Carg18870 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg18870
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Zinc finger protein
Location	Cucurbita_argyrosperma_scaffold_162 : 204804 .. 205175 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCTGTTTGGTTTTTCAGTGACGGCTAGTGATCAAGCCACCATGGGTGCGCCATGCGCGAACCTCAACAAGGACGATAAGCGATTCGAGTGCCAATTCTGTGGCCGTGAGTTCGCCAATTCTCAAGCTCTCGGCGGCCACCAGAACGCCCACAAGCGCGAGCGCCAGCTCGCCAAACAACTCCGTTTCGATCCCAATAAACATCCTCGTTTTTTCACTTCCACGCCGCCGCCCTCCGCCACCGTCATCTGGTCCAGATCTGGTGGTGCTCCGCCGTCTGCTGCTGGTGGTGGTGGTGGTGAAGTGAATGGGGAAAATGGCGTTGATCTCCACCTCAGTCTCGCGCCATCCTCAAGGATCTTCTGTTAA

mRNA sequence

ATGAAGCTGTTTGGTTTTTCAGTGACGGCTAGTGATCAAGCCACCATGGGTGCGCCATGCGCGAACCTCAACAAGGACGATAAGCGATTCGAGTGCCAATTCTGTGGCCGTGAGTTCGCCAATTCTCAAGCTCTCGGCGGCCACCAGAACGCCCACAAGCGCGAGCGCCAGCTCGCCAAACAACTCCGTTTCGATCCCAATAAACATCCTCGTTTTTTCACTTCCACGCCGCCGCCCTCCGCCACCGTCATCTGGTCCAGATCTGGTGGTGCTCCGCCGTCTGCTGCTGGTGGTGGTGGTGGTGAAGTGAATGGGGAAAATGGCGTTGATCTCCACCTCAGTCTCGCGCCATCCTCAAGGATCTTCTGTTAA

Coding sequence (CDS)

ATGAAGCTGTTTGGTTTTTCAGTGACGGCTAGTGATCAAGCCACCATGGGTGCGCCATGCGCGAACCTCAACAAGGACGATAAGCGATTCGAGTGCCAATTCTGTGGCCGTGAGTTCGCCAATTCTCAAGCTCTCGGCGGCCACCAGAACGCCCACAAGCGCGAGCGCCAGCTCGCCAAACAACTCCGTTTCGATCCCAATAAACATCCTCGTTTTTTCACTTCCACGCCGCCGCCCTCCGCCACCGTCATCTGGTCCAGATCTGGTGGTGCTCCGCCGTCTGCTGCTGGTGGTGGTGGTGGTGAAGTGAATGGGGAAAATGGCGTTGATCTCCACCTCAGTCTCGCGCCATCCTCAAGGATCTTCTGTTAA

Protein sequence

MKLFGFSVTASDQATMGAPCANLNKDDKRFECQFCGREFANSQALGGHQNAHKRERQLAKQLRFDPNKHPRFFTSTPPPSATVIWSRSGGAPPSAAGGGGGEVNGENGVDLHLSLAPSSRIFC

Homology

[Close]

BLAST of Carg18870 vs. NCBI nr
Match: XP_023514440.1 (zinc finger protein 6-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 186.0 bits (471), Expect = 7.5e-44
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MKLFGFSVTASDQATMGAPCANLNKDDKRFECQFCGREFANSQALGGHQNAHKRERQLAK 60
           MKLFGFSVTASDQATMGAPCANLNKDDKRFECQFCGREFANSQALGGHQNAHKRERQLAK
Sbjct: 1   MKLFGFSVTASDQATMGAPCANLNKDDKRFECQFCGREFANSQALGGHQNAHKRERQLAK 60

Query: 61  QLRFDPNKHPRFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVNGENGVDLHLSLAPSSR 120
           QLRFDPNKHPRFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVNGENGVDLHLSLAPSSR
Sbjct: 61  QLRFDPNKHPRFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVNGENGVDLHLSLAPSSR 120

Query: 121 IFC 124
           IFC
Sbjct: 121 IFC 123

[Close]

BLAST of Carg18870 vs. NCBI nr
Match: XP_022930487.1 (zinc finger protein 6-like [Cucurbita moschata] >XP_023000211.1 zinc finger protein 6-like [Cucurbita maxima])

HSP 1 Score: 181.8 bits (460), Expect = 1.4e-42
Identity = 121/123 (98.37%), Postives = 121/123 (98.37%), Query Frame = 0


Query: 1   MKLFGFSVTASDQATMGAPCANLNKDDKRFECQFCGREFANSQALGGHQNAHKRERQLAK 60
           MKLFGFSVTASDQATMGAPCANLNKDDKRFECQFCGREFANSQALGGHQNAHKRERQLAK
Sbjct: 1   MKLFGFSVTASDQATMGAPCANLNKDDKRFECQFCGREFANSQALGGHQNAHKRERQLAK 60

Query: 61  QLRFDPNKHPRFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVNGENGVDLHLSLAPSSR 120
           QLRFDPNKHPRF XXXXXXXXXXXXXXXXXXXXXXXXXXXX VNGENGVDLHLSLAPSSR
Sbjct: 61  QLRFDPNKHPRF-XXXXXXXXXXXXXXXXXXXXXXXXXXXXEVNGENGVDLHLSLAPSSR 120

Query: 121 IFC 124
           IFC
Sbjct: 121 IFC 122

[Close]

BLAST of Carg18870 vs. NCBI nr
Match: XP_022138610.1 (zinc finger protein 5-like [Momordica charantia])

HSP 1 Score: 127.1 bits (318), Expect = 4.1e-26
Identity = 73/132 (55.30%), Postives = 79/132 (59.85%), Query Frame = 0


Query: 1   MKLFGFSVT--ASDQATMGAPCANLNKDDKRFECQFCGREFANSQALGGHQNAHKRERQL 60
           MKLFGFSVT  A +     A  A  NKD+KRFECQFCGR+FANSQALGGHQNAHKRER L
Sbjct: 1   MKLFGFSVTAGAGEGNVRDAAAARANKDEKRFECQFCGRDFANSQALGGHQNAHKRERHL 60

Query: 61  AKQLRFD-------PNKHPRFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVNGENGVDL 120
           AKQLRFD        NKHPRF                              + G+NGVDL
Sbjct: 61  AKQLRFDSNNHRRQQNKHPRF--------------LSSTLPPAAPPPLADEMYGDNGVDL 118

Query: 121 HLSLAPSSRIFC 124
           HL+LAPSS IFC
Sbjct: 121 HLTLAPSSGIFC 118

[Close]

BLAST of Carg18870 vs. NCBI nr
Match: XP_004150094.1 (PREDICTED: zinc finger protein 6-like [Cucumis sativus])

HSP 1 Score: 116.3 bits (290), Expect = 7.3e-23
Identity = 77/140 (55.00%), Postives = 79/140 (56.43%), Query Frame = 0


Query: 1   MKLFGFSVTASDQAT-----MGAPCANLNKDDKRFECQFCGREFANSQALGGHQNAHKRE 60
           MKLFGFSVTAS  +T     +GAPC N N   KRFECQFCGREFANSQALGGHQNAHKRE
Sbjct: 1   MKLFGFSVTASTTSTDGATNLGAPCPNHN---KRFECQFCGREFANSQALGGHQNAHKRE 60

Query: 61  RQLAKQ-LRFDPNKH---------PRFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVNG 120
           RQLAKQ L   P KH         P                                VN 
Sbjct: 61  RQLAKQLLPLQPTKHSRNFLASTPPSSTVGIWSAGRAPPPKYGIQVQARPAVVGGGEVNR 120

Query: 121 E-NGVDLHLSLAPSS-RIFC 124
           E NGVDLHLSLAPSS RIFC
Sbjct: 121 ESNGVDLHLSLAPSSGRIFC 137

[Close]

BLAST of Carg18870 vs. NCBI nr
Match: KGN47401.1 (hypothetical protein Csa_6G312040 [Cucumis sativus])

HSP 1 Score: 116.3 bits (290), Expect = 7.3e-23
Identity = 77/140 (55.00%), Postives = 79/140 (56.43%), Query Frame = 0


Query: 1   MKLFGFSVTASDQAT-----MGAPCANLNKDDKRFECQFCGREFANSQALGGHQNAHKRE 60
           MKLFGFSVTAS  +T     +GAPC N N   KRFECQFCGREFANSQALGGHQNAHKRE
Sbjct: 2   MKLFGFSVTASTTSTDGATNLGAPCPNHN---KRFECQFCGREFANSQALGGHQNAHKRE 61

Query: 61  RQLAKQ-LRFDPNKH---------PRFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVNG 120
           RQLAKQ L   P KH         P                                VN 
Sbjct: 62  RQLAKQLLPLQPTKHSRNFLASTPPSSTVGIWSAGRAPPPKYGIQVQARPAVVGGGEVNR 121

Query: 121 E-NGVDLHLSLAPSS-RIFC 124
           E NGVDLHLSLAPSS RIFC
Sbjct: 122 ESNGVDLHLSLAPSSGRIFC 138

[Close]

BLAST of Carg18870 vs. TAIR10
Match: AT1G67030.1 (zinc finger protein 6)

HSP 1 Score: 65.1 bits (157), Expect = 3.5e-11
Identity = 31/65 (47.69%), Postives = 44/65 (67.69%), Query Frame = 0


Query: 1  MKLFGFSV----TASDQATMGAPCANLNKDDKRFECQFCGREFANSQALGGHQNAHKRER 60
          +KLFG ++    +  +Q++            +++ECQ+C REFANSQALGGHQNAHK+ER
Sbjct: 8  LKLFGINLLETTSVQNQSSXXXXXXXXXXXXRKYECQYCCREFANSQALGGHQNAHKKER 67

Query: 61 QLAKQ 62
          QL K+
Sbjct: 68 QLLKR 72

[Close]

BLAST of Carg18870 vs. TAIR10
Match: AT1G10480.1 (zinc finger protein 5)

HSP 1 Score: 64.3 bits (155), Expect = 6.0e-11
Identity = 34/76 (44.74%), Postives = 47/76 (61.84%), Query Frame = 0


Query: 1  MKLFGFSVTASDQ----ATMGAPCANLNKDD----KRFECQFCGREFANSQALGGHQNAH 60
          +KLFGF + +  +     T  +  ++ N       KR ECQ+CG+EFANSQALGGHQNAH
Sbjct: 23 IKLFGFELISGSRTPEITTAESVSSSTNTTSLTVMKRHECQYCGKEFANSQALGGHQNAH 82

Query: 61 KRERQLAKQLRFDPNK 69
          K+ER   K+L+    +
Sbjct: 83 KKERLKKKRLQLQARR 98

[Close]

BLAST of Carg18870 vs. TAIR10
Match: AT5G06650.1 (C2H2 and C2HC zinc fingers superfamily protein)

HSP 1 Score: 64.3 bits (155), Expect = 6.0e-11
Identity = 36/74 (48.65%), Postives = 43/74 (58.11%), Query Frame = 0


Query: 1  MKLFGFSVTASDQATMGAPCANLN----KDD---KRFECQFCGREFANSQALGGHQNAHK 60
          ++LFGF   AS + +      N N    KDD   KRF+C +C R F  SQALGGHQNAHK
Sbjct: 19 IRLFGFEFGASHEESESKDNYNENNESIKDDNKEKRFKCHYCFRNFPTSQALGGHQNAHK 78

Query: 61 RERQLAKQLRFDPN 68
          RERQ  K+     N
Sbjct: 79 RERQQTKRFNLHSN 92

[Close]

BLAST of Carg18870 vs. TAIR10
Match: AT3G58070.1 (C2H2 and C2HC zinc fingers superfamily protein)

HSP 1 Score: 59.3 bits (142), Expect = 1.9e-09
Identity = 26/35 (74.29%), Postives = 30/35 (85.71%), Query Frame = 0


Query: 27  DKRFECQFCGREFANSQALGGHQNAHKRERQLAKQ 62
           ++RFEC +C R F  SQALGGHQNAHKRERQLAK+
Sbjct: 88  NRRFECHYCFRNFPTSQALGGHQNAHKRERQLAKR 122

[Close]

BLAST of Carg18870 vs. TAIR10
Match: AT1G68360.1 (C2H2 and C2HC zinc fingers superfamily protein)

HSP 1 Score: 57.4 bits (137), Expect = 7.3e-09
Identity = 24/41 (58.54%), Postives = 32/41 (78.05%), Query Frame = 0


Query: 29  RFECQFCGREFANSQALGGHQNAHKRERQLAKQLRFDPNKH 70
           ++ECQ+C REF NSQALGGHQNAHK+ERQ  K+ +    ++
Sbjct: 72  KYECQYCCREFGNSQALGGHQNAHKKERQQLKRAQLQATRN 112

[Close]

BLAST of Carg18870 vs. Swiss-Prot
Match: sp|Q39265|ZFP6_ARATH (Zinc finger protein 6 OS=Arabidopsis thaliana OX=3702 GN=ZFP6 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 6.3e-10
Identity = 31/65 (47.69%), Postives = 44/65 (67.69%), Query Frame = 0


Query: 1  MKLFGFSV----TASDQATMGAPCANLNKDDKRFECQFCGREFANSQALGGHQNAHKRER 60
          +KLFG ++    +  +Q++            +++ECQ+C REFANSQALGGHQNAHK+ER
Sbjct: 8  LKLFGINLLETTSVQNQSSXXXXXXXXXXXXRKYECQYCCREFANSQALGGHQNAHKKER 67

Query: 61 QLAKQ 62
          QL K+
Sbjct: 68 QLLKR 72

[Close]

BLAST of Carg18870 vs. Swiss-Prot
Match: sp|Q9FG05|GIS2_ARATH (Zinc finger protein GIS2 OS=Arabidopsis thaliana OX=3702 GN=GIS2 PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-09
Identity = 36/74 (48.65%), Postives = 43/74 (58.11%), Query Frame = 0


Query: 1  MKLFGFSVTASDQATMGAPCANLN----KDD---KRFECQFCGREFANSQALGGHQNAHK 60
          ++LFGF   AS + +      N N    KDD   KRF+C +C R F  SQALGGHQNAHK
Sbjct: 19 IRLFGFEFGASHEESESKDNYNENNESIKDDNKEKRFKCHYCFRNFPTSQALGGHQNAHK 78

Query: 61 RERQLAKQLRFDPN 68
          RERQ  K+     N
Sbjct: 79 RERQQTKRFNLHSN 92

[Close]

BLAST of Carg18870 vs. Swiss-Prot
Match: sp|Q39264|ZFP5_ARATH (Zinc finger protein 5 OS=Arabidopsis thaliana OX=3702 GN=ZFP5 PE=1 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-09
Identity = 34/76 (44.74%), Postives = 47/76 (61.84%), Query Frame = 0


Query: 1  MKLFGFSVTASDQ----ATMGAPCANLNKDD----KRFECQFCGREFANSQALGGHQNAH 60
          +KLFGF + +  +     T  +  ++ N       KR ECQ+CG+EFANSQALGGHQNAH
Sbjct: 23 IKLFGFELISGSRTPEITTAESVSSSTNTTSLTVMKRHECQYCGKEFANSQALGGHQNAH 82

Query: 61 KRERQLAKQLRFDPNK 69
          K+ER   K+L+    +
Sbjct: 83 KKERLKKKRLQLQARR 98

[Close]

BLAST of Carg18870 vs. Swiss-Prot
Match: sp|Q84WI0|GIS_ARATH (Zinc finger protein GIS OS=Arabidopsis thaliana OX=3702 GN=GIS PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.5e-08
Identity = 26/35 (74.29%), Postives = 30/35 (85.71%), Query Frame = 0


Query: 27  DKRFECQFCGREFANSQALGGHQNAHKRERQLAKQ 62
           ++RFEC +C R F  SQALGGHQNAHKRERQLAK+
Sbjct: 88  NRRFECHYCFRNFPTSQALGGHQNAHKRERQLAKR 122

[Close]

BLAST of Carg18870 vs. Swiss-Prot
Match: sp|Q9C9H1|GIS3_ARATH (Zinc finger protein GIS3 OS=Arabidopsis thaliana OX=3702 GN=GIS3 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.3e-07
Identity = 24/41 (58.54%), Postives = 32/41 (78.05%), Query Frame = 0


Query: 29  RFECQFCGREFANSQALGGHQNAHKRERQLAKQLRFDPNKH 70
           ++ECQ+C REF NSQALGGHQNAHK+ERQ  K+ +    ++
Sbjct: 72  KYECQYCCREFGNSQALGGHQNAHKKERQQLKRAQLQATRN 112

[Close]

BLAST of Carg18870 vs. TrEMBL
Match: tr|A0A0A0KI02|A0A0A0KI02_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G312040 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.8e-23
Identity = 77/140 (55.00%), Postives = 79/140 (56.43%), Query Frame = 0


Query: 1   MKLFGFSVTASDQAT-----MGAPCANLNKDDKRFECQFCGREFANSQALGGHQNAHKRE 60
           MKLFGFSVTAS  +T     +GAPC N N   KRFECQFCGREFANSQALGGHQNAHKRE
Sbjct: 2   MKLFGFSVTASTTSTDGATNLGAPCPNHN---KRFECQFCGREFANSQALGGHQNAHKRE 61

Query: 61  RQLAKQ-LRFDPNKH---------PRFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVNG 120
           RQLAKQ L   P KH         P                                VN 
Sbjct: 62  RQLAKQLLPLQPTKHSRNFLASTPPSSTVGIWSAGRAPPPKYGIQVQARPAVVGGGEVNR 121

Query: 121 E-NGVDLHLSLAPSS-RIFC 124
           E NGVDLHLSLAPSS RIFC
Sbjct: 122 ESNGVDLHLSLAPSSGRIFC 138

[Close]

BLAST of Carg18870 vs. TrEMBL
Match: tr|A0A1S3C7Q6|A0A1S3C7Q6_CUCME (zinc finger protein 6-like OS=Cucumis melo OX=3656 GN=LOC103497808 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.5e-21
Identity = 73/134 (54.48%), Postives = 74/134 (55.22%), Query Frame = 0


Query: 1   MKLFGFSVTASDQAT-----MGAPCANLNKDDKRFECQFCGREFANSQALGGHQNAHKRE 60
           MKLFGFSVTAS   T     +GAPC N    DKRFECQFCGREFANSQALGGHQNAHKRE
Sbjct: 2   MKLFGFSVTASTTTTEGAIKLGAPCPN---HDKRFECQFCGREFANSQALGGHQNAHKRE 61

Query: 61  RQLAKQ-LRFDPNKHPR--FXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVNG------- 120
           RQLAKQ L   P KH R  F                              V G       
Sbjct: 62  RQLAKQLLPLHPTKHSRNFFTSTPPSTIGIWSAGRAPPPKDGIQVQARPAVVGGGDVSRE 121

[Close]

BLAST of Carg18870 vs. TrEMBL
Match: tr|A0A2R6PW27|A0A2R6PW27_ACTCH (Zinc finger protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc24566 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.8e-15
Identity = 44/72 (61.11%), Postives = 52/72 (72.22%), Query Frame = 0


Query: 1  MKLFGFSVTASDQATMGAPCANLNKDDKRFECQFCGREFANSQALGGHQNAHKRERQLAK 60
          MKLFGF VTA D++ +  P    + D KRFECQ+C + FANSQALGGHQNAHK+ERQ AK
Sbjct: 1  MKLFGFPVTACDESLVTEP---QDGDSKRFECQYCNKGFANSQALGGHQNAHKKERQRAK 60

Query: 61 QLRFDPNKHPRF 73
             FD + H RF
Sbjct: 61 MAHFDSHHHQRF 69

[Close]

BLAST of Carg18870 vs. TrEMBL
Match: tr|A0A200R283|A0A200R283_9MAGN (Zinc finger protein OS=Macleaya cordata OX=56857 GN=BVC80_1543g299 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 9.1e-14
Identity = 40/64 (62.50%), Postives = 51/64 (79.69%), Query Frame = 0


Query: 1  MKLFGFSVTASDQATMGAPCANLNKDDKRFECQFCGREFANSQALGGHQNAHKRERQLAK 60
          +KLFGFSVT  D+     P  + N+D+++FECQ+C REFANSQALGGHQNAHK+ERQ AK
Sbjct: 27 LKLFGFSVTEHDE----TPVTSENRDNRKFECQYCRREFANSQALGGHQNAHKKERQRAK 86

Query: 61 QLRF 65
          + +F
Sbjct: 87 RAQF 86

[Close]

BLAST of Carg18870 vs. TrEMBL
Match: tr|F6H746|F6H746_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_05s0077g01390 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 9.1e-14
Identity = 42/72 (58.33%), Postives = 54/72 (75.00%), Query Frame = 0


Query: 1   MKLFGFSVTASDQATMGAPCANLNKDDKRFECQFCGREFANSQALGGHQNAHKRERQLAK 60
           MKLFGF VT +D+A +     + + D ++FECQ+C REFANSQALGGHQNAHK+ERQ AK
Sbjct: 37  MKLFGFPVTEADEAPL---TPSNDADIRKFECQYCRREFANSQALGGHQNAHKKERQRAK 96

Query: 61  QLRFDPNKHPRF 73
           + +F  + H RF
Sbjct: 97  RAQFQTDHHRRF 105

The following BLAST results are available for this feature:

BLAST of Carg18870 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023514440.1	7.5e-44	100.00	zinc finger protein 6-like [Cucurbita pepo subsp. pepo]	[more]
XP_022930487.1	1.4e-42	98.37	zinc finger protein 6-like [Cucurbita moschata] >XP_023000211.1 zinc finger prot...	[more]
XP_022138610.1	4.1e-26	55.30	zinc finger protein 5-like [Momordica charantia]	[more]
XP_004150094.1	7.3e-23	55.00	PREDICTED: zinc finger protein 6-like [Cucumis sativus]	[more]
KGN47401.1	7.3e-23	55.00	hypothetical protein Csa_6G312040 [Cucumis sativus]	[more]

BLAST of Carg18870 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G67030.1	3.5e-11	47.69	zinc finger protein 6	[more]
AT1G10480.1	6.0e-11	44.74	zinc finger protein 5	[more]
AT5G06650.1	6.0e-11	48.65	C2H2 and C2HC zinc fingers superfamily protein	[more]
AT3G58070.1	1.9e-09	74.29	C2H2 and C2HC zinc fingers superfamily protein	[more]
AT1G68360.1	7.3e-09	58.54	C2H2 and C2HC zinc fingers superfamily protein	[more]

BLAST of Carg18870 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q39265\|ZFP6_ARATH	6.3e-10	47.69	Zinc finger protein 6 OS=Arabidopsis thaliana OX=3702 GN=ZFP6 PE=2 SV=1	[more]
sp\|Q9FG05\|GIS2_ARATH	1.1e-09	48.65	Zinc finger protein GIS2 OS=Arabidopsis thaliana OX=3702 GN=GIS2 PE=2 SV=1	[more]
sp\|Q39264\|ZFP5_ARATH	1.1e-09	44.74	Zinc finger protein 5 OS=Arabidopsis thaliana OX=3702 GN=ZFP5 PE=1 SV=1	[more]
sp\|Q84WI0\|GIS_ARATH	3.5e-08	74.29	Zinc finger protein GIS OS=Arabidopsis thaliana OX=3702 GN=GIS PE=1 SV=1	[more]
sp\|Q9C9H1\|GIS3_ARATH	1.3e-07	58.54	Zinc finger protein GIS3 OS=Arabidopsis thaliana OX=3702 GN=GIS3 PE=1 SV=1	[more]

BLAST of Carg18870 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KI02\|A0A0A0KI02_CUCSA	4.8e-23	55.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G312040 PE=4 SV=1	[more]
tr\|A0A1S3C7Q6\|A0A1S3C7Q6_CUCME	1.5e-21	54.48	zinc finger protein 6-like OS=Cucumis melo OX=3656 GN=LOC103497808 PE=4 SV=1	[more]
tr\|A0A2R6PW27\|A0A2R6PW27_ACTCH	4.8e-15	61.11	Zinc finger protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Ac...	[more]
tr\|A0A200R283\|A0A200R283_9MAGN	9.1e-14	62.50	Zinc finger protein OS=Macleaya cordata OX=56857 GN=BVC80_1543g299 PE=4 SV=1	[more]
tr\|F6H746\|F6H746_VITVI	9.1e-14	58.33	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_05s0077g01390 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036236	Znf_C2H2_sf
IPR013087	Znf_C2H2_type

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18870-RA	Carg18870-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.30.160.60		coord: 14..72 e-value: 5.8E-7 score: 31.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..105
None	No IPR available	PANTHER	PTHR26374:SF316	ZINC FINGER PROTEIN 8-RELATED	coord: 2..90
None	No IPR available	PANTHER	PTHR26374	FAMILY NOT NAMED	coord: 2..90
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 32..52
IPR013087	Zinc finger C2H2-type	PROSITE	PS50157	ZINC_FINGER_C2H2_2	coord: 30..57 score: 12.528
IPR036236	Zinc finger C2H2 superfamily	SUPERFAMILY	SSF57667	beta-beta-alpha zinc fingers	coord: 26..58

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg18870	Cla009266	Watermelon (97103) v1	carwmB0701
Carg18870	Csa6G312040	Cucumber (Chinese Long) v2	carcuB0724
Carg18870	MELO3C021287	Melon (DHL92) v3.5.1	carmeB0700
Carg18870	ClCG06G004780	Watermelon (Charleston Gray)	carwcgB0681
Carg18870	CSPI06G17200	Wild cucumber (PI 183967)	carcpiB0739
Carg18870	Cucsa.069470	Cucumber (Gy14) v1	carcgyB0785
Carg18870	CmaCh08G012570	Cucurbita maxima (Rimu)	carcmaB0988
Carg18870	CmaCh17G003540	Cucurbita maxima (Rimu)	carcmaB0985
Carg18870	CmoCh08G012270	Cucurbita moschata (Rifu)	carcmoB0960
Carg18870	CmoCh17G003430	Cucurbita moschata (Rifu)	carcmoB0958
Carg18870	Lsi09G014690	Bottle gourd (USVL1VR-Ls)	carlsiB641
Carg18870	Cp4.1LG12g03060	Cucurbita pepo (Zucchini)	carcpeB0984
Carg18870	Cp4.1LG17g00450	Cucurbita pepo (Zucchini)	carcpeB0985
Carg18870	CsGy6G016690	Cucumber (Gy14) v2	carcgybB0701
Carg18870	MELO3C021287.2	Melon (DHL92) v3.6.1	carmedB0713
Carg18870	CsaV3_6G022570	Cucumber (Chinese Long) v3	carcucB0742
Carg18870	Cla97C06G114240	Watermelon (97103) v2	carwmbB0735
Carg18870	Bhi12G001700	Wax gourd	carwgoB0826

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg18870	Carg05531	Silver-seed gourd	carcarB085

The following block(s) are covering this gene:


Gene	Organism	Block
Carg18870	Silver-seed gourd	carcarB316
Carg18870	Cucumber (Gy14) v2	carcgybB0700
Carg18870	Cucumber (Gy14) v1	carcgyB0788
Carg18870	Cucurbita maxima (Rimu)	carcmaB0984
Carg18870	Cucurbita maxima (Rimu)	carcmaB0987
Carg18870	Cucurbita moschata (Rifu)	carcmoB0957
Carg18870	Cucurbita pepo (Zucchini)	carcpeB0986
Carg18870	Cucurbita pepo (Zucchini)	carcpeB0987
Carg18870	Wild cucumber (PI 183967)	carcpiB0738
Carg18870	Cucumber (Chinese Long) v2	carcuB0723
Carg18870	Cucumber (Chinese Long) v3	carcucB0741
Carg18870	Bottle gourd (USVL1VR-Ls)	carlsiB642
Carg18870	Melon (DHL92) v3.5.1	carmeB0701
Carg18870	Melon (DHL92) v3.6.1	carmedB0714
Carg18870	Watermelon (Charleston Gray)	carwcgB0680
Carg18870	Watermelon (97103) v1	carwmB0700
Carg18870	Watermelon (97103) v2	carwmbB0733
Carg18870	Watermelon (97103) v2	carwmbB0734
Carg18870	Wax gourd	carwgoB0828