ClCG03G008950 (gene) Watermelon (Charleston Gray)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATTAATTCTCTGGAATCCCCCTTGGAATAGAACAGAGGTTGCAGCAGTTCGTAGAGGTTGTCTATCAAATCCAAGAATTTGATATACAGTCAACAAAATGGGGGCTGAAGAAGGAGCTATGGAACAAGAGAAGCTCGCATCTCATAATCCAAGGACGGTTCCCATCACCGAGGCTCAGTTCCTATCCTGGAAGCGCCAGAAGGTACTTTCCCTTCTTCTTCTTCTTCATCAATCTCTCTCAGGCTTCGCTTAGGGTTTCTTTTGATTTCTCCTCTTTGATGTGCCATTACTCTCCGTGAGTTCTTTAAGTCCCAATTACTTGTATTTCCCTGCCAAAGCCCGTAAAATTACAGAATTTAGGGTTGCATGGAACAACTGTTGGGAATTTGAAAACCGTTGGGATTCCTTCTATTTAGAGAAGTACTTCGGAATAGTTTTCTCTGTTGTTCGAAGAAGGGATCTAAATTTTGCTCACACCCAATTCGGCTTAAGTTTTGGAAAGGATTTTTTTTTTAAAAAAAAAAAAATAAATAAATAAATAAATAAATAAATAAATAAAAAATCAACAACCAAACTAGCAACAGTCCCGAACATACTACGAGATTACATTGCTAGACACCAACATGGTGAACCACTCAGGATAAGGAGTTTAAAGAGTGGAAGACTCAAGCTTTGTGCCAAAATTTTATGGCACTAGCATTTTGGTCGTGGTGAACATGGAAGGAGAAAATTCTCATTTCACTACCTGAGCCTTTGCTTTCACAATAAAGAAAGAGACATCAGAAATATTGACCGCGTCATTATTCAGTAGCTTAACAACATCCAAACAATCAGATTCAGTAAGTTATTCGATAGATTAAGTGAGGAAAAGGAATTGGGTAATGAGAAAGAAGGTGTGCAGGTATGGTATGAACTGAGATAGTCCTAGCCGTCTGGGAGTAACTAGGATTATTTTGTTTTGTTTTCTTAATAAGAGACCAGCTTGAGGGTCTAAGGTACTCCTATAAAAAGGAGCAAATCAGAAAAGAAGAAAGAAAATTATAATAATAATAGAACAAGATTACTAGAGATTGGTCCAACCATTAAGAATAAAAAAAGGGATAGTTACAGAGTACCATTGAAATTTATTGCATTCTAAATCTCTTCCCAAGGTTCTTTTTGAACGCTGAAAGGTTCTCTTCTTTCTCTCAAACCATAAATTTCACAATGTAATGAAGAATTTTGCCTGCCGGTGCCAAATAATATATCCTTTTTACTAAAGGAGGAATTTACCAATACCTCCTCCGTGCCCTTACAACCTCCGGGAGGCACATTGACTCCAATCGTATTCAAGAATTTTCTCCATAGTGTCAATGCAAAGTGGCAACTTCTAATCACATGAACAAGATCCTCTGTAGATCTCTTGGCACACATCACATTCCACACACCACTGTCATTGGGACATACAACCATGGATGAAGATCTTTGAATGAAATCAGTGTTTAACCTTCCCAAAGAAACCAACCAAGCAAAGAACCTAATCTTCTTTGGATTTTTCCAGATCATGGAGAAGAAAGAGGAGATGGGAGGATTGGATTCAGAAACTAAACGGGCAAGAAGAGACTTCCTAGAGAACACTCCTGAAGGTTCAAGAGTCCATTTGAAGTTTGGGATAGGCAAACCCCTTGTAAAAACAAAAAGGAGATTAGCCAAATCTTGAGATTCATGATCATTAATGGATCTTCTAAAATGAAAAATCATAATCTTCATGGAGGGTAGGAGTAGAACGTAGAAGAACTATAATTGAGAGGATTAAAACAGAATTGACAAGCACCTCATTTCCAAGGGAAAATAAAGAGGTGGGGAAGAACAATTTGGGAAGAATTATTACCAATCCTGAAGTCCTCCGACAAACAAATACAAGTCCCATTTTCATGGAAATTTGATGAAATTGTTAAAGAAGGAGATTAGTGAAATTCTGCTAGAAAATACCTGCAATACGTAATTGTCTATCTTTAAATTTGGTGGCTATTAATGTTCTAAATCACATGTTTCAACAATTGATTGACAGTGGCACAAACTGCATGTTTATTTTTGTTCGAGTTAACCGACCACTGGAAGGAACCCAAACCATTCCACCAGTCTTTTATGAGGCGATTTGTGTGTCAGTGAAGTTTATGAAATGTTGATGTTTGACATCCTATCGCCAACCATCTCCTCTTATTTGCAGGATGCTGAGGCATCTGCTAAAAGAGATGAAACAGCAAGGAAACGTGCGGAAGATATAGCCTCAGGAGCAGTGCAAATGAACGGGCGAGAGCTTTTCTTGCACCAACCATGGGTGTTTGATAATAATCAATATTGAGGTTGGTGGTTTAAGATGGAAATATGGTAATGCTACTTTTTGTGGTCTCTTGAGAAATTGGCTTTGTACTTTAAAATGCCACCTTGTACTGTATGTCGTTGTATCCGACATTCATCATTCAAATGTCATTCATACGAATTTGCAGTTCTTCCGCCAAAAAGTCCTCTCTTTGGCTATGGTAGTTATATATGGATCTGTTTAGGTTTCATTGCTGGTAAAAGCTGTACAAAAATTTTGAATTGGACCAATTGGTTCTACGAAATGATGATCCATTAGGCGCTGATTTGTCCTATGCTGTTTGCC ATTAATTCTCTGGAATCCCCCTTGGAATAGAACAGAGGTTGCAGCAGTTCGTAGAGGTTGTCTATCAAATCCAAGAATTTGATATACAGTCAACAAAATGGGGGCTGAAGAAGGAGCTATGGAACAAGAGAAGCTCGCATCTCATAATCCAAGGACGGTTCCCATCACCGAGGCTCAGTTCCTATCCTGGAAGCGCCAGAAGATCATGGAGAAGAAAGAGGAGATGGGAGGATTGGATTCAGAAACTAAACGGGCAAGAAGAGACTTCCTAGAGAACACTCCTGAAGGTTCAAGAGTCCATTTGAAGTTTGGGATAGGCAAACCCCTTGATGCTGAGGCATCTGCTAAAAGAGATGAAACAGCAAGGAAACGTGCGGAAGATATAGCCTCAGGAGCAGTGCAAATGAACGGGCGAGAGCTTTTCTTGCACCAACCATGGGTGTTTGATAATAATCAATATTGAGGTTGGTGGTTTAAGATGGAAATATGGTAATGCTACTTTTTGTGGTCTCTTGAGAAATTGGCTTTGTACTTTAAAATGCCACCTTGTACTGTATGTCGTTGTATCCGACATTCATCATTCAAATGTCATTCATACGAATTTGCAGTTCTTCCGCCAAAAAGTCCTCTCTTTGGCTATGGTAGTTATATATGGATCTGTTTAGGTTTCATTGCTGGTAAAAGCTGTACAAAAATTTTGAATTGGACCAATTGGTTCTACGAAATGATGATCCATTAGGCGCTGATTTGTCCTATGCTGTTTGCC ATGGGGGCTGAAGAAGGAGCTATGGAACAAGAGAAGCTCGCATCTCATAATCCAAGGACGGTTCCCATCACCGAGGCTCAGTTCCTATCCTGGAAGCGCCAGAAGATCATGGAGAAGAAAGAGGAGATGGGAGGATTGGATTCAGAAACTAAACGGGCAAGAAGAGACTTCCTAGAGAACACTCCTGAAGGTTCAAGAGTCCATTTGAAGTTTGGGATAGGCAAACCCCTTGATGCTGAGGCATCTGCTAAAAGAGATGAAACAGCAAGGAAACGTGCGGAAGATATAGCCTCAGGAGCAGTGCAAATGAACGGGCGAGAGCTTTTCTTGCACCAACCATGGGTGTTTGATAATAATCAATATTGA MGAEEGAMEQEKLASHNPRTVPITEAQFLSWKRQKIMEKKEEMGGLDSETKRARRDFLENTPEGSRVHLKFGIGKPLDAEASAKRDETARKRAEDIASGAVQMNGRELFLHQPWVFDNNQY
BLAST of ClCG03G008950 vs. TrEMBL
Match: A0A0A0KN87_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G407070 PE=4 SV=1) HSP 1 Score: 87.4 bits (215), Expect = 1.3e-14 Identity = 41/44 (93.18%), Postives = 43/44 (97.73%), Query Frame = 1
BLAST of ClCG03G008950 vs. TrEMBL
Match: A0A0A0KN87_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G407070 PE=4 SV=1) HSP 1 Score: 66.6 bits (161), Expect = 2.3e-08 Identity = 36/46 (78.26%), Postives = 39/46 (84.78%), Query Frame = 1
HSP 2 Score: 81.6 bits (200), Expect = 7.0e-13 Identity = 42/90 (46.67%), Postives = 55/90 (61.11%), Query Frame = 1
BLAST of ClCG03G008950 vs. TrEMBL
Match: F6H0V1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g04880 PE=4 SV=1) HSP 1 Score: 35.8 bits (81), Expect = 4.4e+01 Identity = 17/35 (48.57%), Postives = 25/35 (71.43%), Query Frame = 1
HSP 2 Score: 80.1 bits (196), Expect = 2.0e-12 Identity = 36/44 (81.82%), Postives = 41/44 (93.18%), Query Frame = 1
BLAST of ClCG03G008950 vs. TrEMBL
Match: A0A061FNI6_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_047076 PE=4 SV=1) HSP 1 Score: 41.2 bits (95), Expect = 1.0e+00 Identity = 18/30 (60.00%), Postives = 22/30 (73.33%), Query Frame = 1
HSP 2 Score: 79.7 bits (195), Expect = 2.7e-12 Identity = 36/44 (81.82%), Postives = 40/44 (90.91%), Query Frame = 1
BLAST of ClCG03G008950 vs. TrEMBL
Match: A0A0B0NU02_GOSAR (Zinc finger CCCH domain-containing 15 OS=Gossypium arboreum GN=F383_21880 PE=4 SV=1) HSP 1 Score: 36.2 bits (82), Expect = 3.4e+01 Identity = 20/38 (52.63%), Postives = 23/38 (60.53%), Query Frame = 1
HSP 2 Score: 79.7 bits (195), Expect = 2.7e-12 Identity = 35/44 (79.55%), Postives = 40/44 (90.91%), Query Frame = 1
BLAST of ClCG03G008950 vs. TAIR10
Match: AT1G22140.1 (AT1G22140.1 unknown protein) HSP 1 Score: 67.0 bits (162), Expect = 9.0e-12 Identity = 31/44 (70.45%), Postives = 33/44 (75.00%), Query Frame = 1
BLAST of ClCG03G008950 vs. NCBI nr
Match: gi|659121072|ref|XP_008460488.1| (PREDICTED: uncharacterized protein LOC103499290 isoform X1 [Cucumis melo]) HSP 1 Score: 89.0 bits (219), Expect = 6.3e-15 Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = 1
BLAST of ClCG03G008950 vs. NCBI nr
Match: gi|659121074|ref|XP_008460489.1| (PREDICTED: uncharacterized protein LOC103499290 isoform X2 [Cucumis melo]) HSP 1 Score: 89.0 bits (219), Expect = 6.3e-15 Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = 1
BLAST of ClCG03G008950 vs. NCBI nr
Match: gi|659121074|ref|XP_008460489.1| (PREDICTED: uncharacterized protein LOC103499290 isoform X2 [Cucumis melo]) HSP 1 Score: 65.5 bits (158), Expect = 7.5e-08 Identity = 35/56 (62.50%), Postives = 39/56 (69.64%), Query Frame = 1
HSP 2 Score: 87.4 bits (215), Expect = 1.8e-14 Identity = 41/44 (93.18%), Postives = 43/44 (97.73%), Query Frame = 1
BLAST of ClCG03G008950 vs. NCBI nr
Match: gi|449445110|ref|XP_004140316.1| (PREDICTED: zinc finger CCCH domain-containing protein 15 homolog [Cucumis sativus]) HSP 1 Score: 66.6 bits (161), Expect = 3.3e-08 Identity = 36/46 (78.26%), Postives = 39/46 (84.78%), Query Frame = 1
HSP 2 Score: 81.6 bits (200), Expect = 1.0e-12 Identity = 42/90 (46.67%), Postives = 55/90 (61.11%), Query Frame = 1
BLAST of ClCG03G008950 vs. NCBI nr
Match: gi|731428313|ref|XP_010664299.1| (PREDICTED: uncharacterized protein LOC100247155 [Vitis vinifera]) HSP 1 Score: 35.8 bits (81), Expect = 6.3e+01 Identity = 17/35 (48.57%), Postives = 25/35 (71.43%), Query Frame = 1
HSP 2 Score: 80.1 bits (196), Expect = 2.9e-12 Identity = 36/44 (81.82%), Postives = 41/44 (93.18%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: None |