Carg18249 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg18249
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	zinc finger CCCH domain-containing protein 15 homolog
Location	Cucurbita_argyrosperma_scaffold_120 : 217613 .. 219576 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAAAGTTAATCCAATTTTATTTCCTATATTTATTATTTATTTAGTTTAAATTTTACACTCTCTCCATCTCGAATATAACAGAGGTTGAAGCAGCAATCCATTGGAGAGGGGCTATCAAATCCAGGAATCTGATCTACGCTCAACAAAATGGGGGCAGAAGAAGCGGCTGTGGAGCAAGAGAAGCTCGCGTCTCATGATCCGAGCGCGAATCCCATCACGGAGGCTCAGTTCCTATCGTGGAAGCGCCACAAGGTACTTTCCCTTCTTCTTCTTCTTCTTCTTCTTCATCAATCTCCTCCAAGCTTTTCTTTGGCCGCTTTCCATTTCTGCTCTTTGATGTGCGATTGATCTGTATGAGTTCTTTTAGGTGCCGATTTCTTGTATTTCCTGCCAAATCAGTGAAATTCGAGAATTAGGGTTGCATAGATTGGGGGAGTTTTTTGAAAATTGAAATTATCACAATTTTAAATCTCAAGGATTCGTTCAATTAGGATGGTATTCAGGAATAGTTTCCTCTGTTGTGCGAAGATGAGGCTTAAATTTTGGGATTGTAACATGTATGAATGTACTTTATCTGGCTCGTGCCAAATAGACCTGAGGCTGAGACTGGATTTCTAGTCGATTGAGCTATACTTAGGTTGACAGAACGATTGACGATATTTAACGGACCATGAATGTACTTTTATCTGGCTCGTGCCAAATAGACTTGAGGCTGAGGCTGAGACTGGACTTCTAGTGGATTGAGCTATACTTAGGTTGACAGAACGATTGACGATATGTAACGGATCAAAACAGACAATATCTATTAACGATAGGCTTGAGCTATTACAAATGGTATTAGAGCCAGACACTAGACGGTAGCCTGCGAGGACTCTATAGTCTTAAGAGGGGTGGATTGTGAGATCCTACATCTATTGGAGAGGGGAAAGAAACATTCCCTATAAGAGAGTGGAAATCTCTCCCTAGCAGACACATTTTGAAATCGTGAGGCTGACAACGATACGTAATGGGCTAAATCGGACAATATCTGCTAGCGGTAGGCTTGAGCTATTACAGGCTATCTTGAAATTATAAGGCTATTAACATTCTAAACTCACATGCTTCACAATTGATTGTCAGTGGCAGAAACACAGGTTGGTTCTTGTAAGTTCAAGTTAACTAATCACTGAACTGCAAAGAACCTGAACCATTCCACCAGTCAATTATGAGGCAATTTATGCATCAGTGACGTAAATGAGTTGTGTTGCTGTTCGACATTTATCTCCAACTATCCTCCTCTTATTTGCAGGATGCCGAGGCATCTGCTAAAAGAGATGAAACAGCAAGGAAGCGTGCGGAGGATATAGCCTCAGGAGCGGTGCAAATGAATGGGCGAGAGCTTTTCTTGCACCAACCGTGGGTTTTTGACAACACTCAATATTGAGGTTGGTGTTTTAGTTTAGTACCACTTTCTGTTGTTTCTTGAGAAATGTCTGTCCTTTAAAATGCTACCTTGTATTTTAATCAGCATATCCTTCATACAAAGCATTAGTTCTTACGCCCAAAATGCTATCCTCATATATGAATCTGTGCAAAAGGAATGACTTGACCCAATTGGTTCTAGACAAAGATGTATATCCAAATATAGGCGCTAATTTGTCCTATGCTGTTAGCCTCATATGAACTTTATGATATGCATTTGTCTTCTCTAGTTTACAAATCACGTGTTAACAAAATGTTGTGTTTTTTCCTTTACTAGGTCCTTACATGATGAAATGTTTTTCATGTGGGAATAAAAATCATGATGTGTAGTGTCCATTGTTATAGGCGCTACTTTACTTAGTGCAATCGTGCGTACCCAAGTGTAACGAATCGATTTTCTTTTGTGAACGTACTGGTCTAAGCTGAGCTTACTTATAAATTGTTTTGTAATTTAAAAACAAATGAAAGAATACCCATAGATAGCAAAGTAAAATCATC

mRNA sequence

AAAAAAAAAGTTAATCCAATTTTATTTCCTATATTTATTATTTATTTAGTTTAAATTTTACACTCTCTCCATCTCGAATATAACAGAGGTTGAAGCAGCAATCCATTGGAGAGGGGCTATCAAATCCAGGAATCTGATCTACGCTCAACAAAATGGGGGCAGAAGAAGCGGCTGTGGAGCAAGAGAAGCTCGCGTCTCATGATCCGAGCGCGAATCCCATCACGGAGGCTCAGTTCCTATCGTGGAAGCGCCACAAGGATGCCGAGGCATCTGCTAAAAGAGATGAAACAGCAAGGAAGCGTGCGGAGGATATAGCCTCAGGAGCGGTGCAAATGAATGGGCGAGAGCTTTTCTTGCACCAACCGTGGGTTTTTGACAACACTCAATATTGAGGTTGGTGTTTTAGTTTAGTACCACTTTCTGTTGTTTCTTGAGAAATGTCTGTCCTTTAAAATGCTACCTTGTATTTTAATCAGCATATCCTTCATACAAAGCATTAGTTCTTACGCCCAAAATGCTATCCTCATATATGAATCTGTGCAAAAGGAATGACTTGACCCAATTGGTTCTAGACAAAGATGTATATCCAAATATAGGCGCTAATTTGTCCTATGCTGTTAGCCTCATATGAACTTTATGATATGCATTTGTCTTCTCTAGTTTACAAATCACGTGTTAACAAAATGTTGTGTTTTTTCCTTTACTAGGTCCTTACATGATGAAATGTTTTTCATGTGGGAATAAAAATCATGATGTGTAGTGTCCATTGTTATAGGCGCTACTTTACTTAGTGCAATCGTGCGTACCCAAGTGTAACGAATCGATTTTCTTTTGTGAACGTACTGGTCTAAGCTGAGCTTACTTATAAATTGTTTTGTAATTTAAAAACAAATGAAAGAATACCCATAGATAGCAAAGTAAAATCATC

Coding sequence (CDS)

ATGGGGGCAGAAGAAGCGGCTGTGGAGCAAGAGAAGCTCGCGTCTCATGATCCGAGCGCGAATCCCATCACGGAGGCTCAGTTCCTATCGTGGAAGCGCCACAAGGATGCCGAGGCATCTGCTAAAAGAGATGAAACAGCAAGGAAGCGTGCGGAGGATATAGCCTCAGGAGCGGTGCAAATGAATGGGCGAGAGCTTTTCTTGCACCAACCGTGGGTTTTTGACAACACTCAATATTGA

Protein sequence

MGAEEAAVEQEKLASHDPSANPITEAQFLSWKRHKDAEASAKRDETARKRAEDIASGAVQMNGRELFLHQPWVFDNTQY

Homology

[Close]

BLAST of Carg18249 vs. NCBI nr
Match: XP_022990599.1 (zinc finger CCCH domain-containing protein 15 homolog [Cucurbita maxima] >XP_023545022.1 zinc finger CCCH domain-containing protein 15 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 158.7 bits (400), Expect = 8.2e-36
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MGAEEAAVEQEKLASHDPSANPITEAQFLSWKRHKDAEASAKRDETARKRAEDIASGAVQ 60
          MGAEEAAVEQEKLASHDPSANPITEAQFLSWKRHKDAEASAKRDETARKRAEDIASGAVQ
Sbjct: 1  MGAEEAAVEQEKLASHDPSANPITEAQFLSWKRHKDAEASAKRDETARKRAEDIASGAVQ 60

Query: 61 MNGRELFLHQPWVFDNTQY 80
          MNGRELFLHQPWVFDNTQY
Sbjct: 61 MNGRELFLHQPWVFDNTQY 79

[Close]

BLAST of Carg18249 vs. NCBI nr
Match: XP_022963450.1 (zinc finger CCCH domain-containing protein 15 homolog [Cucurbita moschata])

HSP 1 Score: 154.5 bits (389), Expect = 1.5e-34
Identity = 76/79 (96.20%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 1  MGAEEAAVEQEKLASHDPSANPITEAQFLSWKRHKDAEASAKRDETARKRAEDIASGAVQ 60
          MGAEEA VE+EKL+SHDPSANPITEAQFLSWKRHKDAEASAKRDETARKRAEDIASGAVQ
Sbjct: 1  MGAEEAVVEREKLSSHDPSANPITEAQFLSWKRHKDAEASAKRDETARKRAEDIASGAVQ 60

Query: 61 MNGRELFLHQPWVFDNTQY 80
          MNGRELFLHQPWVFDNTQY
Sbjct: 61 MNGRELFLHQPWVFDNTQY 79

[Close]

BLAST of Carg18249 vs. NCBI nr
Match: XP_022141384.1 (zinc finger CCCH domain-containing protein 15 homolog [Momordica charantia])

HSP 1 Score: 139.8 bits (351), Expect = 3.9e-30
Identity = 71/81 (87.65%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 1  MGAEE--AAVEQEKLASHDPSANPITEAQFLSWKRHKDAEASAKRDETARKRAEDIASGA 60
          MGAEE  AA+E+EKL SH+P  NPITEAQFLSWKR KDAEASAKRDETARKRAEDIA+GA
Sbjct: 1  MGAEEAAAAMEKEKLTSHNPRTNPITEAQFLSWKRQKDAEASAKRDETARKRAEDIATGA 60

Query: 61 VQMNGRELFLHQPWVFDNTQY 80
          VQMNGRELFLHQPWVFDNTQY
Sbjct: 61 VQMNGRELFLHQPWVFDNTQY 81

[Close]

BLAST of Carg18249 vs. NCBI nr
Match: XP_022939418.1 (zinc finger CCCH domain-containing protein 15 homolog [Cucurbita moschata] >XP_023549915.1 zinc finger CCCH domain-containing protein 15 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 138.3 bits (347), Expect = 1.1e-29
Identity = 69/79 (87.34%), Postives = 73/79 (92.41%), Query Frame = 0


Query: 1  MGAEEAAVEQEKLASHDPSANPITEAQFLSWKRHKDAEASAKRDETARKRAEDIASGAVQ 60
          MGAEEAA+EQEKLAS +P   PITE QFLSWKR KDAEASAKRDETARKRA+DIASGAVQ
Sbjct: 1  MGAEEAAMEQEKLASRNPRTIPITETQFLSWKRQKDAEASAKRDETARKRADDIASGAVQ 60

Query: 61 MNGRELFLHQPWVFDNTQY 80
          MNGRELFLHQPWVFDN+QY
Sbjct: 61 MNGRELFLHQPWVFDNSQY 79

[Close]

BLAST of Carg18249 vs. NCBI nr
Match: XP_022992866.1 (zinc finger CCCH domain-containing protein 15 homolog [Cucurbita maxima])

HSP 1 Score: 134.8 bits (338), Expect = 1.3e-28
Identity = 68/79 (86.08%), Postives = 72/79 (91.14%), Query Frame = 0


Query: 1  MGAEEAAVEQEKLASHDPSANPITEAQFLSWKRHKDAEASAKRDETARKRAEDIASGAVQ 60
          M AEEAA+EQEKLAS +P   PITE QFLSWKR KDAEASAKRDETARKRA+DIASGAVQ
Sbjct: 1  MVAEEAAMEQEKLASRNPRTIPITETQFLSWKRQKDAEASAKRDETARKRADDIASGAVQ 60

Query: 61 MNGRELFLHQPWVFDNTQY 80
          MNGRELFLHQPWVFDN+QY
Sbjct: 61 MNGRELFLHQPWVFDNSQY 79

[Close]

BLAST of Carg18249 vs. TAIR10
Match: AT1G22140.1 (unknown protein)

HSP 1 Score: 85.1 bits (209), Expect = 2.1e-17
Identity = 41/62 (66.13%), Postives = 49/62 (79.03%), Query Frame = 0


Query: 18 PSANPITEAQFLSWKRHKDAEASAKRDETARKRAEDIASGAVQMNGRELFLHQPWVFDNT 77
          P+   I++ QFL+WKR KDAE  AK+ E ARKR EDIASG V MNGRELFLH+PWVFD+T
Sbjct: 11 PTQISISKDQFLAWKRQKDAELLAKQAEAARKRQEDIASGRVPMNGRELFLHEPWVFDDT 70

Query: 78 QY 80
           +
Sbjct: 71 HH 72

[Close]

BLAST of Carg18249 vs. TrEMBL
Match: tr|A0A0A0KN87|A0A0A0KN87_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G407070 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.1e-28
Identity = 69/80 (86.25%), Postives = 74/80 (92.50%), Query Frame = 0


Query: 1  MGAEEAAVEQEK-LASHDPSANPITEAQFLSWKRHKDAEASAKRDETARKRAEDIASGAV 60
          MGAEEAA+EQEK L+SH+P   PITEAQFLSWKR KDAEASAKR+ETARKRAEDIA GAV
Sbjct: 1  MGAEEAAMEQEKNLSSHNPRTVPITEAQFLSWKRRKDAEASAKREETARKRAEDIALGAV 60

Query: 61 QMNGRELFLHQPWVFDNTQY 80
          QMNGRELFLHQPWVFDN+QY
Sbjct: 61 QMNGRELFLHQPWVFDNSQY 80

[Close]

BLAST of Carg18249 vs. TrEMBL
Match: tr|A0A1S3CCP9|A0A1S3CCP9_CUCME (zinc finger CCCH domain-containing protein 15 homolog isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499290 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.9e-28
Identity = 67/79 (84.81%), Postives = 72/79 (91.14%), Query Frame = 0


Query: 1  MGAEEAAVEQEKLASHDPSANPITEAQFLSWKRHKDAEASAKRDETARKRAEDIASGAVQ 60
          MG EEAA+EQEKL+ ++P   PITEAQFLSWKR KDAEASAKRDETARKRAEDIA GAVQ
Sbjct: 1  MGDEEAAMEQEKLSCNNPRTVPITEAQFLSWKRQKDAEASAKRDETARKRAEDIALGAVQ 60

Query: 61 MNGRELFLHQPWVFDNTQY 80
          MNGRELFLHQPWVFDN+QY
Sbjct: 61 MNGRELFLHQPWVFDNSQY 79

[Close]

BLAST of Carg18249 vs. TrEMBL
Match: tr|F6H0V1|F6H0V1_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_18s0001g04880 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 5.8e-22
Identity = 54/79 (68.35%), Postives = 67/79 (84.81%), Query Frame = 0


Query: 1   MGAEEAAVEQEKLASHDPSANPITEAQFLSWKRHKDAEASAKRDETARKRAEDIASGAVQ 60
           MGAEE  V++ + +   P+ NP+++AQFLSWKR KDA+ SA+RDE ARKR EDIA+GAVQ
Sbjct: 76  MGAEEEKVQENEKSR--PTQNPMSQAQFLSWKRQKDADVSARRDEAARKRVEDIAAGAVQ 135

Query: 61  MNGRELFLHQPWVFDNTQY 80
           MNGRELFLH+PWVFDNT+Y
Sbjct: 136 MNGRELFLHEPWVFDNTRY 152

[Close]

BLAST of Carg18249 vs. TrEMBL
Match: tr|A0A0D2SMJ9|A0A0D2SMJ9_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_010G044500 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 7.6e-22
Identity = 55/79 (69.62%), Postives = 65/79 (82.28%), Query Frame = 0


Query: 1  MGAEEAAVEQEKLASHDPSANPITEAQFLSWKRHKDAEASAKRDETARKRAEDIASGAVQ 60
          MGAEE   +Q K  +  P+ NPITE+QFL+WKR KDA+ SAK+ E ARKRAEDIA+G VQ
Sbjct: 1  MGAEE---DQRKQENEQPTNNPITESQFLAWKRQKDADTSAKKAEAARKRAEDIAAGTVQ 60

Query: 61 MNGRELFLHQPWVFDNTQY 80
          MNGRELFLH+PWVFDN+QY
Sbjct: 61 MNGRELFLHEPWVFDNSQY 76

[Close]

BLAST of Carg18249 vs. TrEMBL
Match: tr|A0A2P5R282|A0A2P5R282_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD22162 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 7.6e-22
Identity = 55/79 (69.62%), Postives = 65/79 (82.28%), Query Frame = 0


Query: 1  MGAEEAAVEQEKLASHDPSANPITEAQFLSWKRHKDAEASAKRDETARKRAEDIASGAVQ 60
          MGAEE   +Q K  +  P+ NPITE+QFL+WKR KDA+ SAK+ E ARKRAEDIA+G VQ
Sbjct: 1  MGAEE---DQRKQENEQPTNNPITESQFLAWKRQKDADTSAKKAEAARKRAEDIAAGTVQ 60

Query: 61 MNGRELFLHQPWVFDNTQY 80
          MNGRELFLH+PWVFDN+QY
Sbjct: 61 MNGRELFLHEPWVFDNSQY 76

The following BLAST results are available for this feature:

BLAST of Carg18249 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022990599.1	8.2e-36	100.00	zinc finger CCCH domain-containing protein 15 homolog [Cucurbita maxima] >XP_023...	[more]
XP_022963450.1	1.5e-34	96.20	zinc finger CCCH domain-containing protein 15 homolog [Cucurbita moschata]	[more]
XP_022141384.1	3.9e-30	87.65	zinc finger CCCH domain-containing protein 15 homolog [Momordica charantia]	[more]
XP_022939418.1	1.1e-29	87.34	zinc finger CCCH domain-containing protein 15 homolog [Cucurbita moschata] >XP_0...	[more]
XP_022992866.1	1.3e-28	86.08	zinc finger CCCH domain-containing protein 15 homolog [Cucurbita maxima]	[more]

BLAST of Carg18249 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G22140.1	2.1e-17	66.13	unknown protein	[more]

BLAST of Carg18249 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg18249 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KN87\|A0A0A0KN87_CUCSA	1.1e-28	86.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G407070 PE=4 SV=1	[more]
tr\|A0A1S3CCP9\|A0A1S3CCP9_CUCME	1.9e-28	84.81	zinc finger CCCH domain-containing protein 15 homolog isoform X2 OS=Cucumis melo...	[more]
tr\|F6H0V1\|F6H0V1_VITVI	5.8e-22	68.35	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_18s0001g04880 PE=4 SV=...	[more]
tr\|A0A0D2SMJ9\|A0A0D2SMJ9_GOSRA	7.6e-22	69.62	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_010G044500 PE=4 ...	[more]
tr\|A0A2P5R282\|A0A2P5R282_GOSBA	7.6e-22	69.62	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD22162 PE=4 SV...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR032378	ZC3H15/TMA46_C

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18249-RA	Carg18249-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032378	ZC3H15/TMA46 family, C-terminal	PFAM	PF16543	DFRP_C	coord: 8..75 e-value: 1.3E-8 score: 35.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..51
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..51
None	No IPR available	PANTHER	PTHR12681	ZINC FINGER-CONTAINING PROTEIN P48ZNF	coord: 9..79

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg18249	Cla002152	Watermelon (97103) v1	carwmB0522
Carg18249	Csa5G407070	Cucumber (Chinese Long) v2	carcuB0556
Carg18249	MELO3C022803	Melon (DHL92) v3.5.1	carmeB0531
Carg18249	ClCG03G008950	Watermelon (Charleston Gray)	carwcgB0512
Carg18249	CSPI05G14620	Wild cucumber (PI 183967)	carcpiB0562
Carg18249	Cucsa.034550	Cucumber (Gy14) v1	carcgyB0604
Carg18249	CmaCh04G023140	Cucurbita maxima (Rimu)	carcmaB0738
Carg18249	CmaCh15G007260	Cucurbita maxima (Rimu)	carcmaB0737
Carg18249	CmoCh04G024200	Cucurbita moschata (Rifu)	carcmoB0716
Carg18249	CmoCh15G007490	Cucurbita moschata (Rifu)	carcmoB0714
Carg18249	Lsi09G009570	Bottle gourd (USVL1VR-Ls)	carlsiB480
Carg18249	Cp4.1LG13g04980	Cucurbita pepo (Zucchini)	carcpeB0746
Carg18249	Cp4.1LG01g20130	Cucurbita pepo (Zucchini)	carcpeB0747
Carg18249	CsGy5G014550	Cucumber (Gy14) v2	carcgybB0533
Carg18249	MELO3C022803.2	Melon (DHL92) v3.6.1	carmedB0536
Carg18249	CsaV3_5G023730	Cucumber (Chinese Long) v3	carcucB0564
Carg18249	Cla97C03G060140	Watermelon (97103) v2	carwmbB0554
Carg18249	Bhi12G001100	Wax gourd	carwgoB0637

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg18249	Carg01482	Silver-seed gourd	carcarB500

The following block(s) are covering this gene:


Gene	Organism	Block
Carg18249	Watermelon (97103) v1	carwmB0523