Cp4.1LG12g03060 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG12g03060
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionZinc finger protein, putative
LocationCp4.1LG12 : 2017198 .. 2017557 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGCTGTTTGGTTATTCAGTGACCGCTAGTGCCGAACCCAGCTTGGGTGCGCCATGTGCGAACCACATCAAGAGATTCCAGTGCCAATTTTGCGGCCGTGAGTTCGCCAATTCTCAAGCCCTCGGCGGCCACCAGAACGCCCACAAGCGCGAGCGCCAGCTCGCCAAACAACTCCTCCCTCGTAATTTTTTCACTCCCACGCCGCCGCCCTCCGCCGCCGGAAGATCTCCTCCGCCAAATTATGAAATGCCGGTGGAAGCGCCGCCCTCGGTTGGCGGCGGTGAAATTAACGGCGAAAATAATGGCGTTGATCTCCATCTCAGTCTCGCACCGTCCTCGACCAGGATCTTCTCTTAA

mRNA sequence

ATGAAGCTGTTTGGTTATTCAGTGACCGCTAGTGCCGAACCCAGCTTGGGTGCGCCATGTGCGAACCACATCAAGAGATTCCAGTGCCAATTTTGCGGCCGTGAGTTCGCCAATTCTCAAGCCCTCGGCGGCCACCAGAACGCCCACAAGCGCGAGCGCCAGCTCGCCAAACAACTCCTCCCTCGTAATTTTTTCACTCCCACGCCGCCGCCCTCCGCCGCCGGAAGATCTCCTCCGCCAAATTATGAAATGCCGGTGGAAGCGCCGCCCTCGGTTGGCGGCGGTGAAATTAACGGCGAAAATAATGGCGTTGATCTCCATCTCAGTCTCGCACCGTCCTCGACCAGGATCTTCTCTTAA

Coding sequence (CDS)

ATGAAGCTGTTTGGTTATTCAGTGACCGCTAGTGCCGAACCCAGCTTGGGTGCGCCATGTGCGAACCACATCAAGAGATTCCAGTGCCAATTTTGCGGCCGTGAGTTCGCCAATTCTCAAGCCCTCGGCGGCCACCAGAACGCCCACAAGCGCGAGCGCCAGCTCGCCAAACAACTCCTCCCTCGTAATTTTTTCACTCCCACGCCGCCGCCCTCCGCCGCCGGAAGATCTCCTCCGCCAAATTATGAAATGCCGGTGGAAGCGCCGCCCTCGGTTGGCGGCGGTGAAATTAACGGCGAAAATAATGGCGTTGATCTCCATCTCAGTCTCGCACCGTCCTCGACCAGGATCTTCTCTTAA

Protein sequence

MKLFGYSVTASAEPSLGAPCANHIKRFQCQFCGREFANSQALGGHQNAHKRERQLAKQLLPRNFFTPTPPPSAAGRSPPPNYEMPVEAPPSVGGGEINGENNGVDLHLSLAPSSTRIFS
Homology
[Close]
BLAST of Cp4.1LG12g03060 vs. Swiss-Prot
Match: ZFP6_ARATH (Zinc finger protein 6 OS=Arabidopsis thaliana GN=ZFP6 PE=2 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 4.9e-12
Identity = 48/130 (36.92%), Postives = 68/130 (52.31%), Query Frame = 1 

Query: 1   MKLFGYSV-------TASAEPSLGAPCANHIKRFQCQFCGREFANSQALGGHQNAHKRER 60
           +KLFG ++         S+EP  G+   +  ++++CQ+C REFANSQALGGHQNAHK+ER
Sbjct: 8   LKLFGINLLETTSVQNQSSEPRPGSGSGSESRKYECQYCCREFANSQALGGHQNAHKKER 67

Query: 61  QLAKQL-------LPRNF-FTPTPPPSAAGRSPPPNYEMPVEAPPSVGGGEINGENNGVD 116
           QL K+        LPR+  F P   P  +  +P P+       PP               
Sbjct: 68  QLLKRAQMLATRGLPRHHNFHPHTNPLLSAFAPLPHLLSQPHPPP--------------- 121

[Close]
BLAST of Cp4.1LG12g03060 vs. Swiss-Prot
Match: ZFP5_ARATH (Zinc finger protein 5 OS=Arabidopsis thaliana GN=ZFP5 PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.0e-09
Identity = 32/70 (45.71%), Postives = 42/70 (60.00%), Query Frame = 1 

Query: 1  MKLFGYSVTA-----------SAEPSLGAPCANHIKRFQCQFCGREFANSQALGGHQNAH 60
          +KLFG+ + +           S   S        +KR +CQ+CG+EFANSQALGGHQNAH
Sbjct: 23 IKLFGFELISGSRTPEITTAESVSSSTNTTSLTVMKRHECQYCGKEFANSQALGGHQNAH 82

[Close]
BLAST of Cp4.1LG12g03060 vs. Swiss-Prot
Match: GIS_ARATH (Zinc finger protein GIS OS=Arabidopsis thaliana GN=GIS PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.1e-09
Identity = 36/73 (49.32%), Postives = 45/73 (61.64%), Query Frame = 1 

Query: 22  NHIKRFQCQFCGREFANSQALGGHQNAHKRERQLAKQLLPRNFFTPTPPPSAAGRSPPPN 81
           +H +RF+C +C R F  SQALGGHQNAHKRERQLAK+ +   F+ P   P +  R  P  
Sbjct: 86  SHNRRFECHYCFRNFPTSQALGGHQNAHKRERQLAKRGVSSYFYHPDNNPYSY-RHYPSW 145

Query: 82  YEMPVEAPPSVGG 95
              P+ A  S GG
Sbjct: 146 TNGPLTAARSYGG 157

[Close]
BLAST of Cp4.1LG12g03060 vs. Swiss-Prot
Match: GIS2_ARATH (Zinc finger protein GIS2 OS=Arabidopsis thaliana GN=GIS2 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 5.6e-08
Identity = 32/68 (47.06%), Postives = 38/68 (55.88%), Query Frame = 1 

Query: 1  MKLFGYSVTASAEPSLGAPCANHI----------KRFQCQFCGREFANSQALGGHQNAHK 59
          ++LFG+   AS E S      N            KRF+C +C R F  SQALGGHQNAHK
Sbjct: 19 IRLFGFEFGASHEESESKDNYNENNESIKDDNKEKRFKCHYCFRNFPTSQALGGHQNAHK 78

[Close]
BLAST of Cp4.1LG12g03060 vs. Swiss-Prot
Match: ZFP8_ARATH (Zinc finger protein 8 OS=Arabidopsis thaliana GN=ZFP8 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 9.6e-08
Identity = 25/37 (67.57%), Postives = 30/37 (81.08%), Query Frame = 1 

Query: 22  NHIKRFQCQFCGREFANSQALGGHQNAHKRERQLAKQ 59
           N+ +RF+C +C R F  SQALGGHQNAHKRERQ AK+
Sbjct: 90  NNNRRFECHYCFRNFPTSQALGGHQNAHKRERQHAKR 126

[Close]
BLAST of Cp4.1LG12g03060 vs. TrEMBL
Match: A0A0A0KI02_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G312040 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 1.9e-39
Identity = 93/136 (68.38%), Postives = 103/136 (75.74%), Query Frame = 1 

Query: 1   MKLFGYSVTASAEPS-----LGAPCANHIKRFQCQFCGREFANSQALGGHQNAHKRERQL 60
           MKLFG+SVTAS   +     LGAPC NH KRF+CQFCGREFANSQALGGHQNAHKRERQL
Sbjct: 2   MKLFGFSVTASTTSTDGATNLGAPCPNHNKRFECQFCGREFANSQALGGHQNAHKRERQL 61

Query: 61  AKQLLP-------RNFFTPTPPPS-----AAGRSPPPNYEMPVEAPPS-VGGGEINGENN 119
           AKQLLP       RNF   TPP S     +AGR+PPP Y + V+A P+ VGGGE+N E+N
Sbjct: 62  AKQLLPLQPTKHSRNFLASTPPSSTVGIWSAGRAPPPKYGIQVQARPAVVGGGEVNRESN 121

[Close]
BLAST of Cp4.1LG12g03060 vs. TrEMBL
Match: F6H746_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0077g01390 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.1e-10
Identity = 63/170 (37.06%), Postives = 73/170 (42.94%), Query Frame = 1 

Query: 1   MKLFGYSVTASAEPSLGAPCANHIKRFQCQFCGREFANSQALGGHQNAHKRERQLAKQLL 60
           MKLFG+ VT + E  L       I++F+CQ+C REFANSQALGGHQNAHK+ERQ AK+  
Sbjct: 37  MKLFGFPVTEADEAPLTPSNDADIRKFECQYCRREFANSQALGGHQNAHKKERQRAKRAQ 96

Query: 61  -----PRNFFTPTP----------PPSAAGRSP---------------------PPNYEM 116
                 R F    P          P   AG S                      PP    
Sbjct: 97  FQTDHHRRFAAAVPILTAHAVRSGPFICAGGSSSMGSAARFRSSPECCVWSPGPPPMLPA 156

[Close]
BLAST of Cp4.1LG12g03060 vs. TrEMBL
Match: A0A067K6I8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18960 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 5.5e-10
Identity = 56/149 (37.58%), Postives = 71/149 (47.65%), Query Frame = 1 

Query: 1   MKLFGYSVTASAEPSLGAPCANHIKRFQCQFCGREFANSQALGGHQNAHKRERQLAKQ-- 60
           ++LFG++VT   + S+ A    + KRF+CQ+C R FANSQALGGHQNAHKRER  AK+  
Sbjct: 18  LRLFGFTVTDCEKSSVTA----YSKRFECQYCHRGFANSQALGGHQNAHKRERGRAKRAQ 77

Query: 61  -LLPRNFFTPTP----------PPSAAGRSPP--PNYEMPVEAPPSVGGGE--------- 115
               +   T  P          P S  G +        +   APPS GG           
Sbjct: 78  FTKVQRLITAIPIITKDSTGSRPSSICGSTGAGIATVSLCAPAPPSTGGAPQVVGPSGVG 137

[Close]
BLAST of Cp4.1LG12g03060 vs. TrEMBL
Match: K4AWE5_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 7.1e-10
Identity = 33/58 (56.90%), Postives = 42/58 (72.41%), Query Frame = 1 

Query: 1  MKLFGYSVTASAEPSLGAPCANHIKRFQCQFCGREFANSQALGGHQNAHKRERQLAKQ 59
          +KLFG+ VT   + +      +  KRF+CQFC REFANSQALGGHQNAHK+ERQ  ++
Sbjct: 18 VKLFGFQVTECDQTTPPPLVPSEDKRFECQFCHREFANSQALGGHQNAHKKERQRTRR 75

[Close]
BLAST of Cp4.1LG12g03060 vs. TrEMBL
Match: V7AZG7_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G253900g PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.6e-09
Identity = 59/151 (39.07%), Postives = 77/151 (50.99%), Query Frame = 1 

Query: 1   MKLFGYSVTASAEPSLGAPCANHIKRFQCQFCGREFANSQALGGHQNAHKRERQLAKQLL 60
           +KLFG+ +T  +  S  +P   H KRF+C FC REFANSQALGGHQNAHKRERQ A  L 
Sbjct: 32  LKLFGFPLTPPS--STVSPHCPH-KRFKCHFCYREFANSQALGGHQNAHKRERQKA-ALS 91

Query: 61  PRNFFTP----TPP-------------PSAAGRSPPPNYEMPVEAPPSVG---------- 119
           P  +F      TPP             P  A R    ++ + +  P   G          
Sbjct: 92  PFTYFLHHQRFTPPTHSPIVLPHGGSTPLVAPRDHHHHHRVGLVRPMGAGAISISTVRKV 151

[Close]
BLAST of Cp4.1LG12g03060 vs. TAIR10
Match: AT1G67030.1 (AT1G67030.1 zinc finger protein 6)

HSP 1 Score: 72.0 bits (175), Expect = 2.8e-13
Identity = 48/130 (36.92%), Postives = 68/130 (52.31%), Query Frame = 1 

Query: 1   MKLFGYSV-------TASAEPSLGAPCANHIKRFQCQFCGREFANSQALGGHQNAHKRER 60
           +KLFG ++         S+EP  G+   +  ++++CQ+C REFANSQALGGHQNAHK+ER
Sbjct: 8   LKLFGINLLETTSVQNQSSEPRPGSGSGSESRKYECQYCCREFANSQALGGHQNAHKKER 67

Query: 61  QLAKQL-------LPRNF-FTPTPPPSAAGRSPPPNYEMPVEAPPSVGGGEINGENNGVD 116
           QL K+        LPR+  F P   P  +  +P P+       PP               
Sbjct: 68  QLLKRAQMLATRGLPRHHNFHPHTNPLLSAFAPLPHLLSQPHPPP--------------- 121

[Close]
BLAST of Cp4.1LG12g03060 vs. TAIR10
Match: AT1G10480.1 (AT1G10480.1 zinc finger protein 5)

HSP 1 Score: 64.3 bits (155), Expect = 5.8e-11
Identity = 32/70 (45.71%), Postives = 42/70 (60.00%), Query Frame = 1 

Query: 1  MKLFGYSVTA-----------SAEPSLGAPCANHIKRFQCQFCGREFANSQALGGHQNAH 60
          +KLFG+ + +           S   S        +KR +CQ+CG+EFANSQALGGHQNAH
Sbjct: 23 IKLFGFELISGSRTPEITTAESVSSSTNTTSLTVMKRHECQYCGKEFANSQALGGHQNAH 82

[Close]
BLAST of Cp4.1LG12g03060 vs. TAIR10
Match: AT3G58070.1 (AT3G58070.1 C2H2 and C2HC zinc fingers superfamily protein)

HSP 1 Score: 62.0 bits (149), Expect = 2.9e-10
Identity = 36/73 (49.32%), Postives = 45/73 (61.64%), Query Frame = 1 

Query: 22  NHIKRFQCQFCGREFANSQALGGHQNAHKRERQLAKQLLPRNFFTPTPPPSAAGRSPPPN 81
           +H +RF+C +C R F  SQALGGHQNAHKRERQLAK+ +   F+ P   P +  R  P  
Sbjct: 86  SHNRRFECHYCFRNFPTSQALGGHQNAHKRERQLAKRGVSSYFYHPDNNPYSY-RHYPSW 145

Query: 82  YEMPVEAPPSVGG 95
              P+ A  S GG
Sbjct: 146 TNGPLTAARSYGG 157

[Close]
BLAST of Cp4.1LG12g03060 vs. TAIR10
Match: AT5G06650.1 (AT5G06650.1 C2H2 and C2HC zinc fingers superfamily protein)

HSP 1 Score: 58.5 bits (140), Expect = 3.2e-09
Identity = 32/68 (47.06%), Postives = 38/68 (55.88%), Query Frame = 1 

Query: 1  MKLFGYSVTASAEPSLGAPCANHI----------KRFQCQFCGREFANSQALGGHQNAHK 59
          ++LFG+   AS E S      N            KRF+C +C R F  SQALGGHQNAHK
Sbjct: 19 IRLFGFEFGASHEESESKDNYNENNESIKDDNKEKRFKCHYCFRNFPTSQALGGHQNAHK 78

[Close]
BLAST of Cp4.1LG12g03060 vs. TAIR10
Match: AT5G10970.1 (AT5G10970.1 C2H2 and C2HC zinc fingers superfamily protein)

HSP 1 Score: 58.2 bits (139), Expect = 4.1e-09
Identity = 27/50 (54.00%), Postives = 31/50 (62.00%), Query Frame = 1 

Query: 9   TASAEPSLGAPCANHIKRFQCQFCGREFANSQALGGHQNAHKRERQLAKQ 59
           T    PS     +   K F C +C R F +SQALGGHQNAHKRER LAK+
Sbjct: 86  TGVVTPSFNGSTSTEQKLFSCNYCQRTFYSSQALGGHQNAHKRERTLAKR 135

[Close]
BLAST of Cp4.1LG12g03060 vs. NCBI nr
Match: gi|449464754|ref|XP_004150094.1| (PREDICTED: zinc finger protein 6-like [Cucumis sativus])

HSP 1 Score: 169.9 bits (429), Expect = 2.8e-39
Identity = 93/136 (68.38%), Postives = 103/136 (75.74%), Query Frame = 1 

Query: 1   MKLFGYSVTASAEPS-----LGAPCANHIKRFQCQFCGREFANSQALGGHQNAHKRERQL 60
           MKLFG+SVTAS   +     LGAPC NH KRF+CQFCGREFANSQALGGHQNAHKRERQL
Sbjct: 1   MKLFGFSVTASTTSTDGATNLGAPCPNHNKRFECQFCGREFANSQALGGHQNAHKRERQL 60

Query: 61  AKQLLP-------RNFFTPTPPPS-----AAGRSPPPNYEMPVEAPPS-VGGGEINGENN 119
           AKQLLP       RNF   TPP S     +AGR+PPP Y + V+A P+ VGGGE+N E+N
Sbjct: 61  AKQLLPLQPTKHSRNFLASTPPSSTVGIWSAGRAPPPKYGIQVQARPAVVGGGEVNRESN 120

[Close]
BLAST of Cp4.1LG12g03060 vs. NCBI nr
Match: gi|700192197|gb|KGN47401.1| (hypothetical protein Csa_6G312040 [Cucumis sativus])

HSP 1 Score: 169.9 bits (429), Expect = 2.8e-39
Identity = 93/136 (68.38%), Postives = 103/136 (75.74%), Query Frame = 1 

Query: 1   MKLFGYSVTASAEPS-----LGAPCANHIKRFQCQFCGREFANSQALGGHQNAHKRERQL 60
           MKLFG+SVTAS   +     LGAPC NH KRF+CQFCGREFANSQALGGHQNAHKRERQL
Sbjct: 2   MKLFGFSVTASTTSTDGATNLGAPCPNHNKRFECQFCGREFANSQALGGHQNAHKRERQL 61

Query: 61  AKQLLP-------RNFFTPTPPPS-----AAGRSPPPNYEMPVEAPPS-VGGGEINGENN 119
           AKQLLP       RNF   TPP S     +AGR+PPP Y + V+A P+ VGGGE+N E+N
Sbjct: 62  AKQLLPLQPTKHSRNFLASTPPSSTVGIWSAGRAPPPKYGIQVQARPAVVGGGEVNRESN 121

[Close]
BLAST of Cp4.1LG12g03060 vs. NCBI nr
Match: gi|659117022|ref|XP_008458383.1| (PREDICTED: zinc finger protein 6-like [Cucumis melo])

HSP 1 Score: 164.5 bits (415), Expect = 1.2e-37
Identity = 90/134 (67.16%), Postives = 103/134 (76.87%), Query Frame = 1 

Query: 1   MKLFGYSVTASAEPS-----LGAPCANHIKRFQCQFCGREFANSQALGGHQNAHKRERQL 60
           MKLFG+SVTAS   +     LGAPC NH KRF+CQFCGREFANSQALGGHQNAHKRERQL
Sbjct: 2   MKLFGFSVTASTTTTEGAIKLGAPCPNHDKRFECQFCGREFANSQALGGHQNAHKRERQL 61

Query: 61  AKQLLP-------RNFFTPTPPPS----AAGRSPPPNYEMPVEAPPS-VGGGEINGENNG 118
           AKQLLP       RNFFT TPP +    +AGR+PPP   + V+A P+ VGGG+++ E+NG
Sbjct: 62  AKQLLPLHPTKHSRNFFTSTPPSTIGIWSAGRAPPPKDGIQVQARPAVVGGGDVSRESNG 121

[Close]
BLAST of Cp4.1LG12g03060 vs. NCBI nr
Match: gi|672175470|ref|XP_008807788.1| (PREDICTED: zinc finger protein 6-like [Phoenix dactylifera])

HSP 1 Score: 88.2 bits (217), Expect = 1.1e-14
Identity = 59/143 (41.26%), Postives = 72/143 (50.35%), Query Frame = 1 

Query: 1   MKLFGYSVTASAEPS-LGAPCANHIKRFQCQFCGREFANSQALGGHQNAHKRERQLAKQL 60
           M+LFG++VT   E    G       +RF+CQ+C REFANSQALGGHQNAHK+ERQ AK+ 
Sbjct: 9   MRLFGFAVTEPGEDDHRGGSSGEGGRRFECQYCRREFANSQALGGHQNAHKKERQRAKRA 68

Query: 61  ---LPRNFFTPTPP----------PSAAGRSPPPNYEM---------------PVEAPPS 115
                R F  P P           P+AA   PPP +                 P  +PP 
Sbjct: 69  QFHAARRFALPAPHHPLPRAAFWCPTAAASPPPPPFPAPPLHVPLSSWPSAPPPPPSPPF 128

[Close]
BLAST of Cp4.1LG12g03060 vs. NCBI nr
Match: gi|743868952|ref|XP_010905700.1| (PREDICTED: zinc finger protein 6-like [Elaeis guineensis])

HSP 1 Score: 84.3 bits (207), Expect = 1.5e-13
Identity = 59/140 (42.14%), Postives = 73/140 (52.14%), Query Frame = 1 

Query: 1   MKLFGYSVTASAEPS-LGAPCANHIKRFQCQFCGREFANSQALGGHQNAHKRERQLAKQL 60
           ++LFG++VT   E    G       +RF+CQ+C REFANSQALGGHQNAHK+ERQ AK+ 
Sbjct: 9   VRLFGFAVTEPGEDDHRGGGSVEGGRRFECQYCRREFANSQALGGHQNAHKKERQRAKRA 68

Query: 61  ---LPRNFFTPTPP----------PSAAGRSPP---PNYEM---------PVEAPPSVGG 115
                R F  P P           PSAA  +PP   P   +         P  +PP   G
Sbjct: 69  QFHAARRFALPAPHHPLARAAFWCPSAATSTPPFPAPPLHVQLSAWPCAPPPPSPPCATG 128

The following BLAST results are available for this feature:
BLAST of Cp4.1LG12g03060 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ZFP6_ARATH4.9e-1236.92Zinc finger protein 6 OS=Arabidopsis thaliana GN=ZFP6 PE=2 SV=1[more]
ZFP5_ARATH1.0e-0945.71Zinc finger protein 5 OS=Arabidopsis thaliana GN=ZFP5 PE=2 SV=1[more]
GIS_ARATH5.1e-0949.32Zinc finger protein GIS OS=Arabidopsis thaliana GN=GIS PE=2 SV=1[more]
GIS2_ARATH5.6e-0847.06Zinc finger protein GIS2 OS=Arabidopsis thaliana GN=GIS2 PE=2 SV=1[more]
ZFP8_ARATH9.6e-0867.57Zinc finger protein 8 OS=Arabidopsis thaliana GN=ZFP8 PE=2 SV=1[more]
BLAST of Cp4.1LG12g03060 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KI02_CUCSA1.9e-3968.38Uncharacterized protein OS=Cucumis sativus GN=Csa_6G312040 PE=4 SV=1[more]
F6H746_VITVI1.1e-1037.06Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0077g01390 PE=4 SV=... [more]
A0A067K6I8_JATCU5.5e-1037.58Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18960 PE=4 SV=1[more]
K4AWE5_SOLLC7.1e-1056.90Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
V7AZG7_PHAVU1.6e-0939.07Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G253900g PE=4 SV=1[more]
BLAST of Cp4.1LG12g03060 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G67030.12.8e-1336.92 zinc finger protein 6[more]
AT1G10480.15.8e-1145.71 zinc finger protein 5[more]
AT3G58070.12.9e-1049.32 C2H2 and C2HC zinc fingers superfamily protein[more]
AT5G06650.13.2e-0947.06 C2H2 and C2HC zinc fingers superfamily protein[more]
AT5G10970.14.1e-0954.00 C2H2 and C2HC zinc fingers superfamily protein[more]
BLAST of Cp4.1LG12g03060 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449464754|ref|XP_004150094.1|2.8e-3968.38PREDICTED: zinc finger protein 6-like [Cucumis sativus][more]
gi|700192197|gb|KGN47401.1|2.8e-3968.38hypothetical protein Csa_6G312040 [Cucumis sativus][more]
gi|659117022|ref|XP_008458383.1|1.2e-3767.16PREDICTED: zinc finger protein 6-like [Cucumis melo][more]
gi|672175470|ref|XP_008807788.1|1.1e-1441.26PREDICTED: zinc finger protein 6-like [Phoenix dactylifera][more]
gi|743868952|ref|XP_010905700.1|1.5e-1342.14PREDICTED: zinc finger protein 6-like [Elaeis guineensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0046872metal ion binding
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR007087Zinc finger, C2H2
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0009755 hormone-mediated signaling pathway
biological_process GO:0001101 response to acid chemical
biological_process GO:1901700 response to oxygen-containing compound
cellular_component GO:0005575 cellular_component
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g03060.1Cp4.1LG12g03060.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007087Zinc finger, C2H2PROSITEPS00028ZINC_FINGER_C2H2_1coord: 29..49
scor
IPR007087Zinc finger, C2H2PROFILEPS50157ZINC_FINGER_C2H2_2coord: 27..54
score: 12
IPR013087Zinc finger C2H2-type/integrase DNA-binding domainGENE3DG3DSA:3.30.160.60coord: 25..53
score: 9.
NoneNo IPR availableunknownSSF57667beta-beta-alpha zinc fingerscoord: 25..55
score: 6.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG12g03060Cucsa.069470Cucumber (Gy14) v1cgycpeB0107
Cp4.1LG12g03060CmaCh17G003540Cucurbita maxima (Rimu)cmacpeB371
Cp4.1LG12g03060CmaCh08G012570Cucurbita maxima (Rimu)cmacpeB895
Cp4.1LG12g03060CmoCh08G012270Cucurbita moschata (Rifu)cmocpeB833
Cp4.1LG12g03060CmoCh17G003430Cucurbita moschata (Rifu)cmocpeB335
Cp4.1LG12g03060Cla009266Watermelon (97103) v1cpewmB161
Cp4.1LG12g03060Csa6G312040Cucumber (Chinese Long) v2cpecuB151
Cp4.1LG12g03060MELO3C021287Melon (DHL92) v3.5.1cpemeB112
Cp4.1LG12g03060ClCG06G004780Watermelon (Charleston Gray)cpewcgB144
Cp4.1LG12g03060CSPI06G17200Wild cucumber (PI 183967)cpecpiB153
Cp4.1LG12g03060Lsi09G014690Bottle gourd (USVL1VR-Ls)cpelsiB101
Cp4.1LG12g03060MELO3C021287.2Melon (DHL92) v3.6.1cpemedB138
Cp4.1LG12g03060CsaV3_6G022570Cucumber (Chinese Long) v3cpecucB0175
Cp4.1LG12g03060Bhi12G001700Wax gourdcpewgoB0173
Cp4.1LG12g03060CsGy6G016690Cucumber (Gy14) v2cgybcpeB731
Cp4.1LG12g03060Carg18870Silver-seed gourdcarcpeB0984
Cp4.1LG12g03060Carg05531Silver-seed gourdcarcpeB0099
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG12g03060Cp4.1LG17g00450Cucurbita pepo (Zucchini)cpecpeB158
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG12g03060Cucumber (Chinese Long) v3cpecucB0149
Cp4.1LG12g03060Cucumber (Chinese Long) v3cpecucB0154
Cp4.1LG12g03060Wax gourdcpewgoB0186
Cp4.1LG12g03060Wax gourdcpewgoB0188
Cp4.1LG12g03060Cucurbita pepo (Zucchini)cpecpeB109
Cp4.1LG12g03060Cucurbita pepo (Zucchini)cpecpeB184
Cp4.1LG12g03060Cucurbita pepo (Zucchini)cpecpeB194
Cp4.1LG12g03060Cucumber (Gy14) v1cgycpeB0671
Cp4.1LG12g03060Cucurbita maxima (Rimu)cmacpeB812
Cp4.1LG12g03060Cucurbita moschata (Rifu)cmocpeB225
Cp4.1LG12g03060Cucurbita moschata (Rifu)cmocpeB766
Cp4.1LG12g03060Wild cucumber (PI 183967)cpecpiB133
Cp4.1LG12g03060Cucumber (Chinese Long) v2cpecuB132
Cp4.1LG12g03060Bottle gourd (USVL1VR-Ls)cpelsiB118
Cp4.1LG12g03060Watermelon (Charleston Gray)cpewcgB139
Cp4.1LG12g03060Watermelon (97103) v1cpewmB152
Cp4.1LG12g03060Melon (DHL92) v3.5.1cpemeB140
Cp4.1LG12g03060Cucumber (Gy14) v2cgybcpeB179
Cp4.1LG12g03060Cucumber (Gy14) v2cgybcpeB303
Cp4.1LG12g03060Melon (DHL92) v3.6.1cpemedB169
Cp4.1LG12g03060Melon (DHL92) v3.6.1cpemedB170
Cp4.1LG12g03060Silver-seed gourdcarcpeB0393