CmoCh16G004680 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh16G004680
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	BnaCnng70620D protein
Location	Cmo_Chr16 : 2237705 .. 2238642 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAATCAATCTAAACGCGCTCCACGATACCTTCGTACGCTGCAACACTTCTTCTTCTTCGTCGAGAAGTTTCTCTTCTCCATCATCTCTCCGATGCCAACCTCTGCCGATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATTTCTTGATTGCGCTACTCCGAAGAGTCTGAGCGTTCAACTCGTGTCTAAATTGGCGTCGGATCGCCTTCTCGGCAAGTTCTTCGATGCCTCGAAATTCGACTTCGATTACGAACAGAGTAGTTTGTGGTCTCCGCCGATTCCGCGGCGAGTGTTTCTGGATTCGCCGGCTGATGTTTGCTCTGGTTATGAGGTTCTCTCGAAGCTTGAGAATGCGAAGAAGGCATGGAGGAAACTTATAACTTGTTTCGGAGTAAGTGCTCTCACGATCTCATTGTGATTTACGTAGTGACTGCTCTGTTTCGTTTTATTGTTTTCGAAATCGATTCGCTCTAATGTGAAAGAACCTGCAGTAGATTCAGGATTGTTTGAGAAATCGTGAAATCATTGCGTTTTATGCTTGAAACTTGAAACAAACGTATTCGCAGAGAGTTTTTATTCAAGCGAACGAGAAATCGAAGAGAAAAGGAAACAGAAAAACTATATTTACTTACTCATAATTGTCGAAGTAAAGAATTAGAATCGTACATAAACCGCTATTGTCTACTTATTGATTATAAGCATGATTTTCATTTTCAGTCTACAAATACGAACTTCAAAAGTGTATGAGCTTACTTCTATATATCCGTTGTGGTTATATGCATATGAATGTGGAAGTTATCTCGTTATTGTTGTTTGATTCTAATTGGCAATTTTCTGGTGTTTATTGCAGGGATTGTTGTGTTCTTAGAATCATTGATTCCACCTTACAACTTTTGAGCAATTCTCTCCCATTATGATCCGCG

mRNA sequence

CAATCAATCTAAACGCGCTCCACGATACCTTCGTACGCTGCAACACTTCTTCTTCTTCGTCGAGAAGTTTCTCTTCTCCATCATCTCTCCGATGCCAACCTCTGCCGATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATTTCTTGATTGCGCTACTCCGAAGAGTCTGAGCGTTCAACTCGTGTCTAAATTGGCGTCGGATCGCCTTCTCGGCAAGTTCTTCGATGCCTCGAAATTCGACTTCGATTACGAACAGAGTAGTTTGTGGTCTCCGCCGATTCCGCGGCGAGTGTTTCTGGATTCGCCGGCTGATGTTTGCTCTGGTTATGAGGTTCTCTCGAAGCTTGAGAATGCGAAGAAGGCATGGAGGAAACTTATAACTTGTTTCGGAGGATTGTTGTGTTCTTAGAATCATTGATTCCACCTTACAACTTTTGAGCAATTCTCTCCCATTATGATCCGCG

Coding sequence (CDS)

ATGCCAACCTCTGCCGATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATTTCTTGATTGCGCTACTCCGAAGAGTCTGAGCGTTCAACTCGTGTCTAAATTGGCGTCGGATCGCCTTCTCGGCAAGTTCTTCGATGCCTCGAAATTCGACTTCGATTACGAACAGAGTAGTTTGTGGTCTCCGCCGATTCCGCGGCGAGTGTTTCTGGATTCGCCGGCTGATGTTTGCTCTGGTTATGAGGTTCTCTCGAAGCTTGAGAATGCGAAGAAGGCATGGAGGAAACTTATAACTTGTTTCGGAGGATTGTTGTGTTCTTAG

Homology

[Close]

BLAST of CmoCh16G004680 vs. TrEMBL
Match: A0A0A0KVF5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G082960 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 3.4e-30
Identity = 75/95 (78.95%), Postives = 80/95 (84.21%), Query Frame = 1


Query: 11  SSSSSSSSSSSFLDCATPKSLSVQLVSKLASDRLLGKFFDASKFDFDYEQSSLWSPPIPR 70
           S  SSSS SSSFL C TP S ++Q+VSK ASDRLL KFFDASKFDFDY QSSLWSPPI R
Sbjct: 4   SLHSSSSPSSSFLQCLTPTSPTIQIVSKSASDRLLAKFFDASKFDFDYLQSSLWSPPIQR 63

Query: 71  RVFLDSPADVCSGYE-VLSKLENAKKAWRKLITCF 105
           R+FLDSPADVCSG + VLSKLENAKKAWRK I CF
Sbjct: 64  RLFLDSPADVCSGSKVVLSKLENAKKAWRKFIICF 98

[Close]

BLAST of CmoCh16G004680 vs. TrEMBL
Match: A0A067KFA4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10567 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 7.0e-20
Identity = 59/100 (59.00%), Postives = 74/100 (74.00%), Query Frame = 1


Query: 5   ADSSSSSSSSSSSSSSSFLDCATPKSLSVQLVSKLASDRLLGKFFDASKFDFDYEQSSLW 64
           A +S + S SSSS SSS +   TP   S+Q+VSK  S+RLLGKFFDAS++DFDYEQS LW
Sbjct: 2   ACTSPAGSYSSSSYSSSLI--TTP---SIQMVSKSVSERLLGKFFDASQYDFDYEQSGLW 61

Query: 65  SPPIPRRVFLDSPADVCSGYEVLSKLENAKKAWRKLITCF 105
           SPPIPRR+F+ S  ++CS  +  SK + AKKAWR+ I CF
Sbjct: 62  SPPIPRRIFVPSTGNICSEDQFFSKFKKAKKAWRRRIACF 96

[Close]

BLAST of CmoCh16G004680 vs. TrEMBL
Match: A0A061F9F8_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_031878 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.3e-18
Identity = 61/102 (59.80%), Postives = 70/102 (68.63%), Query Frame = 1


Query: 5   ADSSSSSSSSSSSSSSSFLDCATPKSLSVQLVSKLASDRLLGKFFDASKFDFDYEQSSLW 64
           A S SSSS  SS  SSS        S S+Q+VSK  S+RLLGKFFDAS++DFDYEQS LW
Sbjct: 2   AISESSSSPPSSPGSSSLT------SPSIQMVSKTVSERLLGKFFDASQYDFDYEQSGLW 61

Query: 65  SPPIPRRVFLDSPADVCSGYEVLSKLENAKKA--WRKLITCF 105
           SPP+ R VFL SP ++CS  E  SKL+ AKKA  WR  I CF
Sbjct: 62  SPPVRRSVFLTSPGNICSEDEFFSKLKKAKKACRWRLRIACF 97

[Close]

BLAST of CmoCh16G004680 vs. TrEMBL
Match: A0A067DF05_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g046166mg PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 5.0e-18
Identity = 56/99 (56.57%), Postives = 71/99 (71.72%), Query Frame = 1


Query: 6   DSSSSSSSSSSSSSSSFLDCATPKSLSVQLVSKLASDRLLGKFFDASKFDFDYEQSSLWS 65
           D + S  S+SSS +SS     T  S +VQ+VSKL SDRL GKFFDA ++DF+YEQS LWS
Sbjct: 5   DFNHSCESTSSSPTSS----TTGSSTTVQMVSKLVSDRLQGKFFDALQYDFEYEQSGLWS 64

Query: 66  PPIPRRVFLDSPADVCSGYEVLSKLENAKKAWRKLITCF 105
           PP+PR+V+L+SP  +CS  E+ SKL+ AKKA R    CF
Sbjct: 65  PPVPRKVYLNSPGKICSDDEMFSKLKRAKKACRWRFFCF 99

[Close]

BLAST of CmoCh16G004680 vs. TrEMBL
Match: A0A067DQ60_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g036709mg PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.1e-17
Identity = 55/97 (56.70%), Postives = 69/97 (71.13%), Query Frame = 1


Query: 8   SSSSSSSSSSSSSSFLDCATPKSLSVQLVSKLASDRLLGKFFDASKFDFDYEQSSLWSPP 67
           +S  S  S+SS  +F    T  S +VQ+VSK  SDRLLGKFFDA ++DFDYEQS LWSPP
Sbjct: 12  NSCCSCESTSSLPTF--STTGSSTTVQMVSKSVSDRLLGKFFDALQYDFDYEQSGLWSPP 71

Query: 68  IPRRVFLDSPADVCSGYEVLSKLENAKKAWRKLITCF 105
           +PR+V+L+SP  +CS  E+ SKL+ AKKA R    CF
Sbjct: 72  VPRKVYLNSPGKMCSDDEMFSKLKRAKKACRCRFFCF 106

[Close]

BLAST of CmoCh16G004680 vs. TAIR10
Match: AT4G15140.1 (AT4G15140.1 unknown protein)

HSP 1 Score: 47.8 bits (112), Expect = 5.2e-06
Identity = 29/74 (39.19%), Postives = 40/74 (54.05%), Query Frame = 1


Query: 33  VQLVSKLASDRLLGKFFDASKFDFDYEQSSLWSPPIPRRVF----LDSPADVCSGYEVLS 92
           V+ +  +    LL KF D S F FDY QSSLWSP +PR       LDS + VC   + L 
Sbjct: 25  VEYLQPVMCRELLCKFPDNSAFGFDYSQSSLWSPLLPRNYASPSDLDSDSCVCRNLK-LG 84

Query: 93  KLENAKKAWRKLIT 103
           + +  KK   K+++
Sbjct: 85  EFQVGKKKKMKMMS 97

[Close]

BLAST of CmoCh16G004680 vs. NCBI nr
Match: gi|700198412|gb|KGN53570.1| (hypothetical protein Csa_4G082960 [Cucumis sativus])

HSP 1 Score: 139.0 bits (349), Expect = 4.8e-30
Identity = 75/95 (78.95%), Postives = 80/95 (84.21%), Query Frame = 1


Query: 11  SSSSSSSSSSSFLDCATPKSLSVQLVSKLASDRLLGKFFDASKFDFDYEQSSLWSPPIPR 70
           S  SSSS SSSFL C TP S ++Q+VSK ASDRLL KFFDASKFDFDY QSSLWSPPI R
Sbjct: 4   SLHSSSSPSSSFLQCLTPTSPTIQIVSKSASDRLLAKFFDASKFDFDYLQSSLWSPPIQR 63

Query: 71  RVFLDSPADVCSGYE-VLSKLENAKKAWRKLITCF 105
           R+FLDSPADVCSG + VLSKLENAKKAWRK I CF
Sbjct: 64  RLFLDSPADVCSGSKVVLSKLENAKKAWRKFIICF 98

[Close]

BLAST of CmoCh16G004680 vs. NCBI nr
Match: gi|643725940|gb|KDP34787.1| (hypothetical protein JCGZ_10567 [Jatropha curcas])

HSP 1 Score: 104.8 bits (260), Expect = 1.0e-19
Identity = 59/100 (59.00%), Postives = 74/100 (74.00%), Query Frame = 1


Query: 5   ADSSSSSSSSSSSSSSSFLDCATPKSLSVQLVSKLASDRLLGKFFDASKFDFDYEQSSLW 64
           A +S + S SSSS SSS +   TP   S+Q+VSK  S+RLLGKFFDAS++DFDYEQS LW
Sbjct: 2   ACTSPAGSYSSSSYSSSLI--TTP---SIQMVSKSVSERLLGKFFDASQYDFDYEQSGLW 61

Query: 65  SPPIPRRVFLDSPADVCSGYEVLSKLENAKKAWRKLITCF 105
           SPPIPRR+F+ S  ++CS  +  SK + AKKAWR+ I CF
Sbjct: 62  SPPIPRRIFVPSTGNICSEDQFFSKFKKAKKAWRRRIACF 96

[Close]

BLAST of CmoCh16G004680 vs. NCBI nr
Match: gi|590610430|ref|XP_007021812.1| (Uncharacterized protein TCM_031878 [Theobroma cacao])

HSP 1 Score: 99.8 bits (247), Expect = 3.2e-18
Identity = 61/102 (59.80%), Postives = 70/102 (68.63%), Query Frame = 1


Query: 5   ADSSSSSSSSSSSSSSSFLDCATPKSLSVQLVSKLASDRLLGKFFDASKFDFDYEQSSLW 64
           A S SSSS  SS  SSS        S S+Q+VSK  S+RLLGKFFDAS++DFDYEQS LW
Sbjct: 2   AISESSSSPPSSPGSSSLT------SPSIQMVSKTVSERLLGKFFDASQYDFDYEQSGLW 61

Query: 65  SPPIPRRVFLDSPADVCSGYEVLSKLENAKKA--WRKLITCF 105
           SPP+ R VFL SP ++CS  E  SKL+ AKKA  WR  I CF
Sbjct: 62  SPPVRRSVFLTSPGNICSEDEFFSKLKKAKKACRWRLRIACF 97

[Close]

BLAST of CmoCh16G004680 vs. NCBI nr
Match: gi|641821828|gb|KDO41443.1| (hypothetical protein CISIN_1g046166mg [Citrus sinensis])

HSP 1 Score: 98.6 bits (244), Expect = 7.2e-18
Identity = 56/99 (56.57%), Postives = 71/99 (71.72%), Query Frame = 1


Query: 6   DSSSSSSSSSSSSSSSFLDCATPKSLSVQLVSKLASDRLLGKFFDASKFDFDYEQSSLWS 65
           D + S  S+SSS +SS     T  S +VQ+VSKL SDRL GKFFDA ++DF+YEQS LWS
Sbjct: 5   DFNHSCESTSSSPTSS----TTGSSTTVQMVSKLVSDRLQGKFFDALQYDFEYEQSGLWS 64

Query: 66  PPIPRRVFLDSPADVCSGYEVLSKLENAKKAWRKLITCF 105
           PP+PR+V+L+SP  +CS  E+ SKL+ AKKA R    CF
Sbjct: 65  PPVPRKVYLNSPGKICSDDEMFSKLKRAKKACRWRFFCF 99

[Close]

BLAST of CmoCh16G004680 vs. NCBI nr
Match: gi|567899920|ref|XP_006442448.1| (hypothetical protein CICLE_v10022947mg [Citrus clementina])

HSP 1 Score: 97.4 bits (241), Expect = 1.6e-17
Identity = 55/97 (56.70%), Postives = 69/97 (71.13%), Query Frame = 1


Query: 8   SSSSSSSSSSSSSSFLDCATPKSLSVQLVSKLASDRLLGKFFDASKFDFDYEQSSLWSPP 67
           +S  S  S+SS  +F    T  S +VQ+VSK  SDRLLGKFFDA ++DFDYEQS LWSPP
Sbjct: 12  NSCCSCESTSSLPTF--STTGSSTTVQMVSKSVSDRLLGKFFDALQYDFDYEQSGLWSPP 71

Query: 68  IPRRVFLDSPADVCSGYEVLSKLENAKKAWRKLITCF 105
           +PR+V+L+SP  +CS  E+ SKL+ AKKA R    CF
Sbjct: 72  VPRKVYLNSPGKMCSDDEMFSKLKRAKKACRCRFFCF 106

The following BLAST results are available for this feature:

BLAST of CmoCh16G004680 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh16G004680 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVF5_CUCSA	3.4e-30	78.95	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G082960 PE=4 SV=1	[more]
A0A067KFA4_JATCU	7.0e-20	59.00	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10567 PE=4 SV=1	[more]
A0A061F9F8_THECC	2.3e-18	59.80	Uncharacterized protein OS=Theobroma cacao GN=TCM_031878 PE=4 SV=1	[more]
A0A067DF05_CITSI	5.0e-18	56.57	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g046166mg PE=4 SV=1	[more]
A0A067DQ60_CITSI	1.1e-17	56.70	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g036709mg PE=4 SV=1	[more]

BLAST of CmoCh16G004680 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G15140.1	5.2e-06	39.19	unknown protein	[more]

BLAST of CmoCh16G004680 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198412\|gb\|KGN53570.1\|	4.8e-30	78.95	hypothetical protein Csa_4G082960 [Cucumis sativus]	[more]
gi\|643725940\|gb\|KDP34787.1\|	1.0e-19	59.00	hypothetical protein JCGZ_10567 [Jatropha curcas]	[more]
gi\|590610430\|ref\|XP_007021812.1\|	3.2e-18	59.80	Uncharacterized protein TCM_031878 [Theobroma cacao]	[more]
gi\|641821828\|gb\|KDO41443.1\|	7.2e-18	56.57	hypothetical protein CISIN_1g046166mg [Citrus sinensis]	[more]
gi\|567899920\|ref\|XP_006442448.1\|	1.6e-17	56.70	hypothetical protein CICLE_v10022947mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G004680.1	CmoCh16G004680.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34287	FAMILY NOT NAMED	coord: 6..104 score: 1.5
None	No IPR available	PANTHER	PTHR34287:SF1	SUBFAMILY NOT NAMED	coord: 6..104 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh16G004680	CmaCh04G006700	Cucurbita maxima (Rimu)	cmacmoB702
CmoCh16G004680	Cla005374	Watermelon (97103) v1	cmowmB302
CmoCh16G004680	Csa4G082960	Cucumber (Chinese Long) v2	cmocuB325
CmoCh16G004680	ClCG07G010220	Watermelon (Charleston Gray)	cmowcgB293
CmoCh16G004680	Lsi07G002800	Bottle gourd (USVL1VR-Ls)	cmolsiB318
CmoCh16G004680	Cp4.1LG01g00660	Cucurbita pepo (Zucchini)	cmocpeB314
CmoCh16G004680	CsaV3_4G008110	Cucumber (Chinese Long) v3	cmocucB0388
CmoCh16G004680	Cla97C07G136900	Watermelon (97103) v2	cmowmbB335
CmoCh16G004680	Bhi01G002485	Wax gourd	cmowgoB0433
CmoCh16G004680	CsGy4G007760	Cucumber (Gy14) v2	cgybcmoB467
CmoCh16G004680	Carg11365	Silver-seed gourd	carcmoB0898
CmoCh16G004680	Carg13086	Silver-seed gourd	carcmoB0057

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh16G004680	CmoCh04G007160	Cucurbita moschata (Rifu)	cmocmoB287

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh16G004680	Cucurbita moschata (Rifu)	cmocmoB286
CmoCh16G004680	Cucurbita moschata (Rifu)	cmocmoB288
CmoCh16G004680	Cucumber (Gy14) v1	cgycmoB0750
CmoCh16G004680	Cucurbita maxima (Rimu)	cmacmoB322
CmoCh16G004680	Cucurbita maxima (Rimu)	cmacmoB701
CmoCh16G004680	Cucurbita maxima (Rimu)	cmacmoB703
CmoCh16G004680	Wild cucumber (PI 183967)	cmocpiB332
CmoCh16G004680	Melon (DHL92) v3.5.1	cmomeB294
CmoCh16G004680	Cucurbita pepo (Zucchini)	cmocpeB307
CmoCh16G004680	Cucurbita pepo (Zucchini)	cmocpeB311
CmoCh16G004680	Cucurbita pepo (Zucchini)	cmocpeB315
CmoCh16G004680	Cucumber (Gy14) v2	cgybcmoB470
CmoCh16G004680	Melon (DHL92) v3.6.1	cmomedB337
CmoCh16G004680	Silver-seed gourd	carcmoB0054
CmoCh16G004680	Silver-seed gourd	carcmoB0055
CmoCh16G004680	Cucumber (Chinese Long) v3	cmocucB0393