata]	[more]
XP_023516499.1	3.7e-47	96.94	uncharacterized protein LOC111780353 [Cucurbita pepo subsp. pepo]	[more]
XP_022142869.1	5.5e-35	89.02	uncharacterized protein LOC111012878 [Momordica charantia]	[more]
KGN53570.1	3.0e-33	72.55	hypothetical protein Csa_4G082960 [Cucumis sativus]	[more]

BLAST of Carg13086 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G15140.1	5.5e-05	47.06	unknown protein	[more]

BLAST of Carg13086 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg13086 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KVF5\|A0A0A0KVF5_CUCSA	2.0e-33	72.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G082960 PE=4 SV=1	[more]
tr\|A0A067KFA4\|A0A067KFA4_JATCU	3.2e-23	57.58	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_10567 PE=4 SV=1	[more]
tr\|A0A1J7I0D7\|A0A1J7I0D7_LUPAN	9.2e-23	60.42	Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_15170 PE=4 S...	[more]
tr\|A0A2I4FK64\|A0A2I4FK64_9ROSI	3.5e-22	60.22	uncharacterized protein LOC108999585 OS=Juglans regia OX=51240 GN=LOC108999585 P...	[more]
tr\|A0A061F9F8\|A0A061F9F8_THECC	1.3e-21	60.61	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_031878 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg13086-RA	Carg13086-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34287:SF1	SUBFAMILY NOT NAMED	coord: 10..99
None	No IPR available	PANTHER	PTHR34287	FAMILY NOT NAMED	coord: 10..99

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg13086	Csa4G082960	Cucumber (Chinese Long) v2	carcuB0046
Carg13086	ClCG07G010220	Watermelon (Charleston Gray)	carwcgB0050
Carg13086	CmaCh04G006700	Cucurbita maxima (Rimu)	carcmaB0055
Carg13086	CmoCh16G004680	Cucurbita moschata (Rifu)	carcmoB0057
Carg13086	CmoCh04G007160	Cucurbita moschata (Rifu)	carcmoB0058
Carg13086	Lsi07G002800	Bottle gourd (USVL1VR-Ls)	carlsiB042
Carg13086	Cp4.1LG01g00660	Cucurbita pepo (Zucchini)	carcpeB0061
Carg13086	Cp4.1LG14g03550	Cucurbita pepo (Zucchini)	carcpeB0060
Carg13086	CsGy4G007760	Cucumber (Gy14) v2	carcgybB0046
Carg13086	CsaV3_4G008110	Cucumber (Chinese Long) v3	carcucB0051
Carg13086	Cla97C07G136900	Watermelon (97103) v2	carwmbB0047
Carg13086	Bhi01G002485	Wax gourd	carwgoB0052

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg13086	Carg11365	Silver-seed gourd	carcarB053

The following block(s) are covering this gene:


Gene	Organism	Block
Carg13086	Silver-seed gourd	carcarB052
Carg13086	Cucurbita pepo (Zucchini)	carcpeB0058
Carg13086	Wild cucumber (PI 183967)	carcpiB0050
Carg13086	Bottle gourd (USVL1VR-Ls)	carlsiB043
Carg13086	Watermelon (97103) v1	carwmB0043