Cucsa.252620 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.252620
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionDNA-directed RNA polymerase subunit
Locationscaffold02229 : 1527409 .. 1529617 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTGAATCCTTGATCGACGTTTCTGGAAGGAAGCGCAGGTGATTTGGGATCGATCTTCTTCTTCGTTACACTCTTCAAAATCTCTCCTTTTCTTTTTTCATACCCAATCTTAGACTACCCCACTGATTCCTTCTGATTATCAGCTCCTAAAGCCCTAGCTGAAATTTTGTTTATTCTCTAGCTCAGGCTTCTCTCTTCTTCTACCCTCTACAAGATGAGTACCATGAAGTTTTGCCGGGAATGGTATGCATTATCATAACCACACTCTCCTCTACTTGCGCTTTCGTTCCTATGAAGTTTCCCCCCCCCCCGAAAATGTTGTAACCATTGATATTGTTATGTTGCAGTAACAACATTCTCTATCCGAAGGAGGATAGAGATGAGAAGATTCTTCTCTATGCCTGTCGCAACTGTGATCACCAGGTACCATTATTCTCTTTCTTTTGCATATTTCAATTTGTTTTGAAATGTGAACTTTTTTACTTTGTAGTAGTATTAACCTAGGATAAGAAAGGTTATTTGGGCCTGATTCAAGATTATCCCCTTAAATGCTCGGGCTTGCCTCTTTAGTTCGTCATCCTGTGTTAAAGCTTTCCTTATGGCGTCATGTTATCTCAGTTTTTTAGCCTGCCCTTCTATGAATTTGGATGGACCCCTTTGTTCTTTGGCTTTTATAGTCCACTTTCACATCTATAAATTTCAGTAAGGGAAGATTTATGAACATTATGATTTAACTAGTTATCATCTGATAGTATGAAATGCTAACGAGCCCATAAAGTCCTTTGTTGTAGATATGCATGTACAACTGTAATCATAATTTGAGAAAAATGGTAGAAAGGGCCTCTTGTTTCATTTAATCCAGGAGACGGAGTGTAACCTTTAAAAATTTTTAGGATGATATATATAACTTGTCTAATTCTGAAGGTTCCAAGTTTGATCTAATTTTTCATTGATTTTAGACTGTTACACTGTTATTTCACTCCCGGAGTTCACGAGATTGTCCAAGTTAACTTTCATGAGTTATCTTTGATTCTCCGGTTTCTTCGCATTTGTTTGTGTTCTTAAATTCTTTGGCATGTTAGCTATGGTGGAAAACTGGAAGGTTTTGAGCCTGTCTTCGACCAGTTGAATTACATATCTTATGTACTTTTATACAGTATATGTTTTCTTGATGGACCGTTGTTTGAACTTCCTCTCTGCTTTTGTGTAACTAATTGAAAGAAATTTTAATTTTTATCTACTGGTAGATAGACCTGCTTTCTGAGAATTGTATTTTAACCAATATAGTAGCCTTTTTTATTTGTTCCTAGGATTGCCACAAAATCACCCCATTGATGGGGGTGGACATATAAGTATCCATAGTTTTCCCCTGCTGTTCTCTCTTCTTTGACTTACTAATCCTCTTCTCTGTGTATGGAATTGTTTTATTTCTAGACATTGATGATTTCTTCCCTTCTTATTCCCAGTTCGTAATCATTCATTTTTTTATATATAAAAATTGTTTACAGGAAGTCGCTGACAATAACTGCGTCTATAGGAATGAGATTCATCATGCTGTAGGAGAACGCACTCAAGTTTTGCAAGATGTTGCTGCAGATCCAACTCTCCCTCGCACTAAAGCTGTCCGATGTGCTCAATGCAACCATGGAGAAGCTGTTTTCTTCCAGGTCCACTTTTTGCTTCCGAACTTTGATTTACAAGGCTTGAGCACGAGCACTCTTTTCCTTTATTCTCTCGATTGTTAACGTCATAGATTTTCAACACATGCTTTATTCTTACAACTCTTTAAGTAAGGTTCTCTTGAATGAGAAATATCAACTGTTAGTTTGCTTGTGTAATTGTGTGAAATTCTGTCAAGCTGCTTGGAGGTTTCATCATGTTTATACATGTATTAGCCTTGATGTCATTGGTTGTGTGTGCAGGCCACTGCCAGAGGAGAGGAAGGTATGACATTGTTCTTCGTTTGCTGCAATCCAAATTGTGGCCACAGATGGAGAGATTGATATCATATACATCTCCAATATGCATTCGAAGTTTAATTTGCACACCAAATGTTTTAACCATTTCATGCTTGAAGATGTTATCTTTTGCATGGTGGGTTTACAACTGTACTGATTGTCTATGTGGGTTGCTAAGAACCATCCTCATTGCAACTTCTCAATTTAACTTCCCAGAGATGTACTGGAACAATGCCATTTGTCTAAGTTTC

mRNA sequence

CTTGAATCCTTGATCGACGTTTCTGGAAGGAAGCGCAGGTGATTTGGGATCGATCTTCTTCTTCGTTACACTCTTCAAAATCTCTCCTTTTCTTTTTTCATACCCAATCTTAGACTACCCCACTGATTCCTTCTGATTATCAGCTCCTAAAGCCCTAGCTGAAATTTTGTTTATTCTCTAGCTCAGGCTTCTCTCTTCTTCTACCCTCTACAAGATGAGTACCATGAAGTTTTGCCGGGAATGTAACAACATTCTCTATCCGAAGGAGGATAGAGATGAGAAGATTCTTCTCTATGCCTGTCGCAACTGTGATCACCAGGAAGTCGCTGACAATAACTGCGTCTATAGGAATGAGATTCATCATGCTGTAGGAGAACGCACTCAAGTTTTGCAAGATGTTGCTGCAGATCCAACTCTCCCTCGCACTAAAGCTGTCCGATGTGCTCAATGCAACCATGGAGAAGCTGTTTTCTTCCAGGCCACTGCCAGAGGAGAGGAAGGTATGACATTGTTCTTCGTTTGCTGCAATCCAAATTGTGGCCACAGATGGAGAGATTGATATCATATACATCTCCAATATGCATTCGAAGTTTAATTTGCACACCAAATGTTTTAACCATTTCATGCTTGAAGATGTTATCTTTTGCATGGTGGGTTTACAACTGTACTGATTGTCTATGTGGGTTGCTAAGAACCATCCTCATTGCAACTTCTCAATTTAACTTCCCAGAGATGTACTGGAACAATGCCATTTGTCTAAGTTTC

Coding sequence (CDS)

ATGAGTACCATGAAGTTTTGCCGGGAATGTAACAACATTCTCTATCCGAAGGAGGATAGAGATGAGAAGATTCTTCTCTATGCCTGTCGCAACTGTGATCACCAGGAAGTCGCTGACAATAACTGCGTCTATAGGAATGAGATTCATCATGCTGTAGGAGAACGCACTCAAGTTTTGCAAGATGTTGCTGCAGATCCAACTCTCCCTCGCACTAAAGCTGTCCGATGTGCTCAATGCAACCATGGAGAAGCTGTTTTCTTCCAGGCCACTGCCAGAGGAGAGGAAGGTATGACATTGTTCTTCGTTTGCTGCAATCCAAATTGTGGCCACAGATGGAGAGATTGA

Protein sequence

MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD*
Homology
[Close]
BLAST of Cucsa.252620 vs. Swiss-Prot
Match: RPB9A_ARATH (DNA-directed RNA polymerases II, IV and V subunit 9A OS=Arabidopsis thaliana GN=NRPB9A PE=1 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 2.3e-59
Identity = 99/114 (86.84%), Postives = 110/114 (96.49%), Query Frame = 1 

Query: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60
           MSTMKFCRECNNILYPKED+++KILLYACRNCDHQEVADN+CVYRNE+HH+V ERTQ+L 
Sbjct: 1   MSTMKFCRECNNILYPKEDKEQKILLYACRNCDHQEVADNSCVYRNEVHHSVSERTQILT 60

Query: 61  DVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 115
           DVA+DPTLPRTKAVRC++C H EAVFFQATARGEEGMTLFFVCCNPNCGHRWR+
Sbjct: 61  DVASDPTLPRTKAVRCSKCQHREAVFFQATARGEEGMTLFFVCCNPNCGHRWRE 114

[Close]
BLAST of Cucsa.252620 vs. Swiss-Prot
Match: RPB9B_ARATH (DNA-directed RNA polymerases II, IV and V subunit 9B OS=Arabidopsis thaliana GN=NRPB9B PE=1 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 4.0e-59
Identity = 98/114 (85.96%), Postives = 108/114 (94.74%), Query Frame = 1 

Query: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60
           MSTMKFCRECNNILYPKED+++ ILLYACRNCDHQE ADNNCVYRNE+HH+V E+TQ+L 
Sbjct: 1   MSTMKFCRECNNILYPKEDKEQSILLYACRNCDHQEAADNNCVYRNEVHHSVSEQTQILS 60

Query: 61  DVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 115
           DVA+DPTLPRTKAVRCA+C HGEAVFFQATARGEEGMTLFFVCCNPNC HRWR+
Sbjct: 61  DVASDPTLPRTKAVRCAKCQHGEAVFFQATARGEEGMTLFFVCCNPNCSHRWRE 114

[Close]
BLAST of Cucsa.252620 vs. Swiss-Prot
Match: RPB9_BOVIN (DNA-directed RNA polymerase II subunit RPB9 OS=Bos taurus GN=POLR2I PE=1 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 1.5e-37
Identity = 66/112 (58.93%), Postives = 90/112 (80.36%), Query Frame = 1 

Query: 4   MKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVA 63
           ++FC+ECNN+LYPKED++ +ILLYACRNCD+Q+ ADN+C+Y N+I H V E TQ++ DV+
Sbjct: 14  IRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIADVS 73

Query: 64  ADPTLPRTKAVRCAQCNHGEAVFFQA-TARGEEGMTLFFVCCNPNCGHRWRD 115
            DPTLPRT+   C +C H EAVFFQ+ +AR E+ M L++VC  P+CGHRW +
Sbjct: 74  QDPTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125

[Close]
BLAST of Cucsa.252620 vs. Swiss-Prot
Match: RPB9_HUMAN (DNA-directed RNA polymerase II subunit RPB9 OS=Homo sapiens GN=POLR2I PE=1 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 1.5e-37
Identity = 66/112 (58.93%), Postives = 90/112 (80.36%), Query Frame = 1 

Query: 4   MKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVA 63
           ++FC+ECNN+LYPKED++ +ILLYACRNCD+Q+ ADN+C+Y N+I H V E TQ++ DV+
Sbjct: 14  IRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIADVS 73

Query: 64  ADPTLPRTKAVRCAQCNHGEAVFFQA-TARGEEGMTLFFVCCNPNCGHRWRD 115
            DPTLPRT+   C +C H EAVFFQ+ +AR E+ M L++VC  P+CGHRW +
Sbjct: 74  QDPTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125

[Close]
BLAST of Cucsa.252620 vs. Swiss-Prot
Match: RPB9_MOUSE (DNA-directed RNA polymerase II subunit RPB9 OS=Mus musculus GN=Polr2i PE=1 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 1.5e-37
Identity = 66/112 (58.93%), Postives = 90/112 (80.36%), Query Frame = 1 

Query: 4   MKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVA 63
           ++FC+ECNN+LYPKED++ +ILLYACRNCD+Q+ ADN+C+Y N+I H V E TQ++ DV+
Sbjct: 14  IRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIADVS 73

Query: 64  ADPTLPRTKAVRCAQCNHGEAVFFQA-TARGEEGMTLFFVCCNPNCGHRWRD 115
            DPTLPRT+   C +C H EAVFFQ+ +AR E+ M L++VC  P+CGHRW +
Sbjct: 74  QDPTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125

[Close]
BLAST of Cucsa.252620 vs. TrEMBL
Match: A0A0A0L816_CUCSA (DNA-directed RNA polymerase subunit OS=Cucumis sativus GN=Csa_3G166240 PE=3 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 2.8e-64
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1 

Query: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60
           MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ
Sbjct: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60

Query: 61  DVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 115
           DVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD
Sbjct: 61  DVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 114

[Close]
BLAST of Cucsa.252620 vs. TrEMBL
Match: A0A103XBI1_CYNCS (DNA-directed RNA polymerase subunit OS=Cynara cardunculus var. scolymus GN=Ccrd_025042 PE=3 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 7.0e-63
Identity = 111/114 (97.37%), Postives = 113/114 (99.12%), Query Frame = 1 

Query: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60
           MSTMKFCRECNNILYPKED+D+KILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ
Sbjct: 1   MSTMKFCRECNNILYPKEDKDQKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60

Query: 61  DVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 115
           DVAADPTLPRTKAVRCAQC HGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD
Sbjct: 61  DVAADPTLPRTKAVRCAQCGHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 114

[Close]
BLAST of Cucsa.252620 vs. TrEMBL
Match: A5AGZ7_VITVI (DNA-directed RNA polymerase subunit OS=Vitis vinifera GN=VIT_05s0077g01170 PE=3 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 1.3e-61
Identity = 108/114 (94.74%), Postives = 114/114 (100.00%), Query Frame = 1 

Query: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60
           MSTMKFCRECNNILYPKEDR++KILLYACRNCDHQEVA+NNCVYRNEIHH+VGERTQVLQ
Sbjct: 1   MSTMKFCRECNNILYPKEDREQKILLYACRNCDHQEVAENNCVYRNEIHHSVGERTQVLQ 60

Query: 61  DVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 115
           DVAADPTLPRTK+VRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCG+RWRD
Sbjct: 61  DVAADPTLPRTKSVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGYRWRD 114

[Close]
BLAST of Cucsa.252620 vs. TrEMBL
Match: M5XGV0_PRUPE (DNA-directed RNA polymerase subunit OS=Prunus persica GN=PRUPE_ppa013594mg PE=3 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 1.7e-61
Identity = 107/114 (93.86%), Postives = 113/114 (99.12%), Query Frame = 1 

Query: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60
           MSTMKFCRECNNILYPKED+D+KILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQ+LQ
Sbjct: 1   MSTMKFCRECNNILYPKEDKDQKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQILQ 60

Query: 61  DVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 115
           DVAADPTLPRTKAVRC++C HGEAVFFQATARGEEGMTLFFVCCNP+CGHRWRD
Sbjct: 61  DVAADPTLPRTKAVRCSECKHGEAVFFQATARGEEGMTLFFVCCNPSCGHRWRD 114

[Close]
BLAST of Cucsa.252620 vs. TrEMBL
Match: A0A0L9TGA8_PHAAN (DNA-directed RNA polymerase subunit OS=Phaseolus angularis GN=LR48_Vigan635s007400 PE=3 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 5.0e-61
Identity = 108/114 (94.74%), Postives = 112/114 (98.25%), Query Frame = 1 

Query: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60
           MSTMKFCRECNNILYPKEDRD+KILLYACRNCDHQEVADN CVYRNEIHH+VGERTQVLQ
Sbjct: 1   MSTMKFCRECNNILYPKEDRDQKILLYACRNCDHQEVADNFCVYRNEIHHSVGERTQVLQ 60

Query: 61  DVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 115
           DVAADPTLPRTK+VRC QCNHGEAVFFQATARGEEGMTLFFVCCNPNCG+RWRD
Sbjct: 61  DVAADPTLPRTKSVRCTQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGYRWRD 114

[Close]
BLAST of Cucsa.252620 vs. TAIR10
Match: AT3G16980.1 (AT3G16980.1 RNA polymerases M/15 Kd subunit)

HSP 1 Score: 229.2 bits (583), Expect = 1.3e-60
Identity = 99/114 (86.84%), Postives = 110/114 (96.49%), Query Frame = 1 

Query: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60
           MSTMKFCRECNNILYPKED+++KILLYACRNCDHQEVADN+CVYRNE+HH+V ERTQ+L 
Sbjct: 1   MSTMKFCRECNNILYPKEDKEQKILLYACRNCDHQEVADNSCVYRNEVHHSVSERTQILT 60

Query: 61  DVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 115
           DVA+DPTLPRTKAVRC++C H EAVFFQATARGEEGMTLFFVCCNPNCGHRWR+
Sbjct: 61  DVASDPTLPRTKAVRCSKCQHREAVFFQATARGEEGMTLFFVCCNPNCGHRWRE 114

[Close]
BLAST of Cucsa.252620 vs. TAIR10
Match: AT4G16265.1 (AT4G16265.1 RNA polymerases M/15 Kd subunit)

HSP 1 Score: 228.4 bits (581), Expect = 2.2e-60
Identity = 98/114 (85.96%), Postives = 108/114 (94.74%), Query Frame = 1 

Query: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60
           MSTMKFCRECNNILYPKED+++ ILLYACRNCDHQE ADNNCVYRNE+HH+V E+TQ+L 
Sbjct: 1   MSTMKFCRECNNILYPKEDKEQSILLYACRNCDHQEAADNNCVYRNEVHHSVSEQTQILS 60

Query: 61  DVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 115
           DVA+DPTLPRTKAVRCA+C HGEAVFFQATARGEEGMTLFFVCCNPNC HRWR+
Sbjct: 61  DVASDPTLPRTKAVRCAKCQHGEAVFFQATARGEEGMTLFFVCCNPNCSHRWRE 114

[Close]
BLAST of Cucsa.252620 vs. NCBI nr
Match: gi|659076932|ref|XP_008438942.1| (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A [Cucumis melo])

HSP 1 Score: 252.3 bits (643), Expect = 4.1e-64
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1 

Query: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60
           MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ
Sbjct: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60

Query: 61  DVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 115
           DVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD
Sbjct: 61  DVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 114

[Close]
BLAST of Cucsa.252620 vs. NCBI nr
Match: gi|976898897|gb|KVH87674.1| (DNA-directed RNA polymerase, M/15kDa subunit [Cynara cardunculus var. scolymus])

HSP 1 Score: 247.7 bits (631), Expect = 1.0e-62
Identity = 111/114 (97.37%), Postives = 113/114 (99.12%), Query Frame = 1 

Query: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60
           MSTMKFCRECNNILYPKED+D+KILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ
Sbjct: 1   MSTMKFCRECNNILYPKEDKDQKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60

Query: 61  DVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 115
           DVAADPTLPRTKAVRCAQC HGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD
Sbjct: 61  DVAADPTLPRTKAVRCAQCGHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 114

[Close]
BLAST of Cucsa.252620 vs. NCBI nr
Match: gi|720038529|ref|XP_010268008.1| (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A [Nelumbo nucifera])

HSP 1 Score: 245.0 bits (624), Expect = 6.5e-62
Identity = 108/114 (94.74%), Postives = 114/114 (100.00%), Query Frame = 1 

Query: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60
           MSTMKFCRECNNILYPKED+++KILLYACRNCDHQEVADNNCVYRNEIHH+VGERTQVLQ
Sbjct: 1   MSTMKFCRECNNILYPKEDKEQKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQ 60

Query: 61  DVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 115
           DVAADPTLPRTK+VRCAQCNHGEAVFFQAT+RGEEGMTLFFVCCNPNCGHRWRD
Sbjct: 61  DVAADPTLPRTKSVRCAQCNHGEAVFFQATSRGEEGMTLFFVCCNPNCGHRWRD 114

[Close]
BLAST of Cucsa.252620 vs. NCBI nr
Match: gi|1012109297|ref|XP_015959557.1| (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A [Arachis duranensis])

HSP 1 Score: 244.2 bits (622), Expect = 1.1e-61
Identity = 108/114 (94.74%), Postives = 113/114 (99.12%), Query Frame = 1 

Query: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60
           MSTMKFCRECNNILYPKEDR++KILLYACRNCDHQEVADNNCVYRNE+HH+VGERTQVLQ
Sbjct: 1   MSTMKFCRECNNILYPKEDREQKILLYACRNCDHQEVADNNCVYRNEVHHSVGERTQVLQ 60

Query: 61  DVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 115
           DVAADPTLPRTKAVRC QCNHGEAVFFQATARGEEGMTLFFVCCNPNCG+RWRD
Sbjct: 61  DVAADPTLPRTKAVRCVQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGYRWRD 114

[Close]
BLAST of Cucsa.252620 vs. NCBI nr
Match: gi|225431922|ref|XP_002276956.1| (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A [Vitis vinifera])

HSP 1 Score: 243.4 bits (620), Expect = 1.9e-61
Identity = 108/114 (94.74%), Postives = 114/114 (100.00%), Query Frame = 1 

Query: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60
           MSTMKFCRECNNILYPKEDR++KILLYACRNCDHQEVA+NNCVYRNEIHH+VGERTQVLQ
Sbjct: 1   MSTMKFCRECNNILYPKEDREQKILLYACRNCDHQEVAENNCVYRNEIHHSVGERTQVLQ 60

Query: 61  DVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 115
           DVAADPTLPRTK+VRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCG+RWRD
Sbjct: 61  DVAADPTLPRTKSVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGYRWRD 114

The following BLAST results are available for this feature:
BLAST of Cucsa.252620 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RPB9A_ARATH2.3e-5986.84DNA-directed RNA polymerases II, IV and V subunit 9A OS=Arabidopsis thaliana GN=... [more]
RPB9B_ARATH4.0e-5985.96DNA-directed RNA polymerases II, IV and V subunit 9B OS=Arabidopsis thaliana GN=... [more]
RPB9_BOVIN1.5e-3758.93DNA-directed RNA polymerase II subunit RPB9 OS=Bos taurus GN=POLR2I PE=1 SV=1[more]
RPB9_HUMAN1.5e-3758.93DNA-directed RNA polymerase II subunit RPB9 OS=Homo sapiens GN=POLR2I PE=1 SV=1[more]
RPB9_MOUSE1.5e-3758.93DNA-directed RNA polymerase II subunit RPB9 OS=Mus musculus GN=Polr2i PE=1 SV=1[more]
BLAST of Cucsa.252620 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L816_CUCSA2.8e-64100.00DNA-directed RNA polymerase subunit OS=Cucumis sativus GN=Csa_3G166240 PE=3 SV=1[more]
A0A103XBI1_CYNCS7.0e-6397.37DNA-directed RNA polymerase subunit OS=Cynara cardunculus var. scolymus GN=Ccrd_... [more]
A5AGZ7_VITVI1.3e-6194.74DNA-directed RNA polymerase subunit OS=Vitis vinifera GN=VIT_05s0077g01170 PE=3 ... [more]
M5XGV0_PRUPE1.7e-6193.86DNA-directed RNA polymerase subunit OS=Prunus persica GN=PRUPE_ppa013594mg PE=3 ... [more]
A0A0L9TGA8_PHAAN5.0e-6194.74DNA-directed RNA polymerase subunit OS=Phaseolus angularis GN=LR48_Vigan635s0074... [more]
BLAST of Cucsa.252620 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G16980.11.3e-6086.84 RNA polymerases M/15 Kd subunit[more]
AT4G16265.12.2e-6085.96 RNA polymerases M/15 Kd subunit[more]
BLAST of Cucsa.252620 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659076932|ref|XP_008438942.1|4.1e-64100.00PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A [Cucumis melo][more]
gi|976898897|gb|KVH87674.1|1.0e-6297.37DNA-directed RNA polymerase, M/15kDa subunit [Cynara cardunculus var. scolymus][more]
gi|720038529|ref|XP_010268008.1|6.5e-6294.74PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A [Nelumbo nucifer... [more]
gi|1012109297|ref|XP_015959557.1|1.1e-6194.74PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A [Arachis duranen... [more]
gi|225431922|ref|XP_002276956.1|1.9e-6194.74PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001222Znf_TFIIS
IPR001529DNA-dir_RNA_pol_M/15kDasu
IPR012164Rpa12/Rpb9/Rpc10/TFS
IPR019761DNA-dir_RNA_pol-M_15_CS
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0005730 nucleolus
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed RNA polymerase activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.252620.1Cucsa.252620.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001222Zinc finger, TFIIS-typePFAMPF01096TFIIS_Ccoord: 75..113
score: 6.4
IPR001222Zinc finger, TFIIS-typeSMARTSM00440Cys4_2coord: 74..114
score: 2.
IPR001222Zinc finger, TFIIS-typePROFILEPS51133ZF_TFIIS_2coord: 72..113
score: 1
IPR001529DNA-directed RNA polymerase, M/15kDa subunitPFAMPF02150RNA_POL_M_15KDcoord: 4..36
score: 3.0
IPR001529DNA-directed RNA polymerase, M/15kDa subunitSMARTSM00661rpol9cneucoord: 5..58
score: 7.7
IPR012164DNA-directed RNA polymerase subunit/transcription factor SPIRPIRSF005586RNApol_RpoMcoord: 4..114
score: 4.8
IPR019761DNA-directed RNA polymerase M, 15kDa subunit, conserved sitePROSITEPS01030RNA_POL_M_15KDcoord: 6..32
scor
NoneNo IPR availableGENE3DG3DSA:2.20.25.10coord: 1..46
score: 4.5E-26coord: 48..114
score: 2.4
NoneNo IPR availablePANTHERPTHR11239DNA-DIRECTED RNA POLYMERASEcoord: 1..114
score: 1.2
NoneNo IPR availablePANTHERPTHR11239:SF15SUBFAMILY NOT NAMEDcoord: 1..114
score: 1.2
NoneNo IPR availableunknownSSF57783Zinc beta-ribboncoord: 1..48
score: 9.86E-19coord: 52..114
score: 2.21

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.252620Cla021782Watermelon (97103) v1cgywmB479
Cucsa.252620Csa3G166240Cucumber (Chinese Long) v2cgycuB366
Cucsa.252620MELO3C006706Melon (DHL92) v3.5.1cgymeB439
Cucsa.252620ClCG05G006460Watermelon (Charleston Gray)cgywcgB451
Cucsa.252620CSPI03G14900Wild cucumber (PI 183967)cgycpiB383
Cucsa.252620CmaCh14G015950Cucurbita maxima (Rimu)cgycmaB0709
Cucsa.252620CmaCh06G015570Cucurbita maxima (Rimu)cgycmaB0727
Cucsa.252620CmoCh06G015550Cucurbita moschata (Rifu)cgycmoB0718
Cucsa.252620CmoCh14G016270Cucurbita moschata (Rifu)cgycmoB0700
Cucsa.252620Lsi05G015850Bottle gourd (USVL1VR-Ls)cgylsiB420
Cucsa.252620Cp4.1LG08g05130Cucurbita pepo (Zucchini)cgycpeB0687
Cucsa.252620Cp4.1LG03g11720Cucurbita pepo (Zucchini)cgycpeB0682
Cucsa.252620Cla97C05G088090Watermelon (97103) v2cgywmbB452
Cucsa.252620Bhi01G000773Wax gourdcgywgoB522
Cucsa.252620Carg19630Silver-seed gourdcarcgyB0329
Cucsa.252620Carg23740Silver-seed gourdcarcgyB1072
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.252620Cucurbita moschata (Rifu)cgycmoB0707
Cucsa.252620Cucurbita moschata (Rifu)cgycmoB0720
Cucsa.252620Melon (DHL92) v3.5.1cgymeB430
Cucsa.252620Watermelon (Charleston Gray)cgywcgB453
Cucsa.252620Watermelon (97103) v1cgywmB483
Cucsa.252620Cucurbita pepo (Zucchini)cgycpeB0671
Cucsa.252620Cucurbita pepo (Zucchini)cgycpeB0678
Cucsa.252620Bottle gourd (USVL1VR-Ls)cgylsiB412
Cucsa.252620Melon (DHL92) v3.6.1cgymedB425
Cucsa.252620Melon (DHL92) v3.6.1cgymedB427
Cucsa.252620Melon (DHL92) v3.6.1cgymedB432
Cucsa.252620Silver-seed gourdcarcgyB0083
Cucsa.252620Silver-seed gourdcarcgyB0788
Cucsa.252620Cucumber (Chinese Long) v3cgycucB387
Cucsa.252620Watermelon (97103) v2cgywmbB453
Cucsa.252620Wax gourdcgywgoB512
Cucsa.252620Cucurbita maxima (Rimu)cgycmaB0714
Cucsa.252620Cucurbita maxima (Rimu)cgycmaB0731