CmoCh04G024200 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G024200
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Zinc finger CCCH domain-containing 15
Location	Cmo_Chr04 : 17972986 .. 17975289 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGTTTAAATTTTACACTCTCTCCATCTCGAATATAACAGAGGTTGAAGCAGCAATCCATTGGAGAGGGGCTATCAAATCCAGGAATCTGATCCACGCTCAACAAAATGGGGGCAGAAGAAGCGGTTGTGGAGCGAGAGAAGCTCTCGTCTCATGATCCGAGCGCGAATCCCATCACGGAGGCTCAGTTCCTATCGTGGAAGCGCCACAAGGTACTTTCCCTTCTTCTTCTTCTTCATCAATCTCTTCCAAGCTTTTCTTTGGCCGCTTTCCATTTCTGCTCTTTGATGTGCGATTGATCTGTATGAGTTCTTTTAGGTGCCGATTTCTTGTATTTCCTGCCAAATCAGTGAAATTCGAGAATTAGGGTTGCATAGATTGGGCGAGTTGTTTGAAAATTGAAATTATCACAATTTTAAATCTCAAGGATTCGTTCAATTAGGATGGTATTCAGGAATAGTTTCCTCTGTTGTGCGAAGATGAGGCTTAAATTTTGGGATTGTAACATGTATGAATGTACTTTATCTGGCTCGTGCCAAATAGACCTGAGGCTGAGACTGGACTTCTAGTCGATTGAGCTATACTTAGGTTGACAGAACGATTGACGATATGTAACGGACCAAAGCAAACAATATCTATTAGCGGTAGGCTTGAGCTATTACAAATGGTATCAGAGCTTCTAGTCGATTGAGCTATACTTAGGTTGACAGAACGATTGACGATATGTAACGGACCAAAGCAAACAATATCTATTAGCGGTAGGCTTGAGCTATTACAAATGGTATCAGAGCTTCTAGTCGATTGAGCTATACTTAGGTTGACAGAACGATTGACGATATGTAACGGACCAAAGCAAACAATATCTATTAGCGGTAGGCTTGAGCTATTACAAATGGTATCAGAGCTTCTAGTCGATTGAGCTATACTTAGGTTGACAGAACGATTGACGATATGTAACGGACCAAAGCAAACAATATCTATTAGCGGTAGGCTTGAGCTATTACAAATGGTATCAGAGCTTCTAGTCGATTGAGCTATACTTAGGTTGACAGAACGATTGACGATATGTAACGGACCAAAGCAAACAATATCTATTAGCGGTAGGCTTGAGCTATTACAAATGGTATCAGAGCCAGACACTGGACAGTATGCCTGCGAGGACTCTATGATCCTAAGAGGGGTGGATTGTGAGATCCTACATCTATTGGAGAGGGGAACAAAACATTCCCTATAAGAGTGTGGAAATCTCTCCCTAGCAGACACATTTTAAAATTGTGAGGCTGACAACGATACGATACGTAACAATATCTGCTAGCGGTAGGCTTGAGCTTAGCTATCTTGAAATTATAAGGCTATTAACGTTCTAAACTCACATGCTTCACAATTGATTGTCAGTGGCAGAAACACAGGTTGGTTCTTGTACGTTCAAGTTAACTAATCACTGAACGGCAAAGAACCTGAACCATTCCACTAGTCAATTATGAGGCAATTTCTGCATCAGTGACGTAAATGAGTTGTGTTGCTGTTCGACATTTATCTCCAACTATCTCCTCTTATTTGCAGGATGCCGAGGCATCTGCTAAAAGAGATGAAACAGCAAGGAAGCGTGCGGAGGATATAGCCTCAGGAGCAGTGCAAATGAATGGGCGAGAGCTTTTCTTGCACCAACCGTGGGTTTTTGACAACACTCAATATTGAGGTTGGTGTTTTAGTACCACTTTTTGTTGTTTCTTGAGAAATGTGTCTGTCCTTTAAAATGCTACCTTGTATCTTAATCAGCATATCCTTCATACAAAGTATTAGTTCTTACGCCCAAAATGCTACCCTCATATATGAATCTGTGCAAAAGGAATGACTTGACCCAATTGGTTCTAGACAAAGATGTATATGCAAATATAGGCGCTAATTTGTCCTATGCTGTTAGCCTCATATGAACTTTATGATATGCATTTGTCTTCTCTAGTTTACAAATCACATGTTAACAAAATGTTGTGTTTTTTCCTTTACTAGGTCCTTACATGATGAAATGTTTTTCATGTGGGAATAAAAATCATGATGTGTAGTGTCCATTGTTATAGGCGCTACTTTACTTAGTGCAATCATGCGTACCCAAGTGTAACGATTCGATTTTCTTTTGTAAACGTACTGGTCTAAGTTTAGCTTACTTATAAATTGTTTTGTAATTTAAAAACAAATGAAAGAATACCCATATATAGCAAAGTAAAATCATCTTCTAGATATCCATTTAAATGATTTTTAGAATGCTTGTAATTTAACTAAATAATTCAATAATGCAATTTTCAAT

mRNA sequence

TAGTTTAAATTTTACACTCTCTCCATCTCGAATATAACAGAGGTTGAAGCAGCAATCCATTGGAGAGGGGCTATCAAATCCAGGAATCTGATCCACGCTCAACAAAATGGGGGCAGAAGAAGCGGTTGTGGAGCGAGAGAAGCTCTCGTCTCATGATCCGAGCGCGAATCCCATCACGGAGGCTCAGTTCCTATCGTGGAAGCGCCACAAGGATGCCGAGGCATCTGCTAAAAGAGATGAAACAGCAAGGAAGCGTGCGGAGGATATAGCCTCAGGAGCAGTGCAAATGAATGGGCGAGAGCTTTTCTTGCACCAACCGTGGGTCCTTACATGATGAAATGTTTTTCATGTGGGAATAAAAATCATGATGTGTAGTGTCCATTGTTATAGGCGCTACTTTACTTAGTGCAATCATGCGTACCCAAGTGTAACGATTCGATTTTCTTTTGTAAACGTACTGGTCTAAGTTTAGCTTACTTATAAATTGTTTTGTAATTTAAAAACAAATGAAAGAATACCCATATATAGCAAAGTAAAATCATCTTCTAGATATCCATTTAAATGATTTTTAGAATGCTTGTAATTTAACTAAATAATTCAATAATGCAATTTTCAAT

Coding sequence (CDS)

ATGGGGGCAGAAGAAGCGGTTGTGGAGCGAGAGAAGCTCTCGTCTCATGATCCGAGCGCGAATCCCATCACGGAGGCTCAGTTCCTATCGTGGAAGCGCCACAAGGATGCCGAGGCATCTGCTAAAAGAGATGAAACAGCAAGGAAGCGTGCGGAGGATATAGCCTCAGGAGCAGTGCAAATGAATGGGCGAGAGCTTTTCTTGCACCAACCGTGGGTCCTTACATGA

Homology

[Close]

BLAST of CmoCh04G024200 vs. TrEMBL
Match: A0A0A0KN87_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G407070 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 4.9e-25
Identity = 63/74 (85.14%), Postives = 67/74 (90.54%), Query Frame = 1


Query: 1  MGAEEAVVEREK-LSSHDPSANPITEAQFLSWKRHKDAEASAKRDETARKRAEDIASGAV 60
          MGAEEA +E+EK LSSH+P   PITEAQFLSWKR KDAEASAKR+ETARKRAEDIA GAV
Sbjct: 1  MGAEEAAMEQEKNLSSHNPRTVPITEAQFLSWKRRKDAEASAKREETARKRAEDIALGAV 60

Query: 61 QMNGRELFLHQPWV 74
          QMNGRELFLHQPWV
Sbjct: 61 QMNGRELFLHQPWV 74

[Close]

BLAST of CmoCh04G024200 vs. TrEMBL
Match: F6H0V1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g04880 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 5.3e-19
Identity = 50/73 (68.49%), Postives = 60/73 (82.19%), Query Frame = 1


Query: 1   MGAEEAVVEREKLSSHDPSANPITEAQFLSWKRHKDAEASAKRDETARKRAEDIASGAVQ 60
           MGAEE  V+  + S   P+ NP+++AQFLSWKR KDA+ SA+RDE ARKR EDIA+GAVQ
Sbjct: 76  MGAEEEKVQENEKSR--PTQNPMSQAQFLSWKRQKDADVSARRDEAARKRVEDIAAGAVQ 135

Query: 61  MNGRELFLHQPWV 74
           MNGRELFLH+PWV
Sbjct: 136 MNGRELFLHEPWV 146

[Close]

BLAST of CmoCh04G024200 vs. TrEMBL
Match: A0A0D2SMJ9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G044500 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.0e-18
Identity = 49/73 (67.12%), Postives = 59/73 (80.82%), Query Frame = 1


Query: 1  MGAEEAVVEREKLSSHDPSANPITEAQFLSWKRHKDAEASAKRDETARKRAEDIASGAVQ 60
          MGAEE   ++ K  +  P+ NPITE+QFL+WKR KDA+ SAK+ E ARKRAEDIA+G VQ
Sbjct: 1  MGAEE---DQRKQENEQPTNNPITESQFLAWKRQKDADTSAKKAEAARKRAEDIAAGTVQ 60

Query: 61 MNGRELFLHQPWV 74
          MNGRELFLH+PWV
Sbjct: 61 MNGRELFLHEPWV 70

[Close]

BLAST of CmoCh04G024200 vs. TrEMBL
Match: B9RJF6_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1033830 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 5.9e-18
Identity = 50/73 (68.49%), Postives = 60/73 (82.19%), Query Frame = 1


Query: 1  MGAEEAVVEREKLSSHDPSANPITEAQFLSWKRHKDAEASAKRDETARKRAEDIASGAVQ 60
          MGAEE   ++ K +++ PS N ITE QFLSWKR KDA+ASA++ E ARKRAEDIA+G VQ
Sbjct: 1  MGAEEE--QQGKHNNNQPSPNSITEDQFLSWKRRKDADASARKAEVARKRAEDIAAGTVQ 60

Query: 61 MNGRELFLHQPWV 74
          MNGRELFLH+PWV
Sbjct: 61 MNGRELFLHEPWV 71

[Close]

BLAST of CmoCh04G024200 vs. TrEMBL
Match: A0A061FNI6_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_047076 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.0e-17
Identity = 49/73 (67.12%), Postives = 56/73 (76.71%), Query Frame = 1


Query: 1  MGAEEAVVEREKLSSHDPSANPITEAQFLSWKRHKDAEASAKRDETARKRAEDIASGAVQ 60
          MGAEE     +K     P  NPITE+QFL+WK  KDA+ASAK+ E ARKRAEDIA+G VQ
Sbjct: 1  MGAEE----EQKQEKEQPRTNPITESQFLAWKGQKDADASAKKAEAARKRAEDIAAGTVQ 60

Query: 61 MNGRELFLHQPWV 74
          MNGRELFLH+PWV
Sbjct: 61 MNGRELFLHEPWV 69

[Close]

BLAST of CmoCh04G024200 vs. TAIR10
Match: AT1G22140.1 (AT1G22140.1 unknown protein)

HSP 1 Score: 77.4 bits (189), Expect = 4.1e-15
Identity = 38/56 (67.86%), Postives = 44/56 (78.57%), Query Frame = 1


Query: 18 PSANPITEAQFLSWKRHKDAEASAKRDETARKRAEDIASGAVQMNGRELFLHQPWV 74
          P+   I++ QFL+WKR KDAE  AK+ E ARKR EDIASG V MNGRELFLH+PWV
Sbjct: 11 PTQISISKDQFLAWKRQKDAELLAKQAEAARKRQEDIASGRVPMNGRELFLHEPWV 66

[Close]

BLAST of CmoCh04G024200 vs. NCBI nr
Match: gi|449445110|ref|XP_004140316.1| (PREDICTED: zinc finger CCCH domain-containing protein 15 homolog [Cucumis sativus])

HSP 1 Score: 121.3 bits (303), Expect = 7.1e-25
Identity = 63/74 (85.14%), Postives = 67/74 (90.54%), Query Frame = 1


Query: 1  MGAEEAVVEREK-LSSHDPSANPITEAQFLSWKRHKDAEASAKRDETARKRAEDIASGAV 60
          MGAEEA +E+EK LSSH+P   PITEAQFLSWKR KDAEASAKR+ETARKRAEDIA GAV
Sbjct: 1  MGAEEAAMEQEKNLSSHNPRTVPITEAQFLSWKRRKDAEASAKREETARKRAEDIALGAV 60

Query: 61 QMNGRELFLHQPWV 74
          QMNGRELFLHQPWV
Sbjct: 61 QMNGRELFLHQPWV 74

[Close]

BLAST of CmoCh04G024200 vs. NCBI nr
Match: gi|659121074|ref|XP_008460489.1| (PREDICTED: uncharacterized protein LOC103499290 isoform X2 [Cucumis melo])

HSP 1 Score: 120.6 bits (301), Expect = 1.2e-24
Identity = 61/73 (83.56%), Postives = 65/73 (89.04%), Query Frame = 1


Query: 1  MGAEEAVVEREKLSSHDPSANPITEAQFLSWKRHKDAEASAKRDETARKRAEDIASGAVQ 60
          MG EEA +E+EKLS ++P   PITEAQFLSWKR KDAEASAKRDETARKRAEDIA GAVQ
Sbjct: 1  MGDEEAAMEQEKLSCNNPRTVPITEAQFLSWKRQKDAEASAKRDETARKRAEDIALGAVQ 60

Query: 61 MNGRELFLHQPWV 74
          MNGRELFLHQPWV
Sbjct: 61 MNGRELFLHQPWV 73

[Close]

BLAST of CmoCh04G024200 vs. NCBI nr
Match: gi|302141917|emb|CBI19120.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 101.3 bits (251), Expect = 7.6e-19
Identity = 50/73 (68.49%), Postives = 60/73 (82.19%), Query Frame = 1


Query: 1  MGAEEAVVEREKLSSHDPSANPITEAQFLSWKRHKDAEASAKRDETARKRAEDIASGAVQ 60
          MGAEE  V+  + S   P+ NP+++AQFLSWKR KDA+ SA+RDE ARKR EDIA+GAVQ
Sbjct: 1  MGAEEEKVQENEKSR--PTQNPMSQAQFLSWKRQKDADVSARRDEAARKRVEDIAAGAVQ 60

Query: 61 MNGRELFLHQPWV 74
          MNGRELFLH+PWV
Sbjct: 61 MNGRELFLHEPWV 71

[Close]

BLAST of CmoCh04G024200 vs. NCBI nr
Match: gi|731428313|ref|XP_010664299.1| (PREDICTED: uncharacterized protein LOC100247155 [Vitis vinifera])

HSP 1 Score: 101.3 bits (251), Expect = 7.6e-19
Identity = 50/73 (68.49%), Postives = 60/73 (82.19%), Query Frame = 1


Query: 1   MGAEEAVVEREKLSSHDPSANPITEAQFLSWKRHKDAEASAKRDETARKRAEDIASGAVQ 60
           MGAEE  V+  + S   P+ NP+++AQFLSWKR KDA+ SA+RDE ARKR EDIA+GAVQ
Sbjct: 78  MGAEEEKVQENEKSR--PTQNPMSQAQFLSWKRQKDADVSARRDEAARKRVEDIAAGAVQ 137

Query: 61  MNGRELFLHQPWV 74
           MNGRELFLH+PWV
Sbjct: 138 MNGRELFLHEPWV 148

[Close]

BLAST of CmoCh04G024200 vs. NCBI nr
Match: gi|823238864|ref|XP_012452086.1| (PREDICTED: zinc finger CCCH domain-containing protein 15 homolog [Gossypium raimondii])

HSP 1 Score: 99.4 bits (246), Expect = 2.9e-18
Identity = 49/73 (67.12%), Postives = 59/73 (80.82%), Query Frame = 1


Query: 1  MGAEEAVVEREKLSSHDPSANPITEAQFLSWKRHKDAEASAKRDETARKRAEDIASGAVQ 60
          MGAEE   ++ K  +  P+ NPITE+QFL+WKR KDA+ SAK+ E ARKRAEDIA+G VQ
Sbjct: 1  MGAEE---DQRKQENEQPTNNPITESQFLAWKRQKDADTSAKKAEAARKRAEDIAAGTVQ 60

Query: 61 MNGRELFLHQPWV 74
          MNGRELFLH+PWV
Sbjct: 61 MNGRELFLHEPWV 70

The following BLAST results are available for this feature:

BLAST of CmoCh04G024200 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh04G024200 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KN87_CUCSA	4.9e-25	85.14	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G407070 PE=4 SV=1	[more]
F6H0V1_VITVI	5.3e-19	68.49	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g04880 PE=4 SV=...	[more]
A0A0D2SMJ9_GOSRA	2.0e-18	67.12	Uncharacterized protein OS=Gossypium raimondii GN=B456_010G044500 PE=4 SV=1	[more]
B9RJF6_RICCO	5.9e-18	68.49	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1033830 PE=4 SV=1	[more]
A0A061FNI6_THECC	1.0e-17	67.12	Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_047076 PE=4 SV=1	[more]

BLAST of CmoCh04G024200 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G22140.1	4.1e-15	67.86	unknown protein	[more]

BLAST of CmoCh04G024200 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449445110\|ref\|XP_004140316.1\|	7.1e-25	85.14	PREDICTED: zinc finger CCCH domain-containing protein 15 homolog [Cucumis sativu...	[more]
gi\|659121074\|ref\|XP_008460489.1\|	1.2e-24	83.56	PREDICTED: uncharacterized protein LOC103499290 isoform X2 [Cucumis melo]	[more]
gi\|302141917\|emb\|CBI19120.3\|	7.6e-19	68.49	unnamed protein product [Vitis vinifera]	[more]
gi\|731428313\|ref\|XP_010664299.1\|	7.6e-19	68.49	PREDICTED: uncharacterized protein LOC100247155 [Vitis vinifera]	[more]
gi\|823238864\|ref\|XP_012452086.1\|	2.9e-18	67.12	PREDICTED: zinc finger CCCH domain-containing protein 15 homolog [Gossypium raim...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G024200.1	CmoCh04G024200.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR12681	ZINC FINGER-CONTAINING PROTEIN P48ZNF	coord: 1..73 score: 2.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G024200	Cucsa.034550	Cucumber (Gy14) v1	cgycmoB0019
CmoCh04G024200	CmaCh15G007260	Cucurbita maxima (Rimu)	cmacmoB309
CmoCh04G024200	CmaCh04G023140	Cucurbita maxima (Rimu)	cmacmoB729
CmoCh04G024200	Cla002152	Watermelon (97103) v1	cmowmB670
CmoCh04G024200	Csa5G407070	Cucumber (Chinese Long) v2	cmocuB740
CmoCh04G024200	MELO3C022803	Melon (DHL92) v3.5.1	cmomeB626
CmoCh04G024200	ClCG03G008950	Watermelon (Charleston Gray)	cmowcgB647
CmoCh04G024200	CSPI05G14620	Wild cucumber (PI 183967)	cmocpiB749
CmoCh04G024200	Lsi09G009570	Bottle gourd (USVL1VR-Ls)	cmolsiB610
CmoCh04G024200	Cp4.1LG13g04980	Cucurbita pepo (Zucchini)	cmocpeB657
CmoCh04G024200	Cp4.1LG01g20130	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G024200	MELO3C022803.2	Melon (DHL92) v3.6.1	cmomedB715
CmoCh04G024200	CsaV3_5G023730	Cucumber (Chinese Long) v3	cmocucB0876
CmoCh04G024200	Cla97C03G060140	Watermelon (97103) v2	cmowmbB719
CmoCh04G024200	Bhi12G001100	Wax gourd	cmowgoB0822
CmoCh04G024200	CsGy5G014550	Cucumber (Gy14) v2	cgybcmoB654
CmoCh04G024200	Carg01482	Silver-seed gourd	carcmoB1121
CmoCh04G024200	Carg18249	Silver-seed gourd	carcmoB0716

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh04G024200	CmoCh15G007490	Cucurbita moschata (Rifu)	cmocmoB262

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G024200	Watermelon (97103) v1	cmowmB667