CmoCh04G007160 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G007160
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	BnaCnng70620D protein
Location	Cmo_Chr04 : 3560112 .. 3560748 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTGTCTTCGTCTTTGCCGAGTAAGTTTCTATTCTCCCTGTCCCTCCGATGCCAATCTCCACCGAATCTTCTACTCCCTCCTCCTCTTGCTTCATCAAATGCGCCACTCCGACGATTCCGAGTGTTCAACTCGTGTCGAAATCGGTGTCGGATCGGCTTCTCGGCAAGTTCTTTGACGCCTCGCAATTCGACTTCGATTACGAACAGAGTAGCTTGTGGTCTCCGCCGATTCCGCGGCGAGTTTTTTTGGATTCTCCGCTCGATGTTTGCTCCGGTTATGAGGTTCTCTCGAAGCTTGAGAAGGCGAAGACGGCATGGAGGAAATTCGTAATCTGTTTTAGAGTAAGTGCTCTCACGATCGCATTCTGATTTTACTCCGTGATTGCTGTGTTTCGTTTTCGTGATTCCGAACTCGAGTTGCTTTAATGTGAAAAAACCTGAGGCTGCTTTAGATTTTTTTGAGAAAATTTGAAGAAATTGCCTTCAATTTCCATAATGAACTTACTGGCAAAGAATTTTTAGTCATGAATCTGTTTCAGAGTAAGTGTATACGATCGCATTGTGATTTACTTTAGTGGTTGCTAGGTTTTCGTTTCTCTAGTTCGAAATCGATTTGCTGTAATGTGCAAGAACTGA

mRNA sequence

CTCTGTCTTCGTCTTTGCCGAGTAAGTTTCTATTCTCCCTGTCCCTCCGATGCCAATCTCCACCGAATCTTCTACTCCCTCCTCCTCTTGCTTCATCAAATGCGCCACTCCGACGATTCCGAGTGTTCAACTCGTGTCGAAATCGGTGTCGGATCGGCTTCTCGGCAAGTTCTTTGACGCCTCGCAATTCGACTTCGATTACGAACAGAGTAGCTTGTGGTCTCCGCCGATTCCGCGGCGAGTTTTTTTGGATTCTCCGCTCGATGTTTGCTCCGGTTATGAGGTTCTCTCGAAGCTTGAGAAGGCGAAGACGGCATGGAGGAAATTCGTAATCTGTTTTAGAATTTTTTTGAGAAAATTTGAAGAAATTGCCTTCAATTTCCATAATGAACTTACTGGCAAAGAATTTTTAGTCATGAATCTGTTTCAGATTCGAAATCGATTTGCTGTAATGTGCAAGAACTGA

Coding sequence (CDS)

ATGCCAATCTCCACCGAATCTTCTACTCCCTCCTCCTCTTGCTTCATCAAATGCGCCACTCCGACGATTCCGAGTGTTCAACTCGTGTCGAAATCGGTGTCGGATCGGCTTCTCGGCAAGTTCTTTGACGCCTCGCAATTCGACTTCGATTACGAACAGAGTAGCTTGTGGTCTCCGCCGATTCCGCGGCGAGTTTTTTTGGATTCTCCGCTCGATGTTTGCTCCGGTTATGAGGTTCTCTCGAAGCTTGAGAAGGCGAAGACGGCATGGAGGAAATTCGTAATCTGTTTTAGAATTTTTTTGAGAAAATTTGAAGAAATTGCCTTCAATTTCCATAATGAACTTACTGGCAAAGAATTTTTAGTCATGAATCTGTTTCAGATTCGAAATCGATTTGCTGTAATGTGCAAGAACTGA

Homology

[Close]

BLAST of CmoCh04G007160 vs. TrEMBL
Match: A0A0A0KVF5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G082960 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 3.1e-33
Identity = 73/100 (73.00%), Postives = 84/100 (84.00%), Query Frame = 1


Query: 1   MPISTESSTPSSSCFIKCATPTIPSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPP 60
           MPIS  SS+  SS F++C TPT P++Q+VSKS SDRLL KFFDAS+FDFDY QSSLWSPP
Sbjct: 1   MPISLHSSSSPSSSFLQCLTPTSPTIQIVSKSASDRLLAKFFDASKFDFDYLQSSLWSPP 60

Query: 61  IPRRVFLDSPLDVCSGYE-VLSKLEKAKTAWRKFVICFRI 100
           I RR+FLDSP DVCSG + VLSKLE AK AWRKF+ICFR+
Sbjct: 61  IQRRLFLDSPADVCSGSKVVLSKLENAKKAWRKFIICFRV 100

[Close]

BLAST of CmoCh04G007160 vs. TrEMBL
Match: A0A067KFA4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10567 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 2.9e-23
Identity = 58/98 (59.18%), Postives = 72/98 (73.47%), Query Frame = 1


Query: 2   PISTESSTPSSSCFIKCATPTIPSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPPI 61
           P  + SS+  SS  I     T PS+Q+VSKSVS+RLLGKFFDASQ+DFDYEQS LWSPPI
Sbjct: 6   PAGSYSSSSYSSSLI-----TTPSIQMVSKSVSERLLGKFFDASQYDFDYEQSGLWSPPI 65

Query: 62  PRRVFLDSPLDVCSGYEVLSKLEKAKTAWRKFVICFRI 100
           PRR+F+ S  ++CS  +  SK +KAK AWR+ + CF I
Sbjct: 66  PRRIFVPSTGNICSEDQFFSKFKKAKKAWRRRIACFNI 98

[Close]

BLAST of CmoCh04G007160 vs. TrEMBL
Match: A0A061F9F8_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_031878 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.6e-21
Identity = 60/99 (60.61%), Postives = 73/99 (73.74%), Query Frame = 1


Query: 1  MPISTESSTPSSSCFIKCATPTIPSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPP 60
          M IS  SS+P SS     ++ T PS+Q+VSK+VS+RLLGKFFDASQ+DFDYEQS LWSPP
Sbjct: 1  MAISESSSSPPSSP--GSSSLTSPSIQMVSKTVSERLLGKFFDASQYDFDYEQSGLWSPP 60

Query: 61 IPRRVFLDSPLDVCSGYEVLSKLEKAKTA--WRKFVICF 98
          + R VFL SP ++CS  E  SKL+KAK A  WR  + CF
Sbjct: 61 VRRSVFLTSPGNICSEDEFFSKLKKAKKACRWRLRIACF 97

[Close]

BLAST of CmoCh04G007160 vs. TrEMBL
Match: A0A067DQ60_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g036709mg PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 4.0e-20
Identity = 56/105 (53.33%), Postives = 70/105 (66.67%), Query Frame = 1


Query: 4   STESSTPSSSCFIKCATPTIPS------VQLVSKSVSDRLLGKFFDASQFDFDYEQSSLW 63
           S E      SC    + PT  +      VQ+VSKSVSDRLLGKFFDA Q+DFDYEQS LW
Sbjct: 7   SLEKINSCCSCESTSSLPTFSTTGSSTTVQMVSKSVSDRLLGKFFDALQYDFDYEQSGLW 66

Query: 64  SPPIPRRVFLDSPLDVCSGYEVLSKLEKAKTAWRKFVICFRIFLR 103
           SPP+PR+V+L+SP  +CS  E+ SKL++AK A R    CF I ++
Sbjct: 67  SPPVPRKVYLNSPGKMCSDDEMFSKLKRAKKACRCRFFCFNIVIK 111

[Close]

BLAST of CmoCh04G007160 vs. TrEMBL
Match: V4T630_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022947mg PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 4.0e-20
Identity = 56/105 (53.33%), Postives = 70/105 (66.67%), Query Frame = 1


Query: 4   STESSTPSSSCFIKCATPTIPS------VQLVSKSVSDRLLGKFFDASQFDFDYEQSSLW 63
           S E      SC    + PT  +      VQ+VSKSVSDRLLGKFFDA Q+DFDYEQS LW
Sbjct: 7   SLEKINSCCSCESTSSLPTFSTTGSSTTVQMVSKSVSDRLLGKFFDALQYDFDYEQSGLW 66

Query: 64  SPPIPRRVFLDSPLDVCSGYEVLSKLEKAKTAWRKFVICFRIFLR 103
           SPP+PR+V+L+SP  +CS  E+ SKL++AK A R    CF I ++
Sbjct: 67  SPPVPRKVYLNSPGKMCSDDEMFSKLKRAKKACRCRFFCFNIVIK 111

[Close]

BLAST of CmoCh04G007160 vs. NCBI nr
Match: gi|700198412|gb|KGN53570.1| (hypothetical protein Csa_4G082960 [Cucumis sativus])

HSP 1 Score: 149.4 bits (376), Expect = 4.5e-33
Identity = 73/100 (73.00%), Postives = 84/100 (84.00%), Query Frame = 1


Query: 1   MPISTESSTPSSSCFIKCATPTIPSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPP 60
           MPIS  SS+  SS F++C TPT P++Q+VSKS SDRLL KFFDAS+FDFDY QSSLWSPP
Sbjct: 1   MPISLHSSSSPSSSFLQCLTPTSPTIQIVSKSASDRLLAKFFDASKFDFDYLQSSLWSPP 60

Query: 61  IPRRVFLDSPLDVCSGYE-VLSKLEKAKTAWRKFVICFRI 100
           I RR+FLDSP DVCSG + VLSKLE AK AWRKF+ICFR+
Sbjct: 61  IQRRLFLDSPADVCSGSKVVLSKLENAKKAWRKFIICFRV 100

[Close]

BLAST of CmoCh04G007160 vs. NCBI nr
Match: gi|643725940|gb|KDP34787.1| (hypothetical protein JCGZ_10567 [Jatropha curcas])

HSP 1 Score: 116.3 bits (290), Expect = 4.2e-23
Identity = 58/98 (59.18%), Postives = 72/98 (73.47%), Query Frame = 1


Query: 2   PISTESSTPSSSCFIKCATPTIPSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPPI 61
           P  + SS+  SS  I     T PS+Q+VSKSVS+RLLGKFFDASQ+DFDYEQS LWSPPI
Sbjct: 6   PAGSYSSSSYSSSLI-----TTPSIQMVSKSVSERLLGKFFDASQYDFDYEQSGLWSPPI 65

Query: 62  PRRVFLDSPLDVCSGYEVLSKLEKAKTAWRKFVICFRI 100
           PRR+F+ S  ++CS  +  SK +KAK AWR+ + CF I
Sbjct: 66  PRRIFVPSTGNICSEDQFFSKFKKAKKAWRRRIACFNI 98

[Close]

BLAST of CmoCh04G007160 vs. NCBI nr
Match: gi|590610430|ref|XP_007021812.1| (Uncharacterized protein TCM_031878 [Theobroma cacao])

HSP 1 Score: 110.5 bits (275), Expect = 2.3e-21
Identity = 60/99 (60.61%), Postives = 73/99 (73.74%), Query Frame = 1


Query: 1  MPISTESSTPSSSCFIKCATPTIPSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPP 60
          M IS  SS+P SS     ++ T PS+Q+VSK+VS+RLLGKFFDASQ+DFDYEQS LWSPP
Sbjct: 1  MAISESSSSPPSSP--GSSSLTSPSIQMVSKTVSERLLGKFFDASQYDFDYEQSGLWSPP 60

Query: 61 IPRRVFLDSPLDVCSGYEVLSKLEKAKTA--WRKFVICF 98
          + R VFL SP ++CS  E  SKL+KAK A  WR  + CF
Sbjct: 61 VRRSVFLTSPGNICSEDEFFSKLKKAKKACRWRLRIACF 97

[Close]

BLAST of CmoCh04G007160 vs. NCBI nr
Match: gi|731431929|ref|XP_010644110.1| (PREDICTED: uncharacterized protein LOC104877493 [Vitis vinifera])

HSP 1 Score: 107.1 bits (266), Expect = 2.5e-20
Identity = 62/103 (60.19%), Postives = 72/103 (69.90%), Query Frame = 1


Query: 1   MPISTESSTPSSSCFIKCATPTIPSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPP 60
           MP S  SS P+SS     ++P IPSVQ+VSKS SDRLLGKFFDASQFDFDYEQS LWSPP
Sbjct: 1   MPTSGLSS-PASSSSPGSSSPCIPSVQIVSKSASDRLLGKFFDASQFDFDYEQSGLWSPP 60

Query: 61  IPRRVFLDSPLDVCSGYEVLSKLE---KAKTAWRKFVICFRIF 101
           + RR FL S  +  SG E+L+KL+   K    WR+F  CF  F
Sbjct: 61  VQRRAFLTSSENCGSGGEMLAKLKSNVKRAQLWRRF-FCFYAF 101

[Close]

BLAST of CmoCh04G007160 vs. NCBI nr
Match: gi|567899920|ref|XP_006442448.1| (hypothetical protein CICLE_v10022947mg [Citrus clementina])

HSP 1 Score: 105.9 bits (263), Expect = 5.7e-20
Identity = 56/105 (53.33%), Postives = 70/105 (66.67%), Query Frame = 1


Query: 4   STESSTPSSSCFIKCATPTIPS------VQLVSKSVSDRLLGKFFDASQFDFDYEQSSLW 63
           S E      SC    + PT  +      VQ+VSKSVSDRLLGKFFDA Q+DFDYEQS LW
Sbjct: 7   SLEKINSCCSCESTSSLPTFSTTGSSTTVQMVSKSVSDRLLGKFFDALQYDFDYEQSGLW 66

Query: 64  SPPIPRRVFLDSPLDVCSGYEVLSKLEKAKTAWRKFVICFRIFLR 103
           SPP+PR+V+L+SP  +CS  E+ SKL++AK A R    CF I ++
Sbjct: 67  SPPVPRKVYLNSPGKMCSDDEMFSKLKRAKKACRCRFFCFNIVIK 111

The following BLAST results are available for this feature:

BLAST of CmoCh04G007160 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh04G007160 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVF5_CUCSA	3.1e-33	73.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G082960 PE=4 SV=1	[more]
A0A067KFA4_JATCU	2.9e-23	59.18	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10567 PE=4 SV=1	[more]
A0A061F9F8_THECC	1.6e-21	60.61	Uncharacterized protein OS=Theobroma cacao GN=TCM_031878 PE=4 SV=1	[more]
A0A067DQ60_CITSI	4.0e-20	53.33	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g036709mg PE=4 SV=1	[more]
V4T630_9ROSI	4.0e-20	53.33	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022947mg PE=4 SV=1	[more]

BLAST of CmoCh04G007160 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh04G007160 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198412\|gb\|KGN53570.1\|	4.5e-33	73.00	hypothetical protein Csa_4G082960 [Cucumis sativus]	[more]
gi\|643725940\|gb\|KDP34787.1\|	4.2e-23	59.18	hypothetical protein JCGZ_10567 [Jatropha curcas]	[more]
gi\|590610430\|ref\|XP_007021812.1\|	2.3e-21	60.61	Uncharacterized protein TCM_031878 [Theobroma cacao]	[more]
gi\|731431929\|ref\|XP_010644110.1\|	2.5e-20	60.19	PREDICTED: uncharacterized protein LOC104877493 [Vitis vinifera]	[more]
gi\|567899920\|ref\|XP_006442448.1\|	5.7e-20	53.33	hypothetical protein CICLE_v10022947mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G007160.1	CmoCh04G007160.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34287	FAMILY NOT NAMED	coord: 20..97 score: 1.9
None	No IPR available	PANTHER	PTHR34287:SF1	SUBFAMILY NOT NAMED	coord: 20..97 score: 1.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G007160	CmaCh04G006700	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G007160	Cla005374	Watermelon (97103) v1	cmowmB681
CmoCh04G007160	Csa4G082960	Cucumber (Chinese Long) v2	cmocuB712
CmoCh04G007160	ClCG07G010220	Watermelon (Charleston Gray)	cmowcgB674
CmoCh04G007160	Lsi07G002800	Bottle gourd (USVL1VR-Ls)	cmolsiB696
CmoCh04G007160	Cp4.1LG01g00660	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G007160	Cp4.1LG14g03550	Cucurbita pepo (Zucchini)	cmocpeB669
CmoCh04G007160	CsaV3_4G008110	Cucumber (Chinese Long) v3	cmocucB0842
CmoCh04G007160	Cla97C07G136900	Watermelon (97103) v2	cmowmbB752
CmoCh04G007160	Bhi01G002485	Wax gourd	cmowgoB0855
CmoCh04G007160	CsGy4G007760	Cucumber (Gy14) v2	cgybcmoB529
CmoCh04G007160	Carg13086	Silver-seed gourd	carcmoB0058
CmoCh04G007160	Carg11365	Silver-seed gourd	carcmoB0901

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh04G007160	CmoCh16G004680	Cucurbita moschata (Rifu)	cmocmoB287

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G007160	Cucurbita maxima (Rimu)	cmacmoB339
CmoCh04G007160	Melon (DHL92) v3.5.1	cmomeB691
CmoCh04G007160	Bottle gourd (USVL1VR-Ls)	cmolsiB689
CmoCh04G007160	Melon (DHL92) v3.6.1	cmomedB785
CmoCh04G007160	Wax gourd	cmowgoB0844
CmoCh04G007160	Cucumber (Gy14) v1	cgycmoB0756