ClCG03G008950 (gene) Watermelon (Charleston Gray)

NameClCG03G008950
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionAt1g22140/F2E2_13
LocationCG_Chr03 : 11303725 .. 11306371 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTAATTCTCTGGAATCCCCCTTGGAATAGAACAGAGGTTGCAGCAGTTCGTAGAGGTTGTCTATCAAATCCAAGAATTTGATATACAGTCAACAAAATGGGGGCTGAAGAAGGAGCTATGGAACAAGAGAAGCTCGCATCTCATAATCCAAGGACGGTTCCCATCACCGAGGCTCAGTTCCTATCCTGGAAGCGCCAGAAGGTACTTTCCCTTCTTCTTCTTCTTCATCAATCTCTCTCAGGCTTCGCTTAGGGTTTCTTTTGATTTCTCCTCTTTGATGTGCCATTACTCTCCGTGAGTTCTTTAAGTCCCAATTACTTGTATTTCCCTGCCAAAGCCCGTAAAATTACAGAATTTAGGGTTGCATGGAACAACTGTTGGGAATTTGAAAACCGTTGGGATTCCTTCTATTTAGAGAAGTACTTCGGAATAGTTTTCTCTGTTGTTCGAAGAAGGGATCTAAATTTTGCTCACACCCAATTCGGCTTAAGTTTTGGAAAGGATTTTTTTTTTAAAAAAAAAAAAATAAATAAATAAATAAATAAATAAATAAATAAAAAATCAACAACCAAACTAGCAACAGTCCCGAACATACTACGAGATTACATTGCTAGACACCAACATGGTGAACCACTCAGGATAAGGAGTTTAAAGAGTGGAAGACTCAAGCTTTGTGCCAAAATTTTATGGCACTAGCATTTTGGTCGTGGTGAACATGGAAGGAGAAAATTCTCATTTCACTACCTGAGCCTTTGCTTTCACAATAAAGAAAGAGACATCAGAAATATTGACCGCGTCATTATTCAGTAGCTTAACAACATCCAAACAATCAGATTCAGTAAGTTATTCGATAGATTAAGTGAGGAAAAGGAATTGGGTAATGAGAAAGAAGGTGTGCAGGTATGGTATGAACTGAGATAGTCCTAGCCGTCTGGGAGTAACTAGGATTATTTTGTTTTGTTTTCTTAATAAGAGACCAGCTTGAGGGTCTAAGGTACTCCTATAAAAAGGAGCAAATCAGAAAAGAAGAAAGAAAATTATAATAATAATAGAACAAGATTACTAGAGATTGGTCCAACCATTAAGAATAAAAAAAGGGATAGTTACAGAGTACCATTGAAATTTATTGCATTCTAAATCTCTTCCCAAGGTTCTTTTTGAACGCTGAAAGGTTCTCTTCTTTCTCTCAAACCATAAATTTCACAATGTAATGAAGAATTTTGCCTGCCGGTGCCAAATAATATATCCTTTTTACTAAAGGAGGAATTTACCAATACCTCCTCCGTGCCCTTACAACCTCCGGGAGGCACATTGACTCCAATCGTATTCAAGAATTTTCTCCATAGTGTCAATGCAAAGTGGCAACTTCTAATCACATGAACAAGATCCTCTGTAGATCTCTTGGCACACATCACATTCCACACACCACTGTCATTGGGACATACAACCATGGATGAAGATCTTTGAATGAAATCAGTGTTTAACCTTCCCAAAGAAACCAACCAAGCAAAGAACCTAATCTTCTTTGGATTTTTCCAGATCATGGAGAAGAAAGAGGAGATGGGAGGATTGGATTCAGAAACTAAACGGGCAAGAAGAGACTTCCTAGAGAACACTCCTGAAGGTTCAAGAGTCCATTTGAAGTTTGGGATAGGCAAACCCCTTGTAAAAACAAAAAGGAGATTAGCCAAATCTTGAGATTCATGATCATTAATGGATCTTCTAAAATGAAAAATCATAATCTTCATGGAGGGTAGGAGTAGAACGTAGAAGAACTATAATTGAGAGGATTAAAACAGAATTGACAAGCACCTCATTTCCAAGGGAAAATAAAGAGGTGGGGAAGAACAATTTGGGAAGAATTATTACCAATCCTGAAGTCCTCCGACAAACAAATACAAGTCCCATTTTCATGGAAATTTGATGAAATTGTTAAAGAAGGAGATTAGTGAAATTCTGCTAGAAAATACCTGCAATACGTAATTGTCTATCTTTAAATTTGGTGGCTATTAATGTTCTAAATCACATGTTTCAACAATTGATTGACAGTGGCACAAACTGCATGTTTATTTTTGTTCGAGTTAACCGACCACTGGAAGGAACCCAAACCATTCCACCAGTCTTTTATGAGGCGATTTGTGTGTCAGTGAAGTTTATGAAATGTTGATGTTTGACATCCTATCGCCAACCATCTCCTCTTATTTGCAGGATGCTGAGGCATCTGCTAAAAGAGATGAAACAGCAAGGAAACGTGCGGAAGATATAGCCTCAGGAGCAGTGCAAATGAACGGGCGAGAGCTTTTCTTGCACCAACCATGGGTGTTTGATAATAATCAATATTGAGGTTGGTGGTTTAAGATGGAAATATGGTAATGCTACTTTTTGTGGTCTCTTGAGAAATTGGCTTTGTACTTTAAAATGCCACCTTGTACTGTATGTCGTTGTATCCGACATTCATCATTCAAATGTCATTCATACGAATTTGCAGTTCTTCCGCCAAAAAGTCCTCTCTTTGGCTATGGTAGTTATATATGGATCTGTTTAGGTTTCATTGCTGGTAAAAGCTGTACAAAAATTTTGAATTGGACCAATTGGTTCTACGAAATGATGATCCATTAGGCGCTGATTTGTCCTATGCTGTTTGCC

mRNA sequence

ATTAATTCTCTGGAATCCCCCTTGGAATAGAACAGAGGTTGCAGCAGTTCGTAGAGGTTGTCTATCAAATCCAAGAATTTGATATACAGTCAACAAAATGGGGGCTGAAGAAGGAGCTATGGAACAAGAGAAGCTCGCATCTCATAATCCAAGGACGGTTCCCATCACCGAGGCTCAGTTCCTATCCTGGAAGCGCCAGAAGATCATGGAGAAGAAAGAGGAGATGGGAGGATTGGATTCAGAAACTAAACGGGCAAGAAGAGACTTCCTAGAGAACACTCCTGAAGGTTCAAGAGTCCATTTGAAGTTTGGGATAGGCAAACCCCTTGATGCTGAGGCATCTGCTAAAAGAGATGAAACAGCAAGGAAACGTGCGGAAGATATAGCCTCAGGAGCAGTGCAAATGAACGGGCGAGAGCTTTTCTTGCACCAACCATGGGTGTTTGATAATAATCAATATTGAGGTTGGTGGTTTAAGATGGAAATATGGTAATGCTACTTTTTGTGGTCTCTTGAGAAATTGGCTTTGTACTTTAAAATGCCACCTTGTACTGTATGTCGTTGTATCCGACATTCATCATTCAAATGTCATTCATACGAATTTGCAGTTCTTCCGCCAAAAAGTCCTCTCTTTGGCTATGGTAGTTATATATGGATCTGTTTAGGTTTCATTGCTGGTAAAAGCTGTACAAAAATTTTGAATTGGACCAATTGGTTCTACGAAATGATGATCCATTAGGCGCTGATTTGTCCTATGCTGTTTGCC

Coding sequence (CDS)

ATGGGGGCTGAAGAAGGAGCTATGGAACAAGAGAAGCTCGCATCTCATAATCCAAGGACGGTTCCCATCACCGAGGCTCAGTTCCTATCCTGGAAGCGCCAGAAGATCATGGAGAAGAAAGAGGAGATGGGAGGATTGGATTCAGAAACTAAACGGGCAAGAAGAGACTTCCTAGAGAACACTCCTGAAGGTTCAAGAGTCCATTTGAAGTTTGGGATAGGCAAACCCCTTGATGCTGAGGCATCTGCTAAAAGAGATGAAACAGCAAGGAAACGTGCGGAAGATATAGCCTCAGGAGCAGTGCAAATGAACGGGCGAGAGCTTTTCTTGCACCAACCATGGGTGTTTGATAATAATCAATATTGA

Protein sequence

MGAEEGAMEQEKLASHNPRTVPITEAQFLSWKRQKIMEKKEEMGGLDSETKRARRDFLENTPEGSRVHLKFGIGKPLDAEASAKRDETARKRAEDIASGAVQMNGRELFLHQPWVFDNNQY
BLAST of ClCG03G008950 vs. TrEMBL
Match: A0A0A0KN87_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G407070 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.3e-14
Identity = 41/44 (93.18%), Postives = 43/44 (97.73%), Query Frame = 1

Query: 78  DAEASAKRDETARKRAEDIASGAVQMNGRELFLHQPWVFDNNQY 122
           DAEASAKR+ETARKRAEDIA GAVQMNGRELFLHQPWVFDN+QY
Sbjct: 37  DAEASAKREETARKRAEDIALGAVQMNGRELFLHQPWVFDNSQY 80

BLAST of ClCG03G008950 vs. TrEMBL
Match: A0A0A0KN87_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G407070 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.3e-08
Identity = 36/46 (78.26%), Postives = 39/46 (84.78%), Query Frame = 1

Query: 1  MGAEEGAMEQEK-LASHNPRTVPITEAQFLSWKRQKIME---KKEE 43
          MGAEE AMEQEK L+SHNPRTVPITEAQFLSWKR+K  E   K+EE
Sbjct: 1  MGAEEAAMEQEKNLSSHNPRTVPITEAQFLSWKRRKDAEASAKREE 46


HSP 2 Score: 81.6 bits (200), Expect = 7.0e-13
Identity = 42/90 (46.67%), Postives = 55/90 (61.11%), Query Frame = 1

Query: 32  KRQKIMEKKEEMGGLDSETKRARRDFLENTPEGSRVHLKFGIGKPLDAEASAKRDETARK 91
           K + +  + E MG  + + +   +      P      L +   K  DA+ SA+RDE ARK
Sbjct: 65  KAKIVFGRTENMGAEEEKVQENEKSRPTQNPMSQAQFLSWKRQK--DADVSARRDEAARK 124

Query: 92  RAEDIASGAVQMNGRELFLHQPWVFDNNQY 122
           R EDIA+GAVQMNGRELFLH+PWVFDN +Y
Sbjct: 125 RVEDIAAGAVQMNGRELFLHEPWVFDNTRY 152

BLAST of ClCG03G008950 vs. TrEMBL
Match: F6H0V1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g04880 PE=4 SV=1)

HSP 1 Score: 35.8 bits (81), Expect = 4.4e+01
Identity = 17/35 (48.57%), Postives = 25/35 (71.43%), Query Frame = 1

Query: 1   MGAEEGAMEQEKLASHNPRTVPITEAQFLSWKRQK 36
           MGAEE  +++ + +   P   P+++AQFLSWKRQK
Sbjct: 76  MGAEEEKVQENEKS--RPTQNPMSQAQFLSWKRQK 108


HSP 2 Score: 80.1 bits (196), Expect = 2.0e-12
Identity = 36/44 (81.82%), Postives = 41/44 (93.18%), Query Frame = 1

Query: 78  DAEASAKRDETARKRAEDIASGAVQMNGRELFLHQPWVFDNNQY 122
           DA+ASAK+ E ARKRAEDIA+G VQMNGRELFLH+PWVFDN+QY
Sbjct: 32  DADASAKKAEAARKRAEDIAAGTVQMNGRELFLHEPWVFDNSQY 75

BLAST of ClCG03G008950 vs. TrEMBL
Match: A0A061FNI6_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_047076 PE=4 SV=1)

HSP 1 Score: 41.2 bits (95), Expect = 1.0e+00
Identity = 18/30 (60.00%), Postives = 22/30 (73.33%), Query Frame = 1

Query: 6  GAMEQEKLASHNPRTVPITEAQFLSWKRQK 36
          GA E++K     PRT PITE+QFL+WK QK
Sbjct: 2  GAEEEQKQEKEQPRTNPITESQFLAWKGQK 31


HSP 2 Score: 79.7 bits (195), Expect = 2.7e-12
Identity = 36/44 (81.82%), Postives = 40/44 (90.91%), Query Frame = 1

Query: 78  DAEASAKRDETARKRAEDIASGAVQMNGRELFLHQPWVFDNNQY 122
           DAE SAK+ E ARKRAEDIA+G VQMNGRELFLH+PWVFDN+QY
Sbjct: 33  DAETSAKKAEAARKRAEDIAAGTVQMNGRELFLHEPWVFDNSQY 76

BLAST of ClCG03G008950 vs. TrEMBL
Match: A0A0B0NU02_GOSAR (Zinc finger CCCH domain-containing 15 OS=Gossypium arboreum GN=F383_21880 PE=4 SV=1)

HSP 1 Score: 36.2 bits (82), Expect = 3.4e+01
Identity = 20/38 (52.63%), Postives = 23/38 (60.53%), Query Frame = 1

Query: 1  MGAEEGAMEQEKLASHNPRTVPITEAQFLSWKRQKIME 39
          M AEE   EQ K  +  P   PIT +QFL+WKRQK  E
Sbjct: 1  MRAEE---EQRKQENEQPTNNPITVSQFLAWKRQKDAE 35


HSP 2 Score: 79.7 bits (195), Expect = 2.7e-12
Identity = 35/44 (79.55%), Postives = 40/44 (90.91%), Query Frame = 1

Query: 78  DAEASAKRDETARKRAEDIASGAVQMNGRELFLHQPWVFDNNQY 122
           DA+ SA+RDE ARKR EDIA+GAVQMNGRELFLH+PWVFDN +Y
Sbjct: 844 DADVSARRDEAARKRVEDIAAGAVQMNGRELFLHEPWVFDNTRY 887

BLAST of ClCG03G008950 vs. TAIR10
Match: AT1G22140.1 (AT1G22140.1 unknown protein)

HSP 1 Score: 67.0 bits (162), Expect = 9.0e-12
Identity = 31/44 (70.45%), Postives = 33/44 (75.00%), Query Frame = 1

Query: 78  DAEASAKRDETARKRAEDIASGAVQMNGRELFLHQPWVFDNNQY 122
           DAE  AK+ E ARKR EDIASG V MNGRELFLH+PWVFD+  +
Sbjct: 29  DAELLAKQAEAARKRQEDIASGRVPMNGRELFLHEPWVFDDTHH 72

BLAST of ClCG03G008950 vs. NCBI nr
Match: gi|659121072|ref|XP_008460488.1| (PREDICTED: uncharacterized protein LOC103499290 isoform X1 [Cucumis melo])

HSP 1 Score: 89.0 bits (219), Expect = 6.3e-15
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = 1

Query: 78  DAEASAKRDETARKRAEDIASGAVQMNGRELFLHQPWVFDNNQY 122
           DAEASAKRDETARKRAEDIA GAVQMNGRELFLHQPWVFDN+QY
Sbjct: 76  DAEASAKRDETARKRAEDIALGAVQMNGRELFLHQPWVFDNSQY 119

BLAST of ClCG03G008950 vs. NCBI nr
Match: gi|659121074|ref|XP_008460489.1| (PREDICTED: uncharacterized protein LOC103499290 isoform X2 [Cucumis melo])

HSP 1 Score: 89.0 bits (219), Expect = 6.3e-15
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = 1

Query: 78  DAEASAKRDETARKRAEDIASGAVQMNGRELFLHQPWVFDNNQY 122
           DAEASAKRDETARKRAEDIA GAVQMNGRELFLHQPWVFDN+QY
Sbjct: 36  DAEASAKRDETARKRAEDIALGAVQMNGRELFLHQPWVFDNSQY 79

BLAST of ClCG03G008950 vs. NCBI nr
Match: gi|659121074|ref|XP_008460489.1| (PREDICTED: uncharacterized protein LOC103499290 isoform X2 [Cucumis melo])

HSP 1 Score: 65.5 bits (158), Expect = 7.5e-08
Identity = 35/56 (62.50%), Postives = 39/56 (69.64%), Query Frame = 1

Query: 1  MGAEEGAMEQEKLASHNPRTVPITEAQFLSWKRQKIMEKKEEMGGLDSETKRARRD 57
          MG EE AMEQEKL+ +NPRTVPITEAQFLSWKRQK  E   +      ET R R +
Sbjct: 1  MGDEEAAMEQEKLSCNNPRTVPITEAQFLSWKRQKDAEASAKR----DETARKRAE 52


HSP 2 Score: 87.4 bits (215), Expect = 1.8e-14
Identity = 41/44 (93.18%), Postives = 43/44 (97.73%), Query Frame = 1

Query: 78  DAEASAKRDETARKRAEDIASGAVQMNGRELFLHQPWVFDNNQY 122
           DAEASAKR+ETARKRAEDIA GAVQMNGRELFLHQPWVFDN+QY
Sbjct: 37  DAEASAKREETARKRAEDIALGAVQMNGRELFLHQPWVFDNSQY 80

BLAST of ClCG03G008950 vs. NCBI nr
Match: gi|449445110|ref|XP_004140316.1| (PREDICTED: zinc finger CCCH domain-containing protein 15 homolog [Cucumis sativus])

HSP 1 Score: 66.6 bits (161), Expect = 3.3e-08
Identity = 36/46 (78.26%), Postives = 39/46 (84.78%), Query Frame = 1

Query: 1  MGAEEGAMEQEK-LASHNPRTVPITEAQFLSWKRQKIME---KKEE 43
          MGAEE AMEQEK L+SHNPRTVPITEAQFLSWKR+K  E   K+EE
Sbjct: 1  MGAEEAAMEQEKNLSSHNPRTVPITEAQFLSWKRRKDAEASAKREE 46


HSP 2 Score: 81.6 bits (200), Expect = 1.0e-12
Identity = 42/90 (46.67%), Postives = 55/90 (61.11%), Query Frame = 1

Query: 32  KRQKIMEKKEEMGGLDSETKRARRDFLENTPEGSRVHLKFGIGKPLDAEASAKRDETARK 91
           K + +  + E MG  + + +   +      P      L +   K  DA+ SA+RDE ARK
Sbjct: 67  KAKIVFGRTENMGAEEEKVQENEKSRPTQNPMSQAQFLSWKRQK--DADVSARRDEAARK 126

Query: 92  RAEDIASGAVQMNGRELFLHQPWVFDNNQY 122
           R EDIA+GAVQMNGRELFLH+PWVFDN +Y
Sbjct: 127 RVEDIAAGAVQMNGRELFLHEPWVFDNTRY 154

BLAST of ClCG03G008950 vs. NCBI nr
Match: gi|731428313|ref|XP_010664299.1| (PREDICTED: uncharacterized protein LOC100247155 [Vitis vinifera])

HSP 1 Score: 35.8 bits (81), Expect = 6.3e+01
Identity = 17/35 (48.57%), Postives = 25/35 (71.43%), Query Frame = 1

Query: 1   MGAEEGAMEQEKLASHNPRTVPITEAQFLSWKRQK 36
           MGAEE  +++ + +   P   P+++AQFLSWKRQK
Sbjct: 78  MGAEEEKVQENEKS--RPTQNPMSQAQFLSWKRQK 110


HSP 2 Score: 80.1 bits (196), Expect = 2.9e-12
Identity = 36/44 (81.82%), Postives = 41/44 (93.18%), Query Frame = 1

Query: 78  DAEASAKRDETARKRAEDIASGAVQMNGRELFLHQPWVFDNNQY 122
           DA+ASAK+ E ARKRAEDIA+G VQMNGRELFLH+PWVFDN+QY
Sbjct: 32  DADASAKKAEAARKRAEDIAAGTVQMNGRELFLHEPWVFDNSQY 75

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KN87_CUCSA1.3e-1493.18Uncharacterized protein OS=Cucumis sativus GN=Csa_5G407070 PE=4 SV=1[more]
A0A0A0KN87_CUCSA2.3e-0878.26Uncharacterized protein OS=Cucumis sativus GN=Csa_5G407070 PE=4 SV=1[more]
F6H0V1_VITVI4.4e+0148.57Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g04880 PE=4 SV=... [more]
A0A061FNI6_THECC1.0e+0060.00Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_047076 PE=4 SV=1[more]
A0A0B0NU02_GOSAR3.4e+0152.63Zinc finger CCCH domain-containing 15 OS=Gossypium arboreum GN=F383_21880 PE=4 S... [more]
Match NameE-valueIdentityDescription
AT1G22140.19.0e-1270.45 unknown protein[more]
Match NameE-valueIdentityDescription
gi|659121072|ref|XP_008460488.1|6.3e-1595.45PREDICTED: uncharacterized protein LOC103499290 isoform X1 [Cucumis melo][more]
gi|659121074|ref|XP_008460489.1|6.3e-1595.45PREDICTED: uncharacterized protein LOC103499290 isoform X2 [Cucumis melo][more]
gi|659121074|ref|XP_008460489.1|7.5e-0862.50PREDICTED: uncharacterized protein LOC103499290 isoform X2 [Cucumis melo][more]
gi|449445110|ref|XP_004140316.1|3.3e-0878.26PREDICTED: zinc finger CCCH domain-containing protein 15 homolog [Cucumis sativu... [more]
gi|731428313|ref|XP_010664299.1|6.3e+0148.57PREDICTED: uncharacterized protein LOC100247155 [Vitis vinifera][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG03G008950.1ClCG03G008950.1mRNA


Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR12681ZINC FINGER-CONTAINING PROTEIN P48ZNFcoord: 1..35
score: 6.5E-26coord: 78..121
score: 6.5