Cp4.1LG13g04980 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG13g04980
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Zinc finger CCCH domain-containing 15
Location	Cp4.1LG13 : 5678054 .. 5679707 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATAGGGAAGTATACGAATATATGGATTTTTTACGTCTCTCCGATTCCCCGCGAATAGAACAGAGGTTGAAGCAGCAATTCATTAGGAGTCTGCAAAATGGGGGCAGAAGAAGCAGCCATGGAACAAGAGAAGCTCGCATCTCGGAATCCAAGGACGATTCCGATCACAGAGACTCAGTTCCTATCCTGGAAGAGGCAGAAGGTACTTTCCCTTCTCCATCGATCTATCTCAGGCTTCGCTTAGGGTTTCTTTTAGGTGTCAATTACTTGTATTTCGTGCCAAAGCCTGTAAAATTAGAGAATTAGGGCTGCGTGAGATGATTATTGTGAATTTGAAAACCTCTAGGATTCATTCAGTTTAGAAAGGCATTGAAGAATTTGCTGAATAGTTTCTTGCATACATCGCATGCCAAACATCACTGTCATTTGACATAAAACAATGAATGAAGATCATTGAATGAAGCCACGGTATTTAACCTTCCCAAATAAGGCAATCAAGCAAAGAACCTAATCTTCTGTAGATTGTTACAGATTATGGAGAGGAATTAGGGGACTGGAGGATTGGGTTCAGACAGTATACAGGAAAGAAGAAACTTCATAGAGAACATTCCTGAAGGCTCAAGAGTCCATTTATGACGATCGTTTAAAGTTGGGGATAGGCAAACTTCTAGTGCAACAAAAAGGAGATTAGCCAAATCTTGAGATTCATGATCATTAAGGGGCTTCTAAAATGAAAAATCATAATCTTTAAGGAGAGTAGAAGAACTGTGACTATAAGGATTAAAATAGAATGGAAAAGCACCTCATTTTGAAGGGAAAATAAAGTGGGGTAGAACAATTTGGAAAGAATTATTTCCGATCCTGAAGTCCTACGAGAAATGAACATGAGTCCCATTTCAGGTGGAAATTTTAATGAAATTGTTAAGGAAGGGGATTATTGAAATTCTGCTAGAAAATACTTGCAATATGTAAGCGGCTATCATTAGATTTGGAGGCTATTAATGTTCTAAATCACGTGTTTCAACAATCGACAGTGACACGGAATGCAGGTTCGATTTTGTTCGAGTCAACTGACCTGAAAGGAAACTCAACCATTCCACCAGTCTTTTATAAGGCGATTTGTGTGTCACTGAAGTCTGAAGCTAATGAGTTGTTGATGTTTGACATCTATCTCCAACCATCTTCTCTTATTTGCAGGATGCTGAGGCATCTGCAAAGAGAGATGAAACAGCAAGGAAGCGTGCGGATGATATAGCCTCAGGAGCAGTGCAAATGAATGGGCGAGAGCTTTTCTTGCACCAACCATGGGTTTTTGATAATTCTCAATATTGAGGTTGGTTTTAGATGGAAACATTGTGGTGCTACGCTTTGTGGTCTCTTGAGATATTGGTCTTTTACTTTAAAATGTTACCTTGTATTGTATTCGACTTTCATTGCTCATACGAGTCGGTAGTCCTTCAGCCCAAAATTTTTATTCTCTTTGGCCATAGTAGCCGTATATGAATCTGTGTAGGTTTCATGCATGGTAAAATCCGTACAAATTTTTTTGAATTGGACCAAGCTTTCAAAGCCATTGATTGTCCTATGCTGTTGGCCTAAAACGACTTTATGGAATGCATTTGTCTTCTGCAGTTTACAAATCACGTGTAAATAA

mRNA sequence

AATAGGGAAGTATACGAATATATGGATTTTTTACGTCTCTCCGATTCCCCGCGAATAGAACAGAGGTTGAAGCAGCAATTCATTAGGAGTCTGCAAAATGGGGGCAGAAGAAGCAGCCATGGAACAAGAGAAGCTCGCATCTCGGAATCCAAGGACGATTCCGATCACAGAGACTCAGTTCCTATCCTGGAAGAGGCAGAAGGATGCTGAGGCATCTGCAAAGAGAGATGAAACAGCAAGGAAGCGTGCGGATGATATAGCCTCAGGAGCAGTGCAAATGAATGGGCGAGAGCTTTTCTTGCACCAACCATGGGTTTTTGATAATTCTCAATATTGAGGTTGGTTTTAGATGGAAACATTGTGGTGCTACGCTTTGTGGTCTCTTGAGATATTGGTCTTTTACTTTAAAATGTTACCTTGTATTGTATTCGACTTTCATTGCTCATACGAGTCGGTAGTCCTTCAGCCCAAAATTTTTATTCTCTTTGGCCATAGTAGCCGTATATGAATCTGTGTAGGTTTCATGCATGGTAAAATCCGTACAAATTTTTTTGAATTGGACCAAGCTTTCAAAGCCATTGATTGTCCTATGCTGTTGGCCTAAAACGACTTTATGGAATGCATTTGTCTTCTGCAGTTTACAAATCACGTGTAAATAA

Coding sequence (CDS)

ATGGGGGCAGAAGAAGCAGCCATGGAACAAGAGAAGCTCGCATCTCGGAATCCAAGGACGATTCCGATCACAGAGACTCAGTTCCTATCCTGGAAGAGGCAGAAGGATGCTGAGGCATCTGCAAAGAGAGATGAAACAGCAAGGAAGCGTGCGGATGATATAGCCTCAGGAGCAGTGCAAATGAATGGGCGAGAGCTTTTCTTGCACCAACCATGGGTTTTTGATAATTCTCAATATTGA

Protein sequence

MGAEEAAMEQEKLASRNPRTIPITETQFLSWKRQKDAEASAKRDETARKRADDIASGAVQMNGRELFLHQPWVFDNSQY

Homology

[Close]

BLAST of Cp4.1LG13g04980 vs. TrEMBL
Match: A0A0A0KN87_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G407070 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 2.4e-30
Identity = 70/80 (87.50%), Postives = 75/80 (93.75%), Query Frame = 1


Query: 1  MGAEEAAMEQE-KLASRNPRTIPITETQFLSWKRQKDAEASAKRDETARKRADDIASGAV 60
          MGAEEAAMEQE  L+S NPRT+PITE QFLSWKR+KDAEASAKR+ETARKRA+DIA GAV
Sbjct: 1  MGAEEAAMEQEKNLSSHNPRTVPITEAQFLSWKRRKDAEASAKREETARKRAEDIALGAV 60

Query: 61 QMNGRELFLHQPWVFDNSQY 80
          QMNGRELFLHQPWVFDNSQY
Sbjct: 61 QMNGRELFLHQPWVFDNSQY 80

[Close]

BLAST of Cp4.1LG13g04980 vs. TrEMBL
Match: A0A061FNI6_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_047076 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 2.4e-22
Identity = 56/79 (70.89%), Postives = 65/79 (82.28%), Query Frame = 1


Query: 1  MGAEEAAMEQEKLASRNPRTIPITETQFLSWKRQKDAEASAKRDETARKRADDIASGAVQ 60
          MGAEE    ++K     PRT PITE+QFL+WK QKDA+ASAK+ E ARKRA+DIA+G VQ
Sbjct: 1  MGAEE----EQKQEKEQPRTNPITESQFLAWKGQKDADASAKKAEAARKRAEDIAAGTVQ 60

Query: 61 MNGRELFLHQPWVFDNSQY 80
          MNGRELFLH+PWVFDNSQY
Sbjct: 61 MNGRELFLHEPWVFDNSQY 75

[Close]

BLAST of Cp4.1LG13g04980 vs. TrEMBL
Match: A0A0D2SMJ9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G044500 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 7.0e-22
Identity = 55/79 (69.62%), Postives = 64/79 (81.01%), Query Frame = 1


Query: 1  MGAEEAAMEQEKLASRNPRTIPITETQFLSWKRQKDAEASAKRDETARKRADDIASGAVQ 60
          MGAEE   +Q K  +  P   PITE+QFL+WKRQKDA+ SAK+ E ARKRA+DIA+G VQ
Sbjct: 1  MGAEE---DQRKQENEQPTNNPITESQFLAWKRQKDADTSAKKAEAARKRAEDIAAGTVQ 60

Query: 61 MNGRELFLHQPWVFDNSQY 80
          MNGRELFLH+PWVFDNSQY
Sbjct: 61 MNGRELFLHEPWVFDNSQY 76

[Close]

BLAST of Cp4.1LG13g04980 vs. TrEMBL
Match: A0A0B0NU02_GOSAR (Zinc finger CCCH domain-containing 15 OS=Gossypium arboreum GN=F383_21880 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 7.8e-21
Identity = 55/79 (69.62%), Postives = 62/79 (78.48%), Query Frame = 1


Query: 1  MGAEEAAMEQEKLASRNPRTIPITETQFLSWKRQKDAEASAKRDETARKRADDIASGAVQ 60
          M AEE   EQ K  +  P   PIT +QFL+WKRQKDAE SAK+ E ARKRA+DIA+G VQ
Sbjct: 1  MRAEE---EQRKQENEQPTNNPITVSQFLAWKRQKDAETSAKKAEAARKRAEDIAAGTVQ 60

Query: 61 MNGRELFLHQPWVFDNSQY 80
          MNGRELFLH+PWVFDNSQY
Sbjct: 61 MNGRELFLHEPWVFDNSQY 76

[Close]

BLAST of Cp4.1LG13g04980 vs. TrEMBL
Match: F6H0V1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g04880 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 3.0e-20
Identity = 50/79 (63.29%), Postives = 65/79 (82.28%), Query Frame = 1


Query: 1   MGAEEAAMEQEKLASRNPRTIPITETQFLSWKRQKDAEASAKRDETARKRADDIASGAVQ 60
           MGAEE  +++ + +   P   P+++ QFLSWKRQKDA+ SA+RDE ARKR +DIA+GAVQ
Sbjct: 76  MGAEEEKVQENEKS--RPTQNPMSQAQFLSWKRQKDADVSARRDEAARKRVEDIAAGAVQ 135

Query: 61  MNGRELFLHQPWVFDNSQY 80
           MNGRELFLH+PWVFDN++Y
Sbjct: 136 MNGRELFLHEPWVFDNTRY 152

[Close]

BLAST of Cp4.1LG13g04980 vs. TAIR10
Match: AT1G22140.1 (AT1G22140.1 unknown protein)

HSP 1 Score: 87.0 bits (214), Expect = 5.5e-18
Identity = 41/62 (66.13%), Postives = 50/62 (80.65%), Query Frame = 1


Query: 18 PRTIPITETQFLSWKRQKDAEASAKRDETARKRADDIASGAVQMNGRELFLHQPWVFDNS 77
          P  I I++ QFL+WKRQKDAE  AK+ E ARKR +DIASG V MNGRELFLH+PWVFD++
Sbjct: 11 PTQISISKDQFLAWKRQKDAELLAKQAEAARKRQEDIASGRVPMNGRELFLHEPWVFDDT 70

Query: 78 QY 80
           +
Sbjct: 71 HH 72

[Close]

BLAST of Cp4.1LG13g04980 vs. NCBI nr
Match: gi|659121074|ref|XP_008460489.1| (PREDICTED: uncharacterized protein LOC103499290 isoform X2 [Cucumis melo])

HSP 1 Score: 144.4 bits (363), Expect = 8.2e-32
Identity = 71/79 (89.87%), Postives = 74/79 (93.67%), Query Frame = 1


Query: 1  MGAEEAAMEQEKLASRNPRTIPITETQFLSWKRQKDAEASAKRDETARKRADDIASGAVQ 60
          MG EEAAMEQEKL+  NPRT+PITE QFLSWKRQKDAEASAKRDETARKRA+DIA GAVQ
Sbjct: 1  MGDEEAAMEQEKLSCNNPRTVPITEAQFLSWKRQKDAEASAKRDETARKRAEDIALGAVQ 60

Query: 61 MNGRELFLHQPWVFDNSQY 80
          MNGRELFLHQPWVFDNSQY
Sbjct: 61 MNGRELFLHQPWVFDNSQY 79

[Close]

BLAST of Cp4.1LG13g04980 vs. NCBI nr
Match: gi|449445110|ref|XP_004140316.1| (PREDICTED: zinc finger CCCH domain-containing protein 15 homolog [Cucumis sativus])

HSP 1 Score: 139.0 bits (349), Expect = 3.5e-30
Identity = 70/80 (87.50%), Postives = 75/80 (93.75%), Query Frame = 1


Query: 1  MGAEEAAMEQE-KLASRNPRTIPITETQFLSWKRQKDAEASAKRDETARKRADDIASGAV 60
          MGAEEAAMEQE  L+S NPRT+PITE QFLSWKR+KDAEASAKR+ETARKRA+DIA GAV
Sbjct: 1  MGAEEAAMEQEKNLSSHNPRTVPITEAQFLSWKRRKDAEASAKREETARKRAEDIALGAV 60

Query: 61 QMNGRELFLHQPWVFDNSQY 80
          QMNGRELFLHQPWVFDNSQY
Sbjct: 61 QMNGRELFLHQPWVFDNSQY 80

[Close]

BLAST of Cp4.1LG13g04980 vs. NCBI nr
Match: gi|590598327|ref|XP_007018863.1| (Uncharacterized protein isoform 1 [Theobroma cacao])

HSP 1 Score: 112.5 bits (280), Expect = 3.5e-22
Identity = 56/79 (70.89%), Postives = 65/79 (82.28%), Query Frame = 1


Query: 1  MGAEEAAMEQEKLASRNPRTIPITETQFLSWKRQKDAEASAKRDETARKRADDIASGAVQ 60
          MGAEE    ++K     PRT PITE+QFL+WK QKDA+ASAK+ E ARKRA+DIA+G VQ
Sbjct: 1  MGAEE----EQKQEKEQPRTNPITESQFLAWKGQKDADASAKKAEAARKRAEDIAAGTVQ 60

Query: 61 MNGRELFLHQPWVFDNSQY 80
          MNGRELFLH+PWVFDNSQY
Sbjct: 61 MNGRELFLHEPWVFDNSQY 75

[Close]

BLAST of Cp4.1LG13g04980 vs. NCBI nr
Match: gi|823238864|ref|XP_012452086.1| (PREDICTED: zinc finger CCCH domain-containing protein 15 homolog [Gossypium raimondii])

HSP 1 Score: 110.9 bits (276), Expect = 1.0e-21
Identity = 55/79 (69.62%), Postives = 64/79 (81.01%), Query Frame = 1


Query: 1  MGAEEAAMEQEKLASRNPRTIPITETQFLSWKRQKDAEASAKRDETARKRADDIASGAVQ 60
          MGAEE   +Q K  +  P   PITE+QFL+WKRQKDA+ SAK+ E ARKRA+DIA+G VQ
Sbjct: 1  MGAEE---DQRKQENEQPTNNPITESQFLAWKRQKDADTSAKKAEAARKRAEDIAAGTVQ 60

Query: 61 MNGRELFLHQPWVFDNSQY 80
          MNGRELFLH+PWVFDNSQY
Sbjct: 61 MNGRELFLHEPWVFDNSQY 76

[Close]

BLAST of Cp4.1LG13g04980 vs. NCBI nr
Match: gi|720042261|ref|XP_010269180.1| (PREDICTED: zinc finger CCCH domain-containing protein 15 homolog [Nelumbo nucifera])

HSP 1 Score: 108.2 bits (269), Expect = 6.5e-21
Identity = 54/79 (68.35%), Postives = 63/79 (79.75%), Query Frame = 1


Query: 1  MGAEEAAMEQEKLASRNPRTIPITETQFLSWKRQKDAEASAKRDETARKRADDIASGAVQ 60
          MGAEE   E   L SR PRT P+TE QFLSWKRQKDA+ +++R+  ARKRA+DIA+G VQ
Sbjct: 1  MGAEEEQKESGTLESR-PRTQPMTEAQFLSWKRQKDADVASRREAAARKRAEDIAAGTVQ 60

Query: 61 MNGRELFLHQPWVFDNSQY 80
          MNGRELFLH+PWVFDN  Y
Sbjct: 61 MNGRELFLHEPWVFDNDCY 78

The following BLAST results are available for this feature:

BLAST of Cp4.1LG13g04980 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG13g04980 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KN87_CUCSA	2.4e-30	87.50	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G407070 PE=4 SV=1	[more]
A0A061FNI6_THECC	2.4e-22	70.89	Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_047076 PE=4 SV=1	[more]
A0A0D2SMJ9_GOSRA	7.0e-22	69.62	Uncharacterized protein OS=Gossypium raimondii GN=B456_010G044500 PE=4 SV=1	[more]
A0A0B0NU02_GOSAR	7.8e-21	69.62	Zinc finger CCCH domain-containing 15 OS=Gossypium arboreum GN=F383_21880 PE=4 S...	[more]
F6H0V1_VITVI	3.0e-20	63.29	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g04880 PE=4 SV=...	[more]

BLAST of Cp4.1LG13g04980 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G22140.1	5.5e-18	66.13	unknown protein	[more]

BLAST of Cp4.1LG13g04980 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659121074\|ref\|XP_008460489.1\|	8.2e-32	89.87	PREDICTED: uncharacterized protein LOC103499290 isoform X2 [Cucumis melo]	[more]
gi\|449445110\|ref\|XP_004140316.1\|	3.5e-30	87.50	PREDICTED: zinc finger CCCH domain-containing protein 15 homolog [Cucumis sativu...	[more]
gi\|590598327\|ref\|XP_007018863.1\|	3.5e-22	70.89	Uncharacterized protein isoform 1 [Theobroma cacao]	[more]
gi\|823238864\|ref\|XP_012452086.1\|	1.0e-21	69.62	PREDICTED: zinc finger CCCH domain-containing protein 15 homolog [Gossypium raim...	[more]
gi\|720042261\|ref\|XP_010269180.1\|	6.5e-21	68.35	PREDICTED: zinc finger CCCH domain-containing protein 15 homolog [Nelumbo nucife...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG13g04980.1	Cp4.1LG13g04980.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR12681	ZINC FINGER-CONTAINING PROTEIN P48ZNF	coord: 1..79 score: 1.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG13g04980	Cucsa.034550	Cucumber (Gy14) v1	cgycpeB0017
Cp4.1LG13g04980	CmaCh15G007260	Cucurbita maxima (Rimu)	cmacpeB305
Cp4.1LG13g04980	CmaCh04G023140	Cucurbita maxima (Rimu)	cmacpeB705
Cp4.1LG13g04980	CmoCh04G024200	Cucurbita moschata (Rifu)	cmocpeB657
Cp4.1LG13g04980	CmoCh15G007490	Cucurbita moschata (Rifu)	cmocpeB268
Cp4.1LG13g04980	Cla002152	Watermelon (97103) v1	cpewmB176
Cp4.1LG13g04980	Csa5G407070	Cucumber (Chinese Long) v2	cpecuB187
Cp4.1LG13g04980	MELO3C022803	Melon (DHL92) v3.5.1	cpemeB158
Cp4.1LG13g04980	ClCG03G008950	Watermelon (Charleston Gray)	cpewcgB170
Cp4.1LG13g04980	CSPI05G14620	Wild cucumber (PI 183967)	cpecpiB188
Cp4.1LG13g04980	Lsi09G009570	Bottle gourd (USVL1VR-Ls)	cpelsiB130
Cp4.1LG13g04980	MELO3C022803.2	Melon (DHL92) v3.6.1	cpemedB185
Cp4.1LG13g04980	CsaV3_5G023730	Cucumber (Chinese Long) v3	cpecucB0225
Cp4.1LG13g04980	Bhi12G001100	Wax gourd	cpewgoB0218
Cp4.1LG13g04980	CsGy5G014550	Cucumber (Gy14) v2	cgybcpeB609
Cp4.1LG13g04980	Carg01482	Silver-seed gourd	carcpeB1157
Cp4.1LG13g04980	Carg18249	Silver-seed gourd	carcpeB0746

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG13g04980	Cp4.1LG01g20130	Cucurbita pepo (Zucchini)	cpecpeB199

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG13g04980	Watermelon (97103) v1	cpewmB175