CSPI05G14620 (gene) Wild cucumber (PI 183967)

NameCSPI05G14620
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionZinc finger CCCH domain-containing 15
LocationChr5 : 15127668 .. 15131145 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CATTTTCTAATTTTTTTTGAAATAAATAAACCTAAATTGCCTTTGGATTCTTTTTTCAACTTGTTTTCGCTATTTTTTATCTATACTCTCTCGAATTCCCATTCGAATAGAACAACGATTTGTATAGGTTTTCTCTCAAATTCAAGAATTTGATATACGGTCAACAAAATGGGGGCAGAAGAAGCAGCTATGGAACAAGAGAAGAATCTCTCATCTCATAATCCAAGGACGGTTCCCATCACAGAGGCTCAATTCCTATCCTGGAAGCGCCGGAAGGTATTTTCCCTTCTTCTTCTTGTTCTTCATCAATCTCTCTCAGGCTCTAAATTTATTGTTTCTTTTGATTGCTGCTCTTTAATGTGTCATTACTCCGCTTGAGTTCTTTAAGGTGCCGATCAATCGTATTTCCATGCCATAACCTGAAAAATTAGAGAATTTAGGGTTGCGTTGAATCACTTTTGGGAATTTGGAAACCTCTAGGATTCATTCAATTTTGAGAGGTAATTAGGAATAAATTCCTCTGTTCTTTGCAGAATAATGGGTCTAAATTTTGTCTAAACTCAATTCGGCTTAAGTTTTGGAAAGGAGAAAAACAAATTTAGAATAAACAACCAAACAGGCAACAAACTCGAAGAAACTACGATATCACATTACTAGACACAAACAAGGTACACCTCCAAACTTTATGCACTTAAAGGGTGCGCTAGTGTATTTTTGGTTGTGGCAAATATCTGATGAGAAAGAGATAATTCTCAATTCACCATCATTACAAGCTTATGCCTTATCAATAAAAAAGAGACTTCTGAAATGTCGACCACATCATCATTTTGGAGCTTAACAATCTCAAAACAGTGAGATTCAGCTAGGATATATTAGGTGAGGAAAAGGAATTAGGCGATGAGAAACTATCGTGTGGGTTGGTTTGACCTAGTGGTAAAAATGGAAATAGTCTCAATAACTCTCAATAACTAACTAAAAGGACATGAGTTCGATCCATGATAGTCACCTACTTAAATTAATTTCTTATGAATTTTGTTGACACCCAAATGTTGTAGGGTAAGGTGAATTGTCGGTGAGATTACTCGAACTGCATGTGAGCTGACTCAGACACTTACAAATATCAGAAAAAGAAAAGAAATGTTTTAATGTATAAAATTACAGAGATAATCCTAGCCTTCTGTCCTTCTGTGAGGGACTAGGATTATTTTGTTTTGTTTTCATTTATTTTTATTAAGAAACCAGCTTTAGGGCCCATAAAAAAAGATAACAACTATTAACGGAGCAAAGTAGAAGTGAAGAAAAAATTTATAATAGAACAAGATTACTAGAGATTGGGTCTACAGTCTCAACTATTAAGAATAAAAAAATGAGGATAGTTATATTGAAATTTGCTGCATTCTAAATCTCTTCCCAAGATTCTTTTTGACTGCTGAAAGGTTCTCTTGATTCTCTCAAGCCATAAATTTCACAATGTAATGAAGAATCTCGCATCCCACGGCCAGATAATAGATATTTTTCGTACTGAAAGGAGGAATTTACCAATACCCCTACAACATCTGGGAGGAACAGTGACTCCAAACTTATTCAAGAAATTTCTCCATAGTGTCAAATATCAATCAATGCAAAGCAGCAACTTCAAATCAGATGAATAATTTCCTCTGTAGATCTTTTTCACACATCATATCCCACACGCCACTCTCAGTGGGACATAAAACCATGGATGTAGATCTTTGAATGAAGTTACAATGTTTAACCTTCCCAAAGAAACCGATAAAGCAAAGAACCTAACCTTTGGATTTTTCCAAATTATGGTGAAGAAAGAGGAGACAAGGATTGGATTCAGACACCTAATGGGCAACAAGAGAATTCCTAGAGAACACTCTGTTAGATATCTGGATTTAGATAGGGCTAAGGGTAGTTAGTTATATAGGCAGTTAGATGGTTATAAATAGAAAGTTGGGGAGGGAAGAAAGGCACGAAGAATTTGGTGAAGATAATGGACTGCAACATTCCTTGAAAGGAAGGAAGGGTAGAGGGTTAGGGTTCTTTTACTTGTTTGTTCTTTTATATTGTAATTTATGTTTGAGATATCAATAAAATGGAAACACTATATCACCGTTTTATCACACTCCTGAAGGATCAAGAGTCCATTTGAAGTTTGACATAGGCACATCCCTTGTAGCAGAAAGGAGATTGGCCTAATATGAGATTCATGATCATTAGTAGTCTTCCAAAATGAAAAGTCATGATCTAGGATGGTCGATGTAGAAGAACTATAATTGAGAGGATTAAGACAGAACTGACAAGCACCTCATTTCCAAGTCAAAATAAAGAGTTAGTTAAGAATAACTTGGGAAGAACTATTAGCGTTCCTAAAGTCCACCGAGAATCAAACATGAGTTCCATTTTCCATGGAAATTTTAATGAAATTGTTAAAGAAGATCAGTGAAATTCTACTAGAAAATACATACTATATGTAAGTGGCTATCTTTGAATTTGGTGGCTATTAACGTTCTAAATCACATGTTTCAACAATTGATAGACCACATGAACTGCAGGTTCATTTTTGTTCGAGTTAACTAACCACTAAAACAAACCTAAGCCATTCCACCAGTCTTTTAAGAGTGATTTGTGTCAGTAGAGTTAATGAGTAGTTGATGTTTGACATCCTATTCCTAACCATTTTCTCTTATTTGCAGGATGCTGAGGCATCTGCTAAAAGAGAGGAAACAGCAAGGAAACGTGCGGAAGATATTGCCTTAGGAGCGGTGCAAATGAATGGGCGAGAGCTTTTCTTGCACCAACCATGGGTGTTTGATAATTCTCAATATTGAGGTTGGTGTGGTTTAAGATTGAAAAATTGTAGTGCTACTTTTTGTTCTCTAGAGAAATTGGCTTTGTACTTTAAAATGCTACCTTGCATTGTCATCGTTCATATAAATTAGTTCATCCGTTCAAAATCATCTTCTCATTGCTATGGTAATACACGAGTCTATTTAGGTTTCATGGCATGGTAAAAACTGTACAAAATGATGAATCCAATTTAAGTGCTGATTTGTTCTTTGCTGTTGACCTAAAATGTCTTACAGGATTCATTTGTGTTGTACCGTCTATAACCCTCATGTAAACAAAATGGTATGTTTTCTTTCTAAAGTAGGTCCTACAGGGCATCAAAATCAAGTTGTATCCATGGTTTTAGCAGCTACGATATTTATCGCCATGTAAATTCAGTCCCCAATCCCAAATTATCTTATGAAGTTATGATGCATGGTTAATGGAATCAAATATTAAGAGACCTCTGTGGATTGGTGCCACTGACTCTAAGGTCCTTGCAAAGAATAAAGGACTTGGAGGAAATTGACAAAAATTAAATTGTAGTGGCCATCAATCTATTGTTGGGATTGCGTTTGTAAATTGAAACAAACTATTCAATAATTTAGGTGTTATTTATTTTCTAATAAATAAAGTGTTATTATTT

mRNA sequence

ATGGGGGCAGAAGAAGCAGCTATGGAACAAGAGAAGAATCTCTCATCTCATAATCCAAGGACGGTTCCCATCACAGAGGCTCAATTCCTATCCTGGAAGCGCCGGAAGGATGCTGAGGCATCTGCTAAAAGAGAGGAAACAGCAAGGAAACGTGCGGAAGATATTGCCTTAGGAGCGGTGCAAATGAATGGGCGAGAGCTTTTCTTGCACCAACCATGGGTGTTTGATAATTCTCAATATTGA

Coding sequence (CDS)

ATGGGGGCAGAAGAAGCAGCTATGGAACAAGAGAAGAATCTCTCATCTCATAATCCAAGGACGGTTCCCATCACAGAGGCTCAATTCCTATCCTGGAAGCGCCGGAAGGATGCTGAGGCATCTGCTAAAAGAGAGGAAACAGCAAGGAAACGTGCGGAAGATATTGCCTTAGGAGCGGTGCAAATGAATGGGCGAGAGCTTTTCTTGCACCAACCATGGGTGTTTGATAATTCTCAATATTGA
BLAST of CSPI05G14620 vs. TrEMBL
Match: A0A0A0KN87_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G407070 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 6.1e-37
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 1

Query: 1  MGAEEAAMEQEKNLSSHNPRTVPITEAQFLSWKRRKDAEASAKREETARKRAEDIALGAV 60
          MGAEEAAMEQEKNLSSHNPRTVPITEAQFLSWKRRKDAEASAKREETARKRAEDIALGAV
Sbjct: 1  MGAEEAAMEQEKNLSSHNPRTVPITEAQFLSWKRRKDAEASAKREETARKRAEDIALGAV 60

Query: 61 QMNGRELFLHQPWVFDNSQY 81
          QMNGRELFLHQPWVFDNSQY
Sbjct: 61 QMNGRELFLHQPWVFDNSQY 80

BLAST of CSPI05G14620 vs. TrEMBL
Match: A0A061FNI6_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_047076 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 7.2e-22
Identity = 58/80 (72.50%), Postives = 65/80 (81.25%), Query Frame = 1

Query: 1  MGAEEAAMEQEKNLSSHNPRTVPITEAQFLSWKRRKDAEASAKREETARKRAEDIALGAV 60
          MGAEE   +QEK      PRT PITE+QFL+WK +KDA+ASAK+ E ARKRAEDIA G V
Sbjct: 1  MGAEEE-QKQEKE----QPRTNPITESQFLAWKGQKDADASAKKAEAARKRAEDIAAGTV 60

Query: 61 QMNGRELFLHQPWVFDNSQY 81
          QMNGRELFLH+PWVFDNSQY
Sbjct: 61 QMNGRELFLHEPWVFDNSQY 75

BLAST of CSPI05G14620 vs. TrEMBL
Match: A0A0D2SMJ9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G044500 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.2e-21
Identity = 55/80 (68.75%), Postives = 64/80 (80.00%), Query Frame = 1

Query: 1  MGAEEAAMEQEKNLSSHNPRTVPITEAQFLSWKRRKDAEASAKREETARKRAEDIALGAV 60
          MGAEE   +QE    ++NP    ITE+QFL+WKR+KDA+ SAK+ E ARKRAEDIA G V
Sbjct: 1  MGAEEDQRKQENEQPTNNP----ITESQFLAWKRQKDADTSAKKAEAARKRAEDIAAGTV 60

Query: 61 QMNGRELFLHQPWVFDNSQY 81
          QMNGRELFLH+PWVFDNSQY
Sbjct: 61 QMNGRELFLHEPWVFDNSQY 76

BLAST of CSPI05G14620 vs. TrEMBL
Match: A0A059BKG9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F00482 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 8.0e-21
Identity = 56/80 (70.00%), Postives = 65/80 (81.25%), Query Frame = 1

Query: 1  MGAEEAAMEQEKNLSSHNPRTVPITEAQFLSWKRRKDAEASAKREETARKRAEDIALGAV 60
          MGAEE   E+EK  +  NP    I+ AQFLSWKRRKDAEASA++ E+ARKR+EDIA G V
Sbjct: 1  MGAEEG--EEEKRETKPNP----ISAAQFLSWKRRKDAEASARKAESARKRSEDIATGTV 60

Query: 61 QMNGRELFLHQPWVFDNSQY 81
          QMNGRELFLH+PWVFDN+QY
Sbjct: 61 QMNGRELFLHEPWVFDNTQY 74

BLAST of CSPI05G14620 vs. TrEMBL
Match: A0A067K9E1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11994 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.0e-20
Identity = 53/80 (66.25%), Postives = 64/80 (80.00%), Query Frame = 1

Query: 1  MGAEEAAMEQEKNLSSHNPRTVPITEAQFLSWKRRKDAEASAKREETARKRAEDIALGAV 60
          MGAEE   EQ+   ++  PR   ITE+QFL+WKRRK+A+ SAK+ E ARKRAE+IA G V
Sbjct: 1  MGAEE---EQQGKQANEQPRANSITESQFLTWKRRKEADVSAKKAEAARKRAEEIAAGTV 60

Query: 61 QMNGRELFLHQPWVFDNSQY 81
          QMNGRELFLH+PWVFDNS+Y
Sbjct: 61 QMNGRELFLHEPWVFDNSRY 77

BLAST of CSPI05G14620 vs. TAIR10
Match: AT1G22140.1 (AT1G22140.1 unknown protein)

HSP 1 Score: 84.7 bits (208), Expect = 2.8e-17
Identity = 40/68 (58.82%), Postives = 51/68 (75.00%), Query Frame = 1

Query: 13 NLSSHNPRTVPITEAQFLSWKRRKDAEASAKREETARKRAEDIALGAVQMNGRELFLHQP 72
          N  +  P  + I++ QFL+WKR+KDAE  AK+ E ARKR EDIA G V MNGRELFLH+P
Sbjct: 5  NGETPKPTQISISKDQFLAWKRQKDAELLAKQAEAARKRQEDIASGRVPMNGRELFLHEP 64

Query: 73 WVFDNSQY 81
          WVFD++ +
Sbjct: 65 WVFDDTHH 72

BLAST of CSPI05G14620 vs. NCBI nr
Match: gi|449445110|ref|XP_004140316.1| (PREDICTED: zinc finger CCCH domain-containing protein 15 homolog [Cucumis sativus])

HSP 1 Score: 161.0 bits (406), Expect = 8.7e-37
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 1

Query: 1  MGAEEAAMEQEKNLSSHNPRTVPITEAQFLSWKRRKDAEASAKREETARKRAEDIALGAV 60
          MGAEEAAMEQEKNLSSHNPRTVPITEAQFLSWKRRKDAEASAKREETARKRAEDIALGAV
Sbjct: 1  MGAEEAAMEQEKNLSSHNPRTVPITEAQFLSWKRRKDAEASAKREETARKRAEDIALGAV 60

Query: 61 QMNGRELFLHQPWVFDNSQY 81
          QMNGRELFLHQPWVFDNSQY
Sbjct: 61 QMNGRELFLHQPWVFDNSQY 80

BLAST of CSPI05G14620 vs. NCBI nr
Match: gi|659121074|ref|XP_008460489.1| (PREDICTED: uncharacterized protein LOC103499290 isoform X2 [Cucumis melo])

HSP 1 Score: 144.4 bits (363), Expect = 8.5e-32
Identity = 74/80 (92.50%), Postives = 77/80 (96.25%), Query Frame = 1

Query: 1  MGAEEAAMEQEKNLSSHNPRTVPITEAQFLSWKRRKDAEASAKREETARKRAEDIALGAV 60
          MG EEAAMEQEK LS +NPRTVPITEAQFLSWKR+KDAEASAKR+ETARKRAEDIALGAV
Sbjct: 1  MGDEEAAMEQEK-LSCNNPRTVPITEAQFLSWKRQKDAEASAKRDETARKRAEDIALGAV 60

Query: 61 QMNGRELFLHQPWVFDNSQY 81
          QMNGRELFLHQPWVFDNSQY
Sbjct: 61 QMNGRELFLHQPWVFDNSQY 79

BLAST of CSPI05G14620 vs. NCBI nr
Match: gi|590598327|ref|XP_007018863.1| (Uncharacterized protein isoform 1 [Theobroma cacao])

HSP 1 Score: 110.9 bits (276), Expect = 1.0e-21
Identity = 58/80 (72.50%), Postives = 65/80 (81.25%), Query Frame = 1

Query: 1  MGAEEAAMEQEKNLSSHNPRTVPITEAQFLSWKRRKDAEASAKREETARKRAEDIALGAV 60
          MGAEE   +QEK      PRT PITE+QFL+WK +KDA+ASAK+ E ARKRAEDIA G V
Sbjct: 1  MGAEEE-QKQEKE----QPRTNPITESQFLAWKGQKDADASAKKAEAARKRAEDIAAGTV 60

Query: 61 QMNGRELFLHQPWVFDNSQY 81
          QMNGRELFLH+PWVFDNSQY
Sbjct: 61 QMNGRELFLHEPWVFDNSQY 75

BLAST of CSPI05G14620 vs. NCBI nr
Match: gi|823238864|ref|XP_012452086.1| (PREDICTED: zinc finger CCCH domain-containing protein 15 homolog [Gossypium raimondii])

HSP 1 Score: 110.2 bits (274), Expect = 1.8e-21
Identity = 55/80 (68.75%), Postives = 64/80 (80.00%), Query Frame = 1

Query: 1  MGAEEAAMEQEKNLSSHNPRTVPITEAQFLSWKRRKDAEASAKREETARKRAEDIALGAV 60
          MGAEE   +QE    ++NP    ITE+QFL+WKR+KDA+ SAK+ E ARKRAEDIA G V
Sbjct: 1  MGAEEDQRKQENEQPTNNP----ITESQFLAWKRQKDADTSAKKAEAARKRAEDIAAGTV 60

Query: 61 QMNGRELFLHQPWVFDNSQY 81
          QMNGRELFLH+PWVFDNSQY
Sbjct: 61 QMNGRELFLHEPWVFDNSQY 76

BLAST of CSPI05G14620 vs. NCBI nr
Match: gi|702362441|ref|XP_010060153.1| (PREDICTED: zinc finger CCCH domain-containing protein 15 homolog [Eucalyptus grandis])

HSP 1 Score: 107.5 bits (267), Expect = 1.1e-20
Identity = 56/80 (70.00%), Postives = 65/80 (81.25%), Query Frame = 1

Query: 1  MGAEEAAMEQEKNLSSHNPRTVPITEAQFLSWKRRKDAEASAKREETARKRAEDIALGAV 60
          MGAEE   E+EK  +  NP    I+ AQFLSWKRRKDAEASA++ E+ARKR+EDIA G V
Sbjct: 1  MGAEEG--EEEKRETKPNP----ISAAQFLSWKRRKDAEASARKAESARKRSEDIATGTV 60

Query: 61 QMNGRELFLHQPWVFDNSQY 81
          QMNGRELFLH+PWVFDN+QY
Sbjct: 61 QMNGRELFLHEPWVFDNTQY 74

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KN87_CUCSA6.1e-37100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G407070 PE=4 SV=1[more]
A0A061FNI6_THECC7.2e-2272.50Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_047076 PE=4 SV=1[more]
A0A0D2SMJ9_GOSRA1.2e-2168.75Uncharacterized protein OS=Gossypium raimondii GN=B456_010G044500 PE=4 SV=1[more]
A0A059BKG9_EUCGR8.0e-2170.00Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F00482 PE=4 SV=1[more]
A0A067K9E1_JATCU1.0e-2066.25Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11994 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G22140.12.8e-1758.82 unknown protein[more]
Match NameE-valueIdentityDescription
gi|449445110|ref|XP_004140316.1|8.7e-37100.00PREDICTED: zinc finger CCCH domain-containing protein 15 homolog [Cucumis sativu... [more]
gi|659121074|ref|XP_008460489.1|8.5e-3292.50PREDICTED: uncharacterized protein LOC103499290 isoform X2 [Cucumis melo][more]
gi|590598327|ref|XP_007018863.1|1.0e-2172.50Uncharacterized protein isoform 1 [Theobroma cacao][more]
gi|823238864|ref|XP_012452086.1|1.8e-2168.75PREDICTED: zinc finger CCCH domain-containing protein 15 homolog [Gossypium raim... [more]
gi|702362441|ref|XP_010060153.1|1.1e-2070.00PREDICTED: zinc finger CCCH domain-containing protein 15 homolog [Eucalyptus gra... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G14620.2CSPI05G14620.2mRNA
CSPI05G14620.1CSPI05G14620.1mRNA


Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 35..55
scor
NoneNo IPR availablePANTHERPTHR12681ZINC FINGER-CONTAINING PROTEIN P48ZNFcoord: 1..80
score: 7.6