Cp4.1LG01g00660 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g00660
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	BnaAnng35120D protein
Location	Cp4.1LG01 : 3487128 .. 3487448 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAATCTCCACCGAATCTTCTACTCCCTCCTCCTCTTGCTTCATCGAATGCGGCACTCCGACGATTCCGAGCGTTCAACTCGTGTCGAAATCGGTGTCGGATCGGCTTCTCGGCAAGTTCTTCGACGCCTCGCAATTCGACTTCGATTACGAACAGAGTAGCTTGTGGTCTCCGCCGATTCCGCGGCGAGTTTTTTTGGATTCTCCGGTCGATGTTTGCTCCGGTTATGAGGTTCTCTCGAAGCTTGAGAAGGCGAAGACGGCATGGAGGAAATTCGTAATCTGTTTTAGAGTAAGTGCTCTCACGATCGCATTGTGA

mRNA sequence

ATGCCAATCTCCACCGAATCTTCTACTCCCTCCTCCTCTTGCTTCATCGAATGCGGCACTCCGACGATTCCGAGCGTTCAACTCGTGTCGAAATCGGTGTCGGATCGGCTTCTCGGCAAGTTCTTCGACGCCTCGCAATTCGACTTCGATTACGAACAGAGTAGCTTGTGGTCTCCGCCGATTCCGCGGCGAGTTTTTTTGGATTCTCCGGTCGATGTTTGCTCCGGTTATGAGGTTCTCTCGAAGCTTGAGAAGGCGAAGACGGCATGGAGGAAATTCGTAATCTGTTTTAGAGTAAGTGCTCTCACGATCGCATTGTGA

Coding sequence (CDS)

ATGCCAATCTCCACCGAATCTTCTACTCCCTCCTCCTCTTGCTTCATCGAATGCGGCACTCCGACGATTCCGAGCGTTCAACTCGTGTCGAAATCGGTGTCGGATCGGCTTCTCGGCAAGTTCTTCGACGCCTCGCAATTCGACTTCGATTACGAACAGAGTAGCTTGTGGTCTCCGCCGATTCCGCGGCGAGTTTTTTTGGATTCTCCGGTCGATGTTTGCTCCGGTTATGAGGTTCTCTCGAAGCTTGAGAAGGCGAAGACGGCATGGAGGAAATTCGTAATCTGTTTTAGAGTAAGTGCTCTCACGATCGCATTGTGA

Protein sequence

MPISTESSTPSSSCFIECGTPTIPSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPPIPRRVFLDSPVDVCSGYEVLSKLEKAKTAWRKFVICFRVSALTIAL

Homology

[Close]

BLAST of Cp4.1LG01g00660 vs. TrEMBL
Match: A0A0A0KVF5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G082960 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 3.7e-34
Identity = 75/102 (73.53%), Postives = 86/102 (84.31%), Query Frame = 1


Query: 1   MPISTESSTPSSSCFIECGTPTIPSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPP 60
           MPIS  SS+  SS F++C TPT P++Q+VSKS SDRLL KFFDAS+FDFDY QSSLWSPP
Sbjct: 1   MPISLHSSSSPSSSFLQCLTPTSPTIQIVSKSASDRLLAKFFDASKFDFDYLQSSLWSPP 60

Query: 61  IPRRVFLDSPVDVCSGYE-VLSKLEKAKTAWRKFVICFRVSA 102
           I RR+FLDSP DVCSG + VLSKLE AK AWRKF+ICFRVS+
Sbjct: 61  IQRRLFLDSPADVCSGSKVVLSKLENAKKAWRKFIICFRVSS 102

[Close]

BLAST of Cp4.1LG01g00660 vs. TrEMBL
Match: A0A067KFA4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10567 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.3e-23
Identity = 57/99 (57.58%), Postives = 73/99 (73.74%), Query Frame = 1


Query: 2   PISTESSTPSSSCFIECGTPTIPSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPPI 61
           P  + SS+  SS  I     T PS+Q+VSKSVS+RLLGKFFDASQ+DFDYEQS LWSPPI
Sbjct: 6   PAGSYSSSSYSSSLI-----TTPSIQMVSKSVSERLLGKFFDASQYDFDYEQSGLWSPPI 65

Query: 62  PRRVFLDSPVDVCSGYEVLSKLEKAKTAWRKFVICFRVS 101
           PRR+F+ S  ++CS  +  SK +KAK AWR+ + CF ++
Sbjct: 66  PRRIFVPSTGNICSEDQFFSKFKKAKKAWRRRIACFNIA 99

[Close]

BLAST of Cp4.1LG01g00660 vs. TrEMBL
Match: A0A061F9F8_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_031878 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 7.2e-22
Identity = 60/99 (60.61%), Postives = 72/99 (72.73%), Query Frame = 1


Query: 1  MPISTESSTPSSSCFIECGTPTIPSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPP 60
          M IS  SS+P SS      + T PS+Q+VSK+VS+RLLGKFFDASQ+DFDYEQS LWSPP
Sbjct: 1  MAISESSSSPPSSP--GSSSLTSPSIQMVSKTVSERLLGKFFDASQYDFDYEQSGLWSPP 60

Query: 61 IPRRVFLDSPVDVCSGYEVLSKLEKAKTA--WRKFVICF 98
          + R VFL SP ++CS  E  SKL+KAK A  WR  + CF
Sbjct: 61 VRRSVFLTSPGNICSEDEFFSKLKKAKKACRWRLRIACF 97

[Close]

BLAST of Cp4.1LG01g00660 vs. TrEMBL
Match: A0A067DQ60_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g036709mg PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 8.0e-21
Identity = 55/92 (59.78%), Postives = 68/92 (73.91%), Query Frame = 1


Query: 8   STPSSSCFIECGTPTIPSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPPIPRRVFL 67
           ST S   F   G+ T  +VQ+VSKSVSDRLLGKFFDA Q+DFDYEQS LWSPP+PR+V+L
Sbjct: 19  STSSLPTFSTTGSST--TVQMVSKSVSDRLLGKFFDALQYDFDYEQSGLWSPPVPRKVYL 78

Query: 68  DSPVDVCSGYEVLSKLEKAKTAWRKFVICFRV 100
           +SP  +CS  E+ SKL++AK A R    CF +
Sbjct: 79  NSPGKMCSDDEMFSKLKRAKKACRCRFFCFNI 108

[Close]

BLAST of Cp4.1LG01g00660 vs. TrEMBL
Match: V4T630_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022947mg PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 8.0e-21
Identity = 55/92 (59.78%), Postives = 68/92 (73.91%), Query Frame = 1


Query: 8   STPSSSCFIECGTPTIPSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPPIPRRVFL 67
           ST S   F   G+ T  +VQ+VSKSVSDRLLGKFFDA Q+DFDYEQS LWSPP+PR+V+L
Sbjct: 19  STSSLPTFSTTGSST--TVQMVSKSVSDRLLGKFFDALQYDFDYEQSGLWSPPVPRKVYL 78

Query: 68  DSPVDVCSGYEVLSKLEKAKTAWRKFVICFRV 100
           +SP  +CS  E+ SKL++AK A R    CF +
Sbjct: 79  NSPGKMCSDDEMFSKLKRAKKACRCRFFCFNI 108

[Close]

BLAST of Cp4.1LG01g00660 vs. NCBI nr
Match: gi|700198412|gb|KGN53570.1| (hypothetical protein Csa_4G082960 [Cucumis sativus])

HSP 1 Score: 152.1 bits (383), Expect = 5.3e-34
Identity = 75/102 (73.53%), Postives = 86/102 (84.31%), Query Frame = 1


Query: 1   MPISTESSTPSSSCFIECGTPTIPSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPP 60
           MPIS  SS+  SS F++C TPT P++Q+VSKS SDRLL KFFDAS+FDFDY QSSLWSPP
Sbjct: 1   MPISLHSSSSPSSSFLQCLTPTSPTIQIVSKSASDRLLAKFFDASKFDFDYLQSSLWSPP 60

Query: 61  IPRRVFLDSPVDVCSGYE-VLSKLEKAKTAWRKFVICFRVSA 102
           I RR+FLDSP DVCSG + VLSKLE AK AWRKF+ICFRVS+
Sbjct: 61  IQRRLFLDSPADVCSGSKVVLSKLENAKKAWRKFIICFRVSS 102

[Close]

BLAST of Cp4.1LG01g00660 vs. NCBI nr
Match: gi|643725940|gb|KDP34787.1| (hypothetical protein JCGZ_10567 [Jatropha curcas])

HSP 1 Score: 117.1 bits (292), Expect = 1.9e-23
Identity = 57/99 (57.58%), Postives = 73/99 (73.74%), Query Frame = 1


Query: 2   PISTESSTPSSSCFIECGTPTIPSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPPI 61
           P  + SS+  SS  I     T PS+Q+VSKSVS+RLLGKFFDASQ+DFDYEQS LWSPPI
Sbjct: 6   PAGSYSSSSYSSSLI-----TTPSIQMVSKSVSERLLGKFFDASQYDFDYEQSGLWSPPI 65

Query: 62  PRRVFLDSPVDVCSGYEVLSKLEKAKTAWRKFVICFRVS 101
           PRR+F+ S  ++CS  +  SK +KAK AWR+ + CF ++
Sbjct: 66  PRRIFVPSTGNICSEDQFFSKFKKAKKAWRRRIACFNIA 99

[Close]

BLAST of Cp4.1LG01g00660 vs. NCBI nr
Match: gi|590610430|ref|XP_007021812.1| (Uncharacterized protein TCM_031878 [Theobroma cacao])

HSP 1 Score: 111.3 bits (277), Expect = 1.0e-21
Identity = 60/99 (60.61%), Postives = 72/99 (72.73%), Query Frame = 1


Query: 1  MPISTESSTPSSSCFIECGTPTIPSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPP 60
          M IS  SS+P SS      + T PS+Q+VSK+VS+RLLGKFFDASQ+DFDYEQS LWSPP
Sbjct: 1  MAISESSSSPPSSP--GSSSLTSPSIQMVSKTVSERLLGKFFDASQYDFDYEQSGLWSPP 60

Query: 61 IPRRVFLDSPVDVCSGYEVLSKLEKAKTA--WRKFVICF 98
          + R VFL SP ++CS  E  SKL+KAK A  WR  + CF
Sbjct: 61 VRRSVFLTSPGNICSEDEFFSKLKKAKKACRWRLRIACF 97

[Close]

BLAST of Cp4.1LG01g00660 vs. NCBI nr
Match: gi|567899920|ref|XP_006442448.1| (hypothetical protein CICLE_v10022947mg [Citrus clementina])

HSP 1 Score: 107.8 bits (268), Expect = 1.1e-20
Identity = 55/92 (59.78%), Postives = 68/92 (73.91%), Query Frame = 1


Query: 8   STPSSSCFIECGTPTIPSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPPIPRRVFL 67
           ST S   F   G+ T  +VQ+VSKSVSDRLLGKFFDA Q+DFDYEQS LWSPP+PR+V+L
Sbjct: 19  STSSLPTFSTTGSST--TVQMVSKSVSDRLLGKFFDALQYDFDYEQSGLWSPPVPRKVYL 78

Query: 68  DSPVDVCSGYEVLSKLEKAKTAWRKFVICFRV 100
           +SP  +CS  E+ SKL++AK A R    CF +
Sbjct: 79  NSPGKMCSDDEMFSKLKRAKKACRCRFFCFNI 108

[Close]

BLAST of Cp4.1LG01g00660 vs. NCBI nr
Match: gi|731431929|ref|XP_010644110.1| (PREDICTED: uncharacterized protein LOC104877493 [Vitis vinifera])

HSP 1 Score: 107.1 bits (266), Expect = 2.0e-20
Identity = 61/100 (61.00%), Postives = 70/100 (70.00%), Query Frame = 1


Query: 1  MPISTESSTPSSSCFIECGTPTIPSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPP 60
          MP S  SS P+SS      +P IPSVQ+VSKS SDRLLGKFFDASQFDFDYEQS LWSPP
Sbjct: 1  MPTSGLSS-PASSSSPGSSSPCIPSVQIVSKSASDRLLGKFFDASQFDFDYEQSGLWSPP 60

Query: 61 IPRRVFLDSPVDVCSGYEVLSKLE---KAKTAWRKFVICF 98
          + RR FL S  +  SG E+L+KL+   K    WR+F  CF
Sbjct: 61 VQRRAFLTSSENCGSGGEMLAKLKSNVKRAQLWRRF-FCF 98

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g00660 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g00660 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVF5_CUCSA	3.7e-34	73.53	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G082960 PE=4 SV=1	[more]
A0A067KFA4_JATCU	1.3e-23	57.58	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10567 PE=4 SV=1	[more]
A0A061F9F8_THECC	7.2e-22	60.61	Uncharacterized protein OS=Theobroma cacao GN=TCM_031878 PE=4 SV=1	[more]
A0A067DQ60_CITSI	8.0e-21	59.78	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g036709mg PE=4 SV=1	[more]
V4T630_9ROSI	8.0e-21	59.78	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022947mg PE=4 SV=1	[more]

BLAST of Cp4.1LG01g00660 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g00660 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198412\|gb\|KGN53570.1\|	5.3e-34	73.53	hypothetical protein Csa_4G082960 [Cucumis sativus]	[more]
gi\|643725940\|gb\|KDP34787.1\|	1.9e-23	57.58	hypothetical protein JCGZ_10567 [Jatropha curcas]	[more]
gi\|590610430\|ref\|XP_007021812.1\|	1.0e-21	60.61	Uncharacterized protein TCM_031878 [Theobroma cacao]	[more]
gi\|567899920\|ref\|XP_006442448.1\|	1.1e-20	59.78	hypothetical protein CICLE_v10022947mg [Citrus clementina]	[more]
gi\|731431929\|ref\|XP_010644110.1\|	2.0e-20	61.00	PREDICTED: uncharacterized protein LOC104877493 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g00660.1	Cp4.1LG01g00660.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34287	FAMILY NOT NAMED	coord: 20..97 score: 9.1
None	No IPR available	PANTHER	PTHR34287:SF1	SUBFAMILY NOT NAMED	coord: 20..97 score: 9.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g00660	CmaCh04G006700	Cucurbita maxima (Rimu)	cmacpeB720
Cp4.1LG01g00660	CmoCh16G004680	Cucurbita moschata (Rifu)	cmocpeB314
Cp4.1LG01g00660	CmoCh04G007160	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g00660	Cla005374	Watermelon (97103) v1	cpewmB413
Cp4.1LG01g00660	Csa4G082960	Cucumber (Chinese Long) v2	cpecuB412
Cp4.1LG01g00660	ClCG07G010220	Watermelon (Charleston Gray)	cpewcgB407
Cp4.1LG01g00660	Lsi07G002800	Bottle gourd (USVL1VR-Ls)	cpelsiB381
Cp4.1LG01g00660	CsaV3_4G008110	Cucumber (Chinese Long) v3	cpecucB0513
Cp4.1LG01g00660	Bhi01G002485	Wax gourd	cpewgoB0523
Cp4.1LG01g00660	CsGy4G007760	Cucumber (Gy14) v2	cgybcpeB516
Cp4.1LG01g00660	Carg11365	Silver-seed gourd	carcpeB0928
Cp4.1LG01g00660	Carg13086	Silver-seed gourd	carcpeB0061

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG01g00660	Cp4.1LG14g03550	Cucurbita pepo (Zucchini)	cpecpeB235

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g00660	Wax gourd	cpewgoB0509
Cp4.1LG01g00660	Cucumber (Gy14) v1	cgycpeB0718
Cp4.1LG01g00660	Cucurbita maxima (Rimu)	cmacpeB352
Cp4.1LG01g00660	Wild cucumber (PI 183967)	cpecpiB411
Cp4.1LG01g00660	Bottle gourd (USVL1VR-Ls)	cpelsiB372
Cp4.1LG01g00660	Melon (DHL92) v3.5.1	cpemeB420
Cp4.1LG01g00660	Melon (DHL92) v3.6.1	cpemedB491