Cp4.1LG08g05130 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG08g05130
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionDNA-directed RNA polymerase subunit
LocationCp4.1LG08 : 1018527 .. 1022326 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCATTTACAAGAACTGTAAGCAGTCAAAGTTCACTTTCTCCCGCCAATGGAAGAAAACTCTTCTCTTTCGCCTGATCGACGTTTCTAGAACCGCAGCCGATTACGGATAGATGCGCTAGCTGAGCATTCCAGTGATTCCACTCCTCAAATTCTTTCTTTCTGTTGAATATAGCGTTTGATTTTTGCGCAGATTCCTTCTGATTTTCAGCTGAACAGCTGCTAAAACCCTAGCTGAAAGTTGATCTGTATTAGTTCAGGGTTTCTTGTTTTTCCATCTTCTGCAAGATGAGTACCATGAAGTTTTGCCGGGAATGGTATGTGTTAGAGTTTAATGTCGCATATGACTCTTGTTCTTCTGCGTTGATTAGTTTAAGTTGTTGAAAAATGTTGAGAATATGGAAATTCTTATTTTGCAGTAACAACATTCTCTATCCGAAGGAGGATAGGGATGAGAAGATTCTTCTCTATGCGTGTCGCAACTGTGATCACCAGGTAACCTTCTCCTTCTTTTCATTTCAACTTTCTATTCTAACTTCGTGAACGTTTTAGGTTTATTAGTTAGTCTTTCATTTCTAATGTAATAGTTTACGACTTACGAGTACGATGTTCTCTCTATATATTTGTCGGGTCTCTGGTGAAACCTTTAGCTATCGTTTTGTAGTTCAAATCAAATATCATTCTGCTTCTGGATGTGAGTTGCCCTACTTTATAGTAATTTTAACCTAGGACAACGATATTTGGTTCTGATTCGTGATTATGCCTTCAGATACTCAAGGTTGTCACTTTCACTCGTCACCCTGTTAAGTGTTCCTGTCGTCTTATCATCTCTGTTGTTAGCTTACCCTTCTCTGAATTTGAAGGACATACTATCCCATTGTTCTTGGTTGCTTTTGTAGTTCATTTCGGTATAATAGTTTTCAGGAAGGAACAATGTAAGAAGATTATGATTTAACTAATTCTCATCTTTTGATGACATGTCAACGGGTCCATTACAGTTCTTAGTTGGAGATATGCATGTACATCAGTATAAATATAGATCTAGACAAATGCTAGAAACAGCTACTCGTTTCATTTAATCTAGGTGAGGGAATATAACTTCTGTGCTGACGGTTAATTCAGCCTTTATAAAATTATTAGGATAGTATTACTAATTTAATTCTGAACGATGCAAGTTTGGGCCATTCTTTAGTTGATATTAGTGTTAACTCACTCCCTTAGGTCGTGGAATCGTTAAAGTTAATCTTCACGGATGGCTTTTGATTTCCTGGTTCTTTTGAATTTATTTGGGTTCTGAAATTCTTTACTAATTGAGTTGCATATTTTCTCTACCTCTAGTCAATGTATGTTTTCCTGATGGATCGTTGTTGGAAACTTCCTTTCTATTTTCTTGTAGCCGAGTAGCTTTTATTTTTGCCTACTGGAAGATAGACCTGTATCTGTACACTGAAATCAATATCCTCCCTTCTTTTCTTCTGATTCGACTTACTGATACTCCCTTCCATGTATTGACATGTTTTAATTTCTAGGACTTGATGGTTTCCTTCCCCCTTATTCTGACCATTAATTCTCATGTTTTGTTTTAAATTTCTGTTTGCAGGAAGTTGCTGACAATAACTGTGTCTATAGGAATGAGATTCATCACGCCGTAGGGGAACGCACTCAAGTTCTGCAAGATGTTGCTGCGGATCCAACACTCCCTCGCACAAAAGCTGTCCGATGTGCTCAATGCAACCATGGAGAAGCTGTTTTCTTCCAGGTTCACTTCCTTTTTATTTCCTAACTCTGTGTTGCTAGGCTTGAGCTTTCTTCTTCCCTCTCTTGATTTCATCAGTGTTACATTTTCCAACCCAAGCTTCATTCGTTCTTAACTCCCAAAAGTTGTAGTTTGTTCTAAATTACATGCCACATCATTATCTTAATTGGGCTGTGAATACCGCCGGTAAGGTTTTCTTGAATGAAATGTGAACAGTCTTCTTTTGTTGGATTTTTGTAGGCTGCTAGAGGTTACCAATTTTGATTTGCATCATTTCATCATGTTCATACTTATATCTAGCCATGATCTCATTGCATAATTTTATGCAGGCCACTGCCAGAGGGGAGGAAGGTATGACATTATTCTTCGTTTGCTGCAATCCAAATTGTGGCCACAGGTGGAGAGATTGATGTCAAATATGTGCTGAACATATGTTTACTTCATTGACTCTTGGTATGTCATCAAGTGTTTTAACAATCTTATGCTTAAAGACGTCTTTTTTGGCATGGGGTGTACAATTGTACTGATTGTCAATGTGGGTTGATGAGGACCACGAACTTCAACTAAGTCTTATTTTATAGATCTTAATTTTTATGAAGATTTCATCATTACCATAAAGTTTTGATATTTATTGAACCCTTTGTCTATGGACATACTAAAAGAATATTGAACAAAAAGATTGGTCTAAATTTGTAGGCATCAACCACCGGAGCAATTGGGAGTGCTGAATACTGATTTTTCATTTGTTATTGCTGTGGATGTGAAAGATAAAGAGTATTGTATACACAAATGAATCCGGGTGAAAGATGCTTTCCCTCTCTAATTTCCTAAAGGATTTGAATGAAAGGCATTGATTTGATCAAATAGGGAAAAAGAATTATCTACAATCAAGATAAATAGCCAAAGTGAGCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTTCTTCAACCTAACATTGGCCAATAATTTCTACCAAAATTCTTAGAATGCTAAGAGGCGTATTGTACAAGAATCTACAAAGGTGATACGTTGCGACTAAACCAGTCCGACAATCGTCTAATTTTCTTCGACATGTCTTCATTCTTTGCCACGAATGACTCGAAATTTGATAGCATTACCATGAAGTCGTGCTTCAATGCTTCCAAGCTTCGGTAGTAATCATTCTGTAATCTTTCCTGGATTATCTCAAGGCACAATGGTACAGGAAACCTATACATACATGTACAAAAGGCCAAAATTACATTCGAATACCGTATATACGGGTCTAGGGAGTTAAGTTTCTCGGAAGATGGATCAAGAAATTGATAGCAAATGGATTCATGAAAGTACCTGTTCTTGTATTGTGTCTTTCGTGCGAGAAGCATCAAATCTTGAATCCCGTAACGACCCTGAGATTTGAAGGACAACATCAGGTTATACCCATTCAAAAGGATATAAACAGAAAACATAATAACCTTGAAGAAGCAGACTACCTGCATAGAAGTCGACGTTAATTGGTCGAAGGCAGTTAACAACTTCGCTTTGTTTTCGTCGTCTATTCGAGGCTGATCCCACTGAGTAACAGTATCATACAGCTCCCAAGGACTATGTAAATGTGGTTCTGCAGGATCACTCCTATACTTAATTGTGTACCTCTCCCAAGGACTTTCTGGATACTCCAAAGATTTTGCCTGCACGGAGACAATCCGACCATCCCACCAACTACCATCTACTCCGACGTCGTTTTTCCACCACACTTTGCACTTATCCCTGAATGTCCAATTCCTCTGCATTGCCGCTTCAAACCGAGTTCTTTCGACTAAGAAGTCGGGGAAACTAGTCAACTCGGGCAGAGTTAACTTCAAAGATTGGAGGTATACATGGGAAGTAGGATCTATGAACTTGAGTAGCATTTTACAGCAACTATCTCCAGAACCTGCAGAAGTAGAATAAACAAGCTCGACAACCTTACAGAACTCAACCGCTCGTACAGGTCCCCGGATTGAGGTCCAAGGTCCGGTGTCTTTTGTGTGATAGTAATTTGTACAACAGTGATCTATGTAT

mRNA sequence

CCATTTACAAGAACTGTAAGCAGTCAAAGTTCACTTTCTCCCGCCAATGGAAGAAAACTCTTCTCTTTCGCCTGATCGACGTTTCTAGAACCGCAGCCGATTACGGATAGATGCGCTAGCTGAGCATTCCAGTGATTCCACTCCTCAAATTCTTTCTTTCTGTTGAATATAGCGTTTGATTTTTGCGCAGATTCCTTCTGATTTTCAGCTGAACAGCTGCTAAAACCCTAGCTGAAAGTTGATCTGTATTAGTTCAGGGTTTCTTGTTTTTCCATCTTCTGCAAGATGAGTACCATGAAGTTTTGCCGGGAATGTAACAACATTCTCTATCCGAAGGAGGATAGGGATGAGAAGATTCTTCTCTATGCGTGTCGCAACTGTGATCACCAGATACTCAAGGTTGTCACTTTCACTCGTCACCCTGTTAAGTGTTCCTGTCGTCTTATCATCTCTGTTGTTAGCTTACCCTTCTCTGAATTTGAAGGACATACTATCCCATTGTTCTTGGTTGCTTTTGTAGTTCATTTCGGTATAATAGTTTTCAGGAAGGAACAATTCAATGTATGTTTTCCTGATGGATCGTTGTTGGAAACTTCCTTTCTATTTTCTTGTAGCCGAGTAGCTTTTATTTTTGCCTACTGGAAGATAGACCTGTATCTGTACACTGAAATCAATATCCTCCCTTCTTTTCTTCTGATTCGACTTACTGATACTCCCTTCCATGAAGTTGCTGACAATAACTGTGTCTATAGGAATGAGATTCATCACGCCGTAGGGGAACGCACTCAAGTTCTGCAAGATGTTGCTGCGGATCCAACACTCCCTCGCACAAAAGCTGTCCGATGTGCTCAATGCAACCATGGAGAAGCTGTTTTCTTCCAGGCCACTGCCAGAGGGGAGGAAGGTATGACATTATTCTTCGTTTGCTGCAATCCAAATTGTGGCCACAGGTGGAGAGATTGATGTCAAATATGTGCTGAACATATGTTTACTTCATTGACTCTTGGTATGTCATCAAGTGTTTTAACAATCTTATGCTTAAAGACGTCTTTTTTGGCATGGGGTGTACAATTGTACTGATTGTCAATGTGGGTTGATGAGGACCACGAACTTCAACTAAGTCTTATTTTATAGATCTTAATTTTTATGAAGATTTCATCATTACCATAAAGTTTTGATATTTATTGAACCCTTTGTCTATGGACATACTAAAAGAATATTGAACAAAAAGATTGGTCTAAATTTGTAGGCATCAACCACCGGAGCAATTGGGAGTGCTGAATACTGATTTTTCATTTGTTATTGCTGTGGATGTGAAAGATAAAGAGTATTGTATACACAAATGAATCCGGGTGAAAGATGCTTTCCCTCTCTAATTTCCTAAAGGATTTGAATGAAAGGCATTGATTTGATCAAATAGGGAAAAAGAATTATCTACAATCAAGATAAATAGCCAAAGTGAGCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTTCTTCAACCTAACATTGGCCAATAATTTCTACCAAAATTCTTAGAATGCTAAGAGGCGTATTGTACAAGAATCTACAAAGGTGATACGTTGCGACTAAACCAGTCCGACAATCGTCTAATTTTCTTCGACATGTCTTCATTCTTTGCCACGAATGACTCGAAATTTGATAGCATTACCATGAAGTCGTGCTTCAATGCTTCCAAGCTTCGGTAGTAATCATTCTGTAATCTTTCCTGGATTATCTCAAGGCACAATGGTACAGGAAACCTATACATACATGTACAAAAGGCCAAAATTACATTCGAATACCGTATATACGGGTCTAGGGAGTTAAGTTTCTCGGAAGATGGATCAAGAAATTGATAGCAAATGGATTCATGAAAGTACCTGTTCTTGTATTGTGTCTTTCGTGCGAGAAGCATCAAATCTTGAATCCCGTAACGACCCTGAGATTTGAAGGACAACATCAGGTTATACCCATTCAAAAGGATATAAACAGAAAACATAATAACCTTGAAGAAGCAGACTACCTGCATAGAAGTCGACGTTAATTGGTCGAAGGCAGTTAACAACTTCGCTTTGTTTTCGTCGTCTATTCGAGGCTGATCCCACTGAGTAACAGTATCATACAGCTCCCAAGGACTATGTAAATGTGGTTCTGCAGGATCACTCCTATACTTAATTGTGTACCTCTCCCAAGGACTTTCTGGATACTCCAAAGATTTTGCCTGCACGGAGACAATCCGACCATCCCACCAACTACCATCTACTCCGACGTCGTTTTTCCACCACACTTTGCACTTATCCCTGAATGTCCAATTCCTCTGCATTGCCGCTTCAAACCGAGTTCTTTCGACTAAGAAGTCGGGGAAACTAGTCAACTCGGGCAGAGTTAACTTCAAAGATTGGAGGTATACATGGGAAGTAGGATCTATGAACTTGAGTAGCATTTTACAGCAACTATCTCCAGAACCTGCAGAAGTAGAATAAACAAGCTCGACAACCTTACAGAACTCAACCGCTCGTACAGGTCCCCGGATTGAGGTCCAAGGTCCGGTGTCTTTTGTGTGATAGTAATTTGTACAACAGTGATCTATGTAT

Coding sequence (CDS)

ATGAGTACCATGAAGTTTTGCCGGGAATGTAACAACATTCTCTATCCGAAGGAGGATAGGGATGAGAAGATTCTTCTCTATGCGTGTCGCAACTGTGATCACCAGATACTCAAGGTTGTCACTTTCACTCGTCACCCTGTTAAGTGTTCCTGTCGTCTTATCATCTCTGTTGTTAGCTTACCCTTCTCTGAATTTGAAGGACATACTATCCCATTGTTCTTGGTTGCTTTTGTAGTTCATTTCGGTATAATAGTTTTCAGGAAGGAACAATTCAATGTATGTTTTCCTGATGGATCGTTGTTGGAAACTTCCTTTCTATTTTCTTGTAGCCGAGTAGCTTTTATTTTTGCCTACTGGAAGATAGACCTGTATCTGTACACTGAAATCAATATCCTCCCTTCTTTTCTTCTGATTCGACTTACTGATACTCCCTTCCATGAAGTTGCTGACAATAACTGTGTCTATAGGAATGAGATTCATCACGCCGTAGGGGAACGCACTCAAGTTCTGCAAGATGTTGCTGCGGATCCAACACTCCCTCGCACAAAAGCTGTCCGATGTGCTCAATGCAACCATGGAGAAGCTGTTTTCTTCCAGGCCACTGCCAGAGGGGAGGAAGGTATGACATTATTCTTCGTTTGCTGCAATCCAAATTGTGGCCACAGGTGGAGAGATTGA

Protein sequence

MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQILKVVTFTRHPVKCSCRLIISVVSLPFSEFEGHTIPLFLVAFVVHFGIIVFRKEQFNVCFPDGSLLETSFLFSCSRVAFIFAYWKIDLYLYTEINILPSFLLIRLTDTPFHEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD
Homology
[Close]
BLAST of Cp4.1LG08g05130 vs. Swiss-Prot
Match: RPB9B_ARATH (DNA-directed RNA polymerases II, IV and V subunit 9B OS=Arabidopsis thaliana GN=NRPB9B PE=1 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 8.9e-39
Identity = 72/101 (71.29%), Postives = 82/101 (81.19%), Query Frame = 1 

Query: 125 LYTEINILPSFLLIRLTDTPFHEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKA 184
           LY + +   S LL    +    E ADNNCVYRNE+HH+V E+TQ+L DVA+DPTLPRTKA
Sbjct: 14  LYPKEDKEQSILLYACRNCDHQEAADNNCVYRNEVHHSVSEQTQILSDVASDPTLPRTKA 73

Query: 185 VRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 226
           VRCA+C HGEAVFFQATARGEEGMTLFFVCCNPNC HRWR+
Sbjct: 74  VRCAKCQHGEAVFFQATARGEEGMTLFFVCCNPNCSHRWRE 114

[Close]
BLAST of Cp4.1LG08g05130 vs. Swiss-Prot
Match: RPB9A_ARATH (DNA-directed RNA polymerases II, IV and V subunit 9A OS=Arabidopsis thaliana GN=NRPB9A PE=1 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 5.8e-38
Identity = 71/101 (70.30%), Postives = 82/101 (81.19%), Query Frame = 1 

Query: 125 LYTEINILPSFLLIRLTDTPFHEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKA 184
           LY + +     LL    +    EVADN+CVYRNE+HH+V ERTQ+L DVA+DPTLPRTKA
Sbjct: 14  LYPKEDKEQKILLYACRNCDHQEVADNSCVYRNEVHHSVSERTQILTDVASDPTLPRTKA 73

Query: 185 VRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 226
           VRC++C H EAVFFQATARGEEGMTLFFVCCNPNCGHRWR+
Sbjct: 74  VRCSKCQHREAVFFQATARGEEGMTLFFVCCNPNCGHRWRE 114

[Close]
BLAST of Cp4.1LG08g05130 vs. Swiss-Prot
Match: RPB9_BOVIN (DNA-directed RNA polymerase II subunit RPB9 OS=Bos taurus GN=POLR2I PE=1 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 3.8e-21
Identity = 45/91 (49.45%), Postives = 63/91 (69.23%), Query Frame = 1 

Query: 136 LLIRLTDTPFHEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEA 195
           LL    +  + + ADN+C+Y N+I H V E TQ++ DV+ DPTLPRT+   C +C H EA
Sbjct: 35  LLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIADVSQDPTLPRTEDHPCQKCGHKEA 94

Query: 196 VFFQA-TARGEEGMTLFFVCCNPNCGHRWRD 226
           VFFQ+ +AR E+ M L++VC  P+CGHRW +
Sbjct: 95  VFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125

[Close]
BLAST of Cp4.1LG08g05130 vs. Swiss-Prot
Match: RPB9_HUMAN (DNA-directed RNA polymerase II subunit RPB9 OS=Homo sapiens GN=POLR2I PE=1 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 3.8e-21
Identity = 45/91 (49.45%), Postives = 63/91 (69.23%), Query Frame = 1 

Query: 136 LLIRLTDTPFHEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEA 195
           LL    +  + + ADN+C+Y N+I H V E TQ++ DV+ DPTLPRT+   C +C H EA
Sbjct: 35  LLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIADVSQDPTLPRTEDHPCQKCGHKEA 94

Query: 196 VFFQA-TARGEEGMTLFFVCCNPNCGHRWRD 226
           VFFQ+ +AR E+ M L++VC  P+CGHRW +
Sbjct: 95  VFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125

[Close]
BLAST of Cp4.1LG08g05130 vs. Swiss-Prot
Match: RPB9_MOUSE (DNA-directed RNA polymerase II subunit RPB9 OS=Mus musculus GN=Polr2i PE=1 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 3.8e-21
Identity = 45/91 (49.45%), Postives = 63/91 (69.23%), Query Frame = 1 

Query: 136 LLIRLTDTPFHEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEA 195
           LL    +  + + ADN+C+Y N+I H V E TQ++ DV+ DPTLPRT+   C +C H EA
Sbjct: 35  LLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIADVSQDPTLPRTEDHPCQKCGHKEA 94

Query: 196 VFFQA-TARGEEGMTLFFVCCNPNCGHRWRD 226
           VFFQ+ +AR E+ M L++VC  P+CGHRW +
Sbjct: 95  VFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125

[Close]
BLAST of Cp4.1LG08g05130 vs. TrEMBL
Match: A0A067JYM8_JATCU (DNA-directed RNA polymerase subunit OS=Jatropha curcas GN=JCGZ_18978 PE=3 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 2.4e-51
Identity = 125/257 (48.64%), Postives = 148/257 (57.59%), Query Frame = 1 

Query: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQIL-------------KVVTFTR--- 60
           MS  KFC +CNNILYPKED+ ++ILLYACRNCDHQ +              V  FT+   
Sbjct: 1   MSVYKFCPDCNNILYPKEDKKQRILLYACRNCDHQEVADNNRVYRNEVQHSVTEFTQILQ 60

Query: 61  -----------HPVKCS-CRLIISVVSLPFSEFEGHTIPLFLVAFVVHFGIIVFRKE--- 120
                        V+CS C    +V     S  EG T  LF V    + G  V R +   
Sbjct: 61  DVASDPTLPRTKSVRCSACGHGEAVFLQATSREEGFT--LFYVCCNPNCGNRVARSKNPA 120

Query: 121 -QFNVCFPDGSLLETSFLFSCSRVAFIFAYWKIDLYLYTEINILPSFLLIRLTDTPFHEV 180
            Q N   P   L  + F FS  +++ +    + +  LY + +     LL    +    E 
Sbjct: 121 RQKNPLSPTLLLASSGFFFSNRKMSTMKFCRECNNILYPKEDRDHKVLLFACRNCEHQEA 180

Query: 181 ADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGM 226
           ADNNCVYRNE+HH+V ERTQVLQDVAADPTLPRTKAV C  C H EAVFFQATARGEEGM
Sbjct: 181 ADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATARGEEGM 240

[Close]
BLAST of Cp4.1LG08g05130 vs. TrEMBL
Match: A0A0A0L816_CUCSA (DNA-directed RNA polymerase subunit OS=Cucumis sativus GN=Csa_3G166240 PE=3 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 1.3e-41
Identity = 83/101 (82.18%), Postives = 86/101 (85.15%), Query Frame = 1 

Query: 125 LYTEINILPSFLLIRLTDTPFHEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKA 184
           LY + +     LL    +    EVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKA
Sbjct: 14  LYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKA 73

Query: 185 VRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 226
           VRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD
Sbjct: 74  VRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 114

[Close]
BLAST of Cp4.1LG08g05130 vs. TrEMBL
Match: W9QW59_9ROSA (DNA-directed RNA polymerase subunit OS=Morus notabilis GN=L484_007725 PE=3 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 6.6e-41
Identity = 81/101 (80.20%), Postives = 86/101 (85.15%), Query Frame = 1 

Query: 125 LYTEINILPSFLLIRLTDTPFHEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKA 184
           LY + +     LL    +    EVADNNCVYRNEIHH+VGERTQVLQDVAADPTLPRTK+
Sbjct: 92  LYPKEDRDQKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKS 151

Query: 185 VRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 226
           VRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD
Sbjct: 152 VRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 192

[Close]
BLAST of Cp4.1LG08g05130 vs. TrEMBL
Match: A0A103XBI1_CYNCS (DNA-directed RNA polymerase subunit OS=Cynara cardunculus var. scolymus GN=Ccrd_025042 PE=3 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 6.6e-41
Identity = 82/101 (81.19%), Postives = 85/101 (84.16%), Query Frame = 1 

Query: 125 LYTEINILPSFLLIRLTDTPFHEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKA 184
           LY + +     LL    +    EVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKA
Sbjct: 14  LYPKEDKDQKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKA 73

Query: 185 VRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 226
           VRCAQC HGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD
Sbjct: 74  VRCAQCGHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 114

[Close]
BLAST of Cp4.1LG08g05130 vs. TrEMBL
Match: A0A103XGC5_CYNCS (Zinc finger, TFIIS-type OS=Cynara cardunculus var. scolymus GN=Ccrd_007770 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 2.5e-40
Identity = 77/79 (97.47%), Postives = 77/79 (97.47%), Query Frame = 1 

Query: 147 EVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEE 206
           E ADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQC HGEAVFFQATARGEE
Sbjct: 16  EAADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCGHGEAVFFQATARGEE 75

Query: 207 GMTLFFVCCNPNCGHRWRD 226
           GMTLFFVCCNPNCGHRWRD
Sbjct: 76  GMTLFFVCCNPNCGHRWRD 94

[Close]
BLAST of Cp4.1LG08g05130 vs. TAIR10
Match: AT4G16265.1 (AT4G16265.1 RNA polymerases M/15 Kd subunit)

HSP 1 Score: 161.8 bits (408), Expect = 5.0e-40
Identity = 72/101 (71.29%), Postives = 82/101 (81.19%), Query Frame = 1 

Query: 125 LYTEINILPSFLLIRLTDTPFHEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKA 184
           LY + +   S LL    +    E ADNNCVYRNE+HH+V E+TQ+L DVA+DPTLPRTKA
Sbjct: 14  LYPKEDKEQSILLYACRNCDHQEAADNNCVYRNEVHHSVSEQTQILSDVASDPTLPRTKA 73

Query: 185 VRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 226
           VRCA+C HGEAVFFQATARGEEGMTLFFVCCNPNC HRWR+
Sbjct: 74  VRCAKCQHGEAVFFQATARGEEGMTLFFVCCNPNCSHRWRE 114

[Close]
BLAST of Cp4.1LG08g05130 vs. TAIR10
Match: AT3G16980.1 (AT3G16980.1 RNA polymerases M/15 Kd subunit)

HSP 1 Score: 159.1 bits (401), Expect = 3.3e-39
Identity = 71/101 (70.30%), Postives = 82/101 (81.19%), Query Frame = 1 

Query: 125 LYTEINILPSFLLIRLTDTPFHEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKA 184
           LY + +     LL    +    EVADN+CVYRNE+HH+V ERTQ+L DVA+DPTLPRTKA
Sbjct: 14  LYPKEDKEQKILLYACRNCDHQEVADNSCVYRNEVHHSVSERTQILTDVASDPTLPRTKA 73

Query: 185 VRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 226
           VRC++C H EAVFFQATARGEEGMTLFFVCCNPNCGHRWR+
Sbjct: 74  VRCSKCQHREAVFFQATARGEEGMTLFFVCCNPNCGHRWRE 114

[Close]
BLAST of Cp4.1LG08g05130 vs. NCBI nr
Match: gi|643716125|gb|KDP27898.1| (hypothetical protein JCGZ_18978 [Jatropha curcas])

HSP 1 Score: 210.3 bits (534), Expect = 3.5e-51
Identity = 125/257 (48.64%), Postives = 148/257 (57.59%), Query Frame = 1 

Query: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQIL-------------KVVTFTR--- 60
           MS  KFC +CNNILYPKED+ ++ILLYACRNCDHQ +              V  FT+   
Sbjct: 1   MSVYKFCPDCNNILYPKEDKKQRILLYACRNCDHQEVADNNRVYRNEVQHSVTEFTQILQ 60

Query: 61  -----------HPVKCS-CRLIISVVSLPFSEFEGHTIPLFLVAFVVHFGIIVFRKE--- 120
                        V+CS C    +V     S  EG T  LF V    + G  V R +   
Sbjct: 61  DVASDPTLPRTKSVRCSACGHGEAVFLQATSREEGFT--LFYVCCNPNCGNRVARSKNPA 120

Query: 121 -QFNVCFPDGSLLETSFLFSCSRVAFIFAYWKIDLYLYTEINILPSFLLIRLTDTPFHEV 180
            Q N   P   L  + F FS  +++ +    + +  LY + +     LL    +    E 
Sbjct: 121 RQKNPLSPTLLLASSGFFFSNRKMSTMKFCRECNNILYPKEDRDHKVLLFACRNCEHQEA 180

Query: 181 ADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGM 226
           ADNNCVYRNE+HH+V ERTQVLQDVAADPTLPRTKAV C  C H EAVFFQATARGEEGM
Sbjct: 181 ADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATARGEEGM 240

[Close]
BLAST of Cp4.1LG08g05130 vs. NCBI nr
Match: gi|659076932|ref|XP_008438942.1| (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A [Cucumis melo])

HSP 1 Score: 177.9 bits (450), Expect = 1.9e-41
Identity = 83/101 (82.18%), Postives = 86/101 (85.15%), Query Frame = 1 

Query: 125 LYTEINILPSFLLIRLTDTPFHEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKA 184
           LY + +     LL    +    EVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKA
Sbjct: 14  LYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKA 73

Query: 185 VRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 226
           VRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD
Sbjct: 74  VRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 114

[Close]
BLAST of Cp4.1LG08g05130 vs. NCBI nr
Match: gi|976898897|gb|KVH87674.1| (DNA-directed RNA polymerase, M/15kDa subunit [Cynara cardunculus var. scolymus])

HSP 1 Score: 175.6 bits (444), Expect = 9.5e-41
Identity = 82/101 (81.19%), Postives = 85/101 (84.16%), Query Frame = 1 

Query: 125 LYTEINILPSFLLIRLTDTPFHEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKA 184
           LY + +     LL    +    EVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKA
Sbjct: 14  LYPKEDKDQKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKA 73

Query: 185 VRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 226
           VRCAQC HGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD
Sbjct: 74  VRCAQCGHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 114

[Close]
BLAST of Cp4.1LG08g05130 vs. NCBI nr
Match: gi|703091293|ref|XP_010094310.1| (DNA-directed RNA polymerase II subunit [Morus notabilis])

HSP 1 Score: 175.6 bits (444), Expect = 9.5e-41
Identity = 81/101 (80.20%), Postives = 86/101 (85.15%), Query Frame = 1 

Query: 125 LYTEINILPSFLLIRLTDTPFHEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKA 184
           LY + +     LL    +    EVADNNCVYRNEIHH+VGERTQVLQDVAADPTLPRTK+
Sbjct: 92  LYPKEDRDQKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKS 151

Query: 185 VRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 226
           VRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD
Sbjct: 152 VRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 192

[Close]
BLAST of Cp4.1LG08g05130 vs. NCBI nr
Match: gi|720038529|ref|XP_010268008.1| (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A [Nelumbo nucifera])

HSP 1 Score: 174.9 bits (442), Expect = 1.6e-40
Identity = 80/101 (79.21%), Postives = 86/101 (85.15%), Query Frame = 1 

Query: 125 LYTEINILPSFLLIRLTDTPFHEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKA 184
           LY + +     LL    +    EVADNNCVYRNEIHH+VGERTQVLQDVAADPTLPRTK+
Sbjct: 14  LYPKEDKEQKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKS 73

Query: 185 VRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 226
           VRCAQCNHGEAVFFQAT+RGEEGMTLFFVCCNPNCGHRWRD
Sbjct: 74  VRCAQCNHGEAVFFQATSRGEEGMTLFFVCCNPNCGHRWRD 114

The following BLAST results are available for this feature:
BLAST of Cp4.1LG08g05130 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RPB9B_ARATH8.9e-3971.29DNA-directed RNA polymerases II, IV and V subunit 9B OS=Arabidopsis thaliana GN=... [more]
RPB9A_ARATH5.8e-3870.30DNA-directed RNA polymerases II, IV and V subunit 9A OS=Arabidopsis thaliana GN=... [more]
RPB9_BOVIN3.8e-2149.45DNA-directed RNA polymerase II subunit RPB9 OS=Bos taurus GN=POLR2I PE=1 SV=1[more]
RPB9_HUMAN3.8e-2149.45DNA-directed RNA polymerase II subunit RPB9 OS=Homo sapiens GN=POLR2I PE=1 SV=1[more]
RPB9_MOUSE3.8e-2149.45DNA-directed RNA polymerase II subunit RPB9 OS=Mus musculus GN=Polr2i PE=1 SV=1[more]
BLAST of Cp4.1LG08g05130 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A067JYM8_JATCU2.4e-5148.64DNA-directed RNA polymerase subunit OS=Jatropha curcas GN=JCGZ_18978 PE=3 SV=1[more]
A0A0A0L816_CUCSA1.3e-4182.18DNA-directed RNA polymerase subunit OS=Cucumis sativus GN=Csa_3G166240 PE=3 SV=1[more]
W9QW59_9ROSA6.6e-4180.20DNA-directed RNA polymerase subunit OS=Morus notabilis GN=L484_007725 PE=3 SV=1[more]
A0A103XBI1_CYNCS6.6e-4181.19DNA-directed RNA polymerase subunit OS=Cynara cardunculus var. scolymus GN=Ccrd_... [more]
A0A103XGC5_CYNCS2.5e-4097.47Zinc finger, TFIIS-type OS=Cynara cardunculus var. scolymus GN=Ccrd_007770 PE=4 ... [more]
BLAST of Cp4.1LG08g05130 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G16265.15.0e-4071.29 RNA polymerases M/15 Kd subunit[more]
AT3G16980.13.3e-3970.30 RNA polymerases M/15 Kd subunit[more]
BLAST of Cp4.1LG08g05130 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|643716125|gb|KDP27898.1|3.5e-5148.64hypothetical protein JCGZ_18978 [Jatropha curcas][more]
gi|659076932|ref|XP_008438942.1|1.9e-4182.18PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A [Cucumis melo][more]
gi|976898897|gb|KVH87674.1|9.5e-4181.19DNA-directed RNA polymerase, M/15kDa subunit [Cynara cardunculus var. scolymus][more]
gi|703091293|ref|XP_010094310.1|9.5e-4180.20DNA-directed RNA polymerase II subunit [Morus notabilis][more]
gi|720038529|ref|XP_010268008.1|1.6e-4079.21PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A [Nelumbo nucifer... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR019761DNA-dir_RNA_pol-M_15_CS
IPR001529DNA-dir_RNA_pol_M/15kDasu
IPR001222Znf_TFIIS
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0001193 maintenance of transcriptional fidelity during DNA-templated transcription elongation from RNA polymerase II promoter
biological_process GO:0006379 mRNA cleavage
biological_process GO:0006283 transcription-coupled nucleotide-excision repair
biological_process GO:0006367 transcription initiation from RNA polymerase II promoter
cellular_component GO:0005575 cellular_component
cellular_component GO:0005730 nucleolus
cellular_component GO:0005665 DNA-directed RNA polymerase II, core complex
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed RNA polymerase activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG08g05130.1Cp4.1LG08g05130.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001222Zinc finger, TFIIS-typePFAMPF01096TFIIS_Ccoord: 186..224
score: 2.2
IPR001222Zinc finger, TFIIS-typeSMARTSM00440Cys4_2coord: 185..225
score: 2.
IPR001222Zinc finger, TFIIS-typePROFILEPS51133ZF_TFIIS_2coord: 183..224
score: 1
IPR001529DNA-directed RNA polymerase, M/15kDa subunitPFAMPF02150RNA_POL_M_15KDcoord: 4..33
score: 1.4
IPR001529DNA-directed RNA polymerase, M/15kDa subunitSMARTSM00661rpol9cneucoord: 5..57
score: 1.
IPR019761DNA-directed RNA polymerase M, 15kDa subunit, conserved sitePROSITEPS01030RNA_POL_M_15KDcoord: 6..32
scor
NoneNo IPR availableGENE3DG3DSA:2.20.25.10coord: 1..35
score: 1.1E-19coord: 159..225
score: 1.2
NoneNo IPR availablePANTHERPTHR11239DNA-DIRECTED RNA POLYMERASEcoord: 145..225
score: 1.4E-73coord: 1..40
score: 1.4
NoneNo IPR availablePANTHERPTHR11239:SF15SUBFAMILY NOT NAMEDcoord: 1..40
score: 1.4E-73coord: 145..225
score: 1.4
NoneNo IPR availableunknownSSF57783Zinc beta-ribboncoord: 163..225
score: 1.42E-16coord: 1..36
score: 1.79

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG08g05130Cucsa.252620Cucumber (Gy14) v1cgycpeB0687
Cp4.1LG08g05130CmaCh14G015950Cucurbita maxima (Rimu)cmacpeB292
Cp4.1LG08g05130CmaCh06G015570Cucurbita maxima (Rimu)cmacpeB853
Cp4.1LG08g05130CmoCh06G015550Cucurbita moschata (Rifu)cmocpeB796
Cp4.1LG08g05130CmoCh14G016270Cucurbita moschata (Rifu)cmocpeB254
Cp4.1LG08g05130Cla021782Watermelon (97103) v1cpewmB845
Cp4.1LG08g05130Csa3G166240Cucumber (Chinese Long) v2cpecuB859
Cp4.1LG08g05130MELO3C006706Melon (DHL92) v3.5.1cpemeB813
Cp4.1LG08g05130ClCG05G006460Watermelon (Charleston Gray)cpewcgB787
Cp4.1LG08g05130CSPI03G14900Wild cucumber (PI 183967)cpecpiB861
Cp4.1LG08g05130Lsi05G015850Bottle gourd (USVL1VR-Ls)cpelsiB718
Cp4.1LG08g05130Bhi01G000773Wax gourdcpewgoB1110
Cp4.1LG08g05130CsGy3G015010Cucumber (Gy14) v2cgybcpeB454
Cp4.1LG08g05130Carg19630Silver-seed gourdcarcpeB0396
Cp4.1LG08g05130Carg23740Silver-seed gourdcarcpeB1321
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG08g05130Cp4.1LG03g11720Cucurbita pepo (Zucchini)cpecpeB482
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG08g05130Cucumber (Chinese Long) v3cpecucB1056
Cp4.1LG08g05130Wax gourdcpewgoB1102
Cp4.1LG08g05130Cucurbita pepo (Zucchini)cpecpeB194
Cp4.1LG08g05130Cucurbita pepo (Zucchini)cpecpeB343
Cp4.1LG08g05130Cucurbita maxima (Rimu)cmacpeB412
Cp4.1LG08g05130Cucurbita maxima (Rimu)cmacpeB931
Cp4.1LG08g05130Cucurbita moschata (Rifu)cmocpeB373
Cp4.1LG08g05130Cucurbita moschata (Rifu)cmocpeB866
Cp4.1LG08g05130Bottle gourd (USVL1VR-Ls)cpelsiB697
Cp4.1LG08g05130Watermelon (Charleston Gray)cpewcgB788
Cp4.1LG08g05130Watermelon (97103) v1cpewmB853
Cp4.1LG08g05130Melon (DHL92) v3.5.1cpemeB793
Cp4.1LG08g05130Melon (DHL92) v3.6.1cpemedB951
Cp4.1LG08g05130Silver-seed gourdcarcpeB0109
Cp4.1LG08g05130Silver-seed gourdcarcpeB0987