MELO3C006706 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C006706
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionDNA-directed RNA polymerase subunit
Locationchr6 : 5231373 .. 5233582 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTTACAAGTTCTACACTTTCTCCCGCCATTGGAAGAAAGCTCTCGTCTTTGGCTTGATCGACGTTTCTAGAAGCGCAGGCGATTTGGGATCGATCTTTTTCTTCATTACACTCTTCAAAATCTCTCCTTTTCTTTTTTCATACACAATCTTAGACTACCCCACTGATTCCTTCTGATTATCAGCTGCTAAAGCCCTAGCAGAAATTTTGTTCAATCTCTGGCTCAGGCTTCTCTCTTTTTCTACCCTTTACAAGATGAGTACCATGAAGTTTTGCCGGGAATGGTATGCATTATCATAATCACACTCTCGTCCACTTGCGCTTTCGTTCTTATGAAGTTTTTTTAACCCCGAAAATGTTGTAACCATTGATATTGTTATGTTGCAGTAACAACATTCTCTATCCGAAGGAGGATAGAGATGAGAAGATTCTTCTCTATGCCTGTCGCAACTGTGATCACCAGGTACCTTTATTACTTTCTTTTTTTTTTTGCATATTTCAATTTGTTTTGGAATGTGAACTTCTTTTCTTTGTTGTAGAATTGACCTAGGATAAGGAAGGTTATTTGGGCCGGATTCAAGACTATGCCCTTAAATGCTCGGGCTTGCCTCTTTAGTTCGTCATCCTGTGTTAAAGTTTTCCTTATGGCGTCATGTTATCTCTGTTTTTTAGCCTGCCCTTCTATGAACTTGGATGGACCTCTTTGTTCTTTGGCTTTTGTAGTTTATTTTCACATCTATAAATTTCAGTAAGGGAAGATTTATGAACATTATGATTTAACTAGTTATCATCTGATAATATGAAATGCTAACGAGCCCATACATTCCTTAGTTGAAGGTATGCATGTACGAAATCATAATTTGAGAAAAATGGTAGAAAGGGCCTCTCGTTTCTTTTAATCCAGGAGAGGTAGTGTAACCTTTATAAAATTTTTAGTATGATATATAGAACTTATTTAATTCTGAAGGTTCCAAGTTTGATCTAATTTTTCATTAATTTTAGAGTGTTATACTGTTATCTCACTCCCGGGAGATCGTGAGGTTGTCCAAGTTAATTTTCACGAGTTATCTTTGATTCTCCGGTTCCTTTACATTTATTTGTATTCTTAAATTCTTTGGCATGTTAACTATGGTGGGAAACTGGAAGGTTTTAAGCCTTGTTTCTAACCAATATAGTAGCCCTTTTTATTTGTTCCTAGAATTGCCACAAAATAACCCCATTGATGGGGGTGGACATATATAAGTACCCATATTTTACCCCCTGCTGTTCTCTTCTTTTTCACTTACTGATCCTCTTCTGTGTATGGACTTGTTTTATATCTAGATATTGATGGTTTCTTCTCCTCTTATTCCCAGTTTGTATTCTTTCATTTTTTTCATATATAAAAATTGTGTTTACAGGAAGTCGCTGACAATAACTGCGTCTATAGGAATGAGATTCATCATGCTGTAGGGGAACGCACTCAAGTTTTGCAAGATGTTGCTGCGGATCCAACCCTCCCTCGCACTAAAGCTGTCCGATGTGCTCAATGCAACCATGGAGAAGCTGTTTTCTTCCAGGTCCACTTTTCCTTTTTTTTTTCGGTGGAAATACTTCCTTTTTGCTTCCGAACTTTGATTTACGAGGCTTGAGCACTCTTTTATTTTATTCTCTCGATTGTTAACGCCATAGATTTTCAACACATGCTTTGTTCTTTTCATCTCCCAAAATTTTAATAAGGTTCTTTTGAACGAGAAATATAAACTGTTAGTTTGCTTGTGTAGTTGTGTGAAATTCTGTCAAGCTGCTTGGAGGTTTCATCATGTTTATACTTGTATTTGCCTTGATGTCATTGCGTTGTGCCTGCAGGCCACTGCCAGAGGAGAGGAAGGTATGACATTGTTTTTCGTTTGCTGCAATCCAAATTGTGGCCACAGATGGAGAGACTGATATCAAACACATCTCCAATATGCAATCGAAGTTTAATTGGCACACCAAATGTTTTAACCATTTTATGCTTGAAAGTGTAATCTTTTGCATTGTGGGTTTACAATTGTACTGATTCTATGTGGGTTGTTAAGAACCATTATCATTGCAACTTCTCAATTTCTCAATTTAACTTCCCAGAGATGTACCGGAACAATGCCATTTGTCTAAATTCGTTTCACTCCCGGCTTGGAAAAACTAATATCTTGAAAAAAAACCGTTGGAATTCGAGTAAAAATTTCATG

mRNA sequence

ATTTACAAGTTCTACACTTTCTCCCGCCATTGGAAGAAAGCTCTCGTCTTTGGCTTGATCGACGTTTCTAGAAGCGCAGGCGATTTGGGATCGATCTTTTTCTTCATTACACTCTTCAAAATCTCTCCTTTTCTTTTTTCATACACAATCTTAGACTACCCCACTGATTCCTTCTGATTATCAGCTGCTAAAGCCCTAGCAGAAATTTTGTTCAATCTCTGGCTCAGGCTTCTCTCTTTTTCTACCCTTTACAAGATGAGTACCATGAAGTTTTGCCGGGAATGTAACAACATTCTCTATCCGAAGGAGGATAGAGATGAGAAGATTCTTCTCTATGCCTGTCGCAACTGTGATCACCAGGAAGTCGCTGACAATAACTGCGTCTATAGGAATGAGATTCATCATGCTGTAGGGGAACGCACTCAAGTTTTGCAAGATGTTGCTGCGGATCCAACCCTCCCTCGCACTAAAGCTGTCCGATGTGCTCAATGCAACCATGGAGAAGCTGTTTTCTTCCAGTTGTGTGAAATTCTGTCAAGCTGCTTGGAGGTTTCATCATGTTTATACTTGTATTTGCCTTGATGTCATTGCGTTGTGCCTGCAGGCCACTGCCAGAGGAGAGGAAGGTATGACATTGTTTTTCGTTTGCTGCAATCCAAATTGTGGCCACAGATGGAGAGACTGATATCAAACACATCTCCAATATGCAATCGAAGTTTAATTGGCACACCAAATGTTTTAACCATTTTATGCTTGAAAGTGTAATCTTTTGCATTGTGGGTTTACAATTGTACTGATTCTATGTGGGTTGTTAAGAACCATTATCATTGCAACTTCTCAATTTCTCAATTTAACTTCCCAGAGATGTACCGGAACAATGCCATTTGTCTAAATTCGTTTCACTCCCGGCTTGGAAAAACTAATATCTTGAAAAAAAACCGTTGGAATTCGAGTAAAAATTTCATG

Coding sequence (CDS)

ATGAGTACCATGAAGTTTTGCCGGGAATGTAACAACATTCTCTATCCGAAGGAGGATAGAGATGAGAAGATTCTTCTCTATGCCTGTCGCAACTGTGATCACCAGGAAGTCGCTGACAATAACTGCGTCTATAGGAATGAGATTCATCATGCTGTAGGGGAACGCACTCAAGTTTTGCAAGATGTTGCTGCGGATCCAACCCTCCCTCGCACTAAAGCTGTCCGATGTGCTCAATGCAACCATGGAGAAGCTGTTTTCTTCCAGTTGTGTGAAATTCTGTCAAGCTGCTTGGAGGTTTCATCATGTTTATACTTGTATTTGCCTTGA

Protein sequence

MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQLCEILSSCLEVSSCLYLYLP*
Homology
[Close]
BLAST of MELO3C006706 vs. Swiss-Prot
Match: RPB9B_ARATH (DNA-directed RNA polymerases II, IV and V subunit 9B OS=Arabidopsis thaliana GN=NRPB9B PE=1 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 4.2e-42
Identity = 74/88 (84.09%), Postives = 81/88 (92.05%), Query Frame = 1 

Query: 1  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60
          MSTMKFCRECNNILYPKED+++ ILLYACRNCDHQE ADNNCVYRNE+HH+V E+TQ+L 
Sbjct: 1  MSTMKFCRECNNILYPKEDKEQSILLYACRNCDHQEAADNNCVYRNEVHHSVSEQTQILS 60

Query: 61 DVAADPTLPRTKAVRCAQCNHGEAVFFQ 89
          DVA+DPTLPRTKAVRCA+C HGEAVFFQ
Sbjct: 61 DVASDPTLPRTKAVRCAKCQHGEAVFFQ 88

[Close]
BLAST of MELO3C006706 vs. Swiss-Prot
Match: RPB9A_ARATH (DNA-directed RNA polymerases II, IV and V subunit 9A OS=Arabidopsis thaliana GN=NRPB9A PE=1 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.2e-41
Identity = 74/88 (84.09%), Postives = 82/88 (93.18%), Query Frame = 1 

Query: 1  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60
          MSTMKFCRECNNILYPKED+++KILLYACRNCDHQEVADN+CVYRNE+HH+V ERTQ+L 
Sbjct: 1  MSTMKFCRECNNILYPKEDKEQKILLYACRNCDHQEVADNSCVYRNEVHHSVSERTQILT 60

Query: 61 DVAADPTLPRTKAVRCAQCNHGEAVFFQ 89
          DVA+DPTLPRTKAVRC++C H EAVFFQ
Sbjct: 61 DVASDPTLPRTKAVRCSKCQHREAVFFQ 88

[Close]
BLAST of MELO3C006706 vs. Swiss-Prot
Match: RPB9_BOVIN (DNA-directed RNA polymerase II subunit RPB9 OS=Bos taurus GN=POLR2I PE=1 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.5e-28
Identity = 53/85 (62.35%), Postives = 68/85 (80.00%), Query Frame = 1 

Query: 4  MKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVA 63
          ++FC+ECNN+LYPKED++ +ILLYACRNCD+Q+ ADN+C+Y N+I H V E TQ++ DV+
Sbjct: 14 IRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIADVS 73

Query: 64 ADPTLPRTKAVRCAQCNHGEAVFFQ 89
           DPTLPRT+   C +C H EAVFFQ
Sbjct: 74 QDPTLPRTEDHPCQKCGHKEAVFFQ 98

[Close]
BLAST of MELO3C006706 vs. Swiss-Prot
Match: RPB9_HUMAN (DNA-directed RNA polymerase II subunit RPB9 OS=Homo sapiens GN=POLR2I PE=1 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.5e-28
Identity = 53/85 (62.35%), Postives = 68/85 (80.00%), Query Frame = 1 

Query: 4  MKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVA 63
          ++FC+ECNN+LYPKED++ +ILLYACRNCD+Q+ ADN+C+Y N+I H V E TQ++ DV+
Sbjct: 14 IRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIADVS 73

Query: 64 ADPTLPRTKAVRCAQCNHGEAVFFQ 89
           DPTLPRT+   C +C H EAVFFQ
Sbjct: 74 QDPTLPRTEDHPCQKCGHKEAVFFQ 98

[Close]
BLAST of MELO3C006706 vs. Swiss-Prot
Match: RPB9_MOUSE (DNA-directed RNA polymerase II subunit RPB9 OS=Mus musculus GN=Polr2i PE=1 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.5e-28
Identity = 53/85 (62.35%), Postives = 68/85 (80.00%), Query Frame = 1 

Query: 4  MKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVA 63
          ++FC+ECNN+LYPKED++ +ILLYACRNCD+Q+ ADN+C+Y N+I H V E TQ++ DV+
Sbjct: 14 IRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIADVS 73

Query: 64 ADPTLPRTKAVRCAQCNHGEAVFFQ 89
           DPTLPRT+   C +C H EAVFFQ
Sbjct: 74 QDPTLPRTEDHPCQKCGHKEAVFFQ 98

[Close]
BLAST of MELO3C006706 vs. TrEMBL
Match: A0A0A0L816_CUCSA (DNA-directed RNA polymerase subunit OS=Cucumis sativus GN=Csa_3G166240 PE=3 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 4.3e-46
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1 

Query: 1  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60
          MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ
Sbjct: 1  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60

Query: 61 DVAADPTLPRTKAVRCAQCNHGEAVFFQ 89
          DVAADPTLPRTKAVRCAQCNHGEAVFFQ
Sbjct: 61 DVAADPTLPRTKAVRCAQCNHGEAVFFQ 88

[Close]
BLAST of MELO3C006706 vs. TrEMBL
Match: A0A103XBI1_CYNCS (DNA-directed RNA polymerase subunit OS=Cynara cardunculus var. scolymus GN=Ccrd_025042 PE=3 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 1.1e-44
Identity = 85/88 (96.59%), Postives = 87/88 (98.86%), Query Frame = 1 

Query: 1  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60
          MSTMKFCRECNNILYPKED+D+KILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ
Sbjct: 1  MSTMKFCRECNNILYPKEDKDQKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60

Query: 61 DVAADPTLPRTKAVRCAQCNHGEAVFFQ 89
          DVAADPTLPRTKAVRCAQC HGEAVFFQ
Sbjct: 61 DVAADPTLPRTKAVRCAQCGHGEAVFFQ 88

[Close]
BLAST of MELO3C006706 vs. TrEMBL
Match: A5AGZ7_VITVI (DNA-directed RNA polymerase subunit OS=Vitis vinifera GN=VIT_05s0077g01170 PE=3 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 4.1e-44
Identity = 83/88 (94.32%), Postives = 88/88 (100.00%), Query Frame = 1 

Query: 1  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60
          MSTMKFCRECNNILYPKEDR++KILLYACRNCDHQEVA+NNCVYRNEIHH+VGERTQVLQ
Sbjct: 1  MSTMKFCRECNNILYPKEDREQKILLYACRNCDHQEVAENNCVYRNEIHHSVGERTQVLQ 60

Query: 61 DVAADPTLPRTKAVRCAQCNHGEAVFFQ 89
          DVAADPTLPRTK+VRCAQCNHGEAVFFQ
Sbjct: 61 DVAADPTLPRTKSVRCAQCNHGEAVFFQ 88

[Close]
BLAST of MELO3C006706 vs. TrEMBL
Match: A0A151R076_CAJCA (DNA-directed RNA polymerase subunit OS=Cajanus cajan GN=KK1_043022 PE=3 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 6.9e-44
Identity = 84/88 (95.45%), Postives = 86/88 (97.73%), Query Frame = 1 

Query: 1  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60
          MSTMKFCRECNNILYPKEDRD+KILLYACRNCDHQEVADN CVYRNEIHH+VGERTQVLQ
Sbjct: 1  MSTMKFCRECNNILYPKEDRDQKILLYACRNCDHQEVADNFCVYRNEIHHSVGERTQVLQ 60

Query: 61 DVAADPTLPRTKAVRCAQCNHGEAVFFQ 89
          DVAADPTLPRTKAVRC QCNHGEAVFFQ
Sbjct: 61 DVAADPTLPRTKAVRCTQCNHGEAVFFQ 88

[Close]
BLAST of MELO3C006706 vs. TrEMBL
Match: M5XGV0_PRUPE (DNA-directed RNA polymerase subunit OS=Prunus persica GN=PRUPE_ppa013594mg PE=3 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 6.9e-44
Identity = 82/88 (93.18%), Postives = 87/88 (98.86%), Query Frame = 1 

Query: 1  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60
          MSTMKFCRECNNILYPKED+D+KILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQ+LQ
Sbjct: 1  MSTMKFCRECNNILYPKEDKDQKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQILQ 60

Query: 61 DVAADPTLPRTKAVRCAQCNHGEAVFFQ 89
          DVAADPTLPRTKAVRC++C HGEAVFFQ
Sbjct: 61 DVAADPTLPRTKAVRCSECKHGEAVFFQ 88

[Close]
BLAST of MELO3C006706 vs. TAIR10
Match: AT4G16265.1 (AT4G16265.1 RNA polymerases M/15 Kd subunit)

HSP 1 Score: 171.8 bits (434), Expect = 2.3e-43
Identity = 74/88 (84.09%), Postives = 81/88 (92.05%), Query Frame = 1 

Query: 1  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60
          MSTMKFCRECNNILYPKED+++ ILLYACRNCDHQE ADNNCVYRNE+HH+V E+TQ+L 
Sbjct: 1  MSTMKFCRECNNILYPKEDKEQSILLYACRNCDHQEAADNNCVYRNEVHHSVSEQTQILS 60

Query: 61 DVAADPTLPRTKAVRCAQCNHGEAVFFQ 89
          DVA+DPTLPRTKAVRCA+C HGEAVFFQ
Sbjct: 61 DVASDPTLPRTKAVRCAKCQHGEAVFFQ 88

[Close]
BLAST of MELO3C006706 vs. TAIR10
Match: AT3G16980.1 (AT3G16980.1 RNA polymerases M/15 Kd subunit)

HSP 1 Score: 170.2 bits (430), Expect = 6.8e-43
Identity = 74/88 (84.09%), Postives = 82/88 (93.18%), Query Frame = 1 

Query: 1  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60
          MSTMKFCRECNNILYPKED+++KILLYACRNCDHQEVADN+CVYRNE+HH+V ERTQ+L 
Sbjct: 1  MSTMKFCRECNNILYPKEDKEQKILLYACRNCDHQEVADNSCVYRNEVHHSVSERTQILT 60

Query: 61 DVAADPTLPRTKAVRCAQCNHGEAVFFQ 89
          DVA+DPTLPRTKAVRC++C H EAVFFQ
Sbjct: 61 DVASDPTLPRTKAVRCSKCQHREAVFFQ 88

[Close]
BLAST of MELO3C006706 vs. NCBI nr
Match: gi|659076932|ref|XP_008438942.1| (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A [Cucumis melo])

HSP 1 Score: 191.8 bits (486), Expect = 6.2e-46
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1 

Query: 1  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60
          MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ
Sbjct: 1  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60

Query: 61 DVAADPTLPRTKAVRCAQCNHGEAVFFQ 89
          DVAADPTLPRTKAVRCAQCNHGEAVFFQ
Sbjct: 61 DVAADPTLPRTKAVRCAQCNHGEAVFFQ 88

[Close]
BLAST of MELO3C006706 vs. NCBI nr
Match: gi|976898897|gb|KVH87674.1| (DNA-directed RNA polymerase, M/15kDa subunit [Cynara cardunculus var. scolymus])

HSP 1 Score: 187.2 bits (474), Expect = 1.5e-44
Identity = 85/88 (96.59%), Postives = 87/88 (98.86%), Query Frame = 1 

Query: 1  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60
          MSTMKFCRECNNILYPKED+D+KILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ
Sbjct: 1  MSTMKFCRECNNILYPKEDKDQKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60

Query: 61 DVAADPTLPRTKAVRCAQCNHGEAVFFQ 89
          DVAADPTLPRTKAVRCAQC HGEAVFFQ
Sbjct: 61 DVAADPTLPRTKAVRCAQCGHGEAVFFQ 88

[Close]
BLAST of MELO3C006706 vs. NCBI nr
Match: gi|1012109297|ref|XP_015959557.1| (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A [Arachis duranensis])

HSP 1 Score: 186.0 bits (471), Expect = 3.4e-44
Identity = 83/88 (94.32%), Postives = 87/88 (98.86%), Query Frame = 1 

Query: 1  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60
          MSTMKFCRECNNILYPKEDR++KILLYACRNCDHQEVADNNCVYRNE+HH+VGERTQVLQ
Sbjct: 1  MSTMKFCRECNNILYPKEDREQKILLYACRNCDHQEVADNNCVYRNEVHHSVGERTQVLQ 60

Query: 61 DVAADPTLPRTKAVRCAQCNHGEAVFFQ 89
          DVAADPTLPRTKAVRC QCNHGEAVFFQ
Sbjct: 61 DVAADPTLPRTKAVRCVQCNHGEAVFFQ 88

[Close]
BLAST of MELO3C006706 vs. NCBI nr
Match: gi|720038529|ref|XP_010268008.1| (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A [Nelumbo nucifera])

HSP 1 Score: 185.7 bits (470), Expect = 4.5e-44
Identity = 83/88 (94.32%), Postives = 88/88 (100.00%), Query Frame = 1 

Query: 1  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60
          MSTMKFCRECNNILYPKED+++KILLYACRNCDHQEVADNNCVYRNEIHH+VGERTQVLQ
Sbjct: 1  MSTMKFCRECNNILYPKEDKEQKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQ 60

Query: 61 DVAADPTLPRTKAVRCAQCNHGEAVFFQ 89
          DVAADPTLPRTK+VRCAQCNHGEAVFFQ
Sbjct: 61 DVAADPTLPRTKSVRCAQCNHGEAVFFQ 88

[Close]
BLAST of MELO3C006706 vs. NCBI nr
Match: gi|225431922|ref|XP_002276956.1| (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A [Vitis vinifera])

HSP 1 Score: 185.3 bits (469), Expect = 5.8e-44
Identity = 83/88 (94.32%), Postives = 88/88 (100.00%), Query Frame = 1 

Query: 1  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60
          MSTMKFCRECNNILYPKEDR++KILLYACRNCDHQEVA+NNCVYRNEIHH+VGERTQVLQ
Sbjct: 1  MSTMKFCRECNNILYPKEDREQKILLYACRNCDHQEVAENNCVYRNEIHHSVGERTQVLQ 60

Query: 61 DVAADPTLPRTKAVRCAQCNHGEAVFFQ 89
          DVAADPTLPRTK+VRCAQCNHGEAVFFQ
Sbjct: 61 DVAADPTLPRTKSVRCAQCNHGEAVFFQ 88

The following BLAST results are available for this feature:
BLAST of MELO3C006706 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RPB9B_ARATH4.2e-4284.09DNA-directed RNA polymerases II, IV and V subunit 9B OS=Arabidopsis thaliana GN=... [more]
RPB9A_ARATH1.2e-4184.09DNA-directed RNA polymerases II, IV and V subunit 9A OS=Arabidopsis thaliana GN=... [more]
RPB9_BOVIN1.5e-2862.35DNA-directed RNA polymerase II subunit RPB9 OS=Bos taurus GN=POLR2I PE=1 SV=1[more]
RPB9_HUMAN1.5e-2862.35DNA-directed RNA polymerase II subunit RPB9 OS=Homo sapiens GN=POLR2I PE=1 SV=1[more]
RPB9_MOUSE1.5e-2862.35DNA-directed RNA polymerase II subunit RPB9 OS=Mus musculus GN=Polr2i PE=1 SV=1[more]
BLAST of MELO3C006706 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L816_CUCSA4.3e-46100.00DNA-directed RNA polymerase subunit OS=Cucumis sativus GN=Csa_3G166240 PE=3 SV=1[more]
A0A103XBI1_CYNCS1.1e-4496.59DNA-directed RNA polymerase subunit OS=Cynara cardunculus var. scolymus GN=Ccrd_... [more]
A5AGZ7_VITVI4.1e-4494.32DNA-directed RNA polymerase subunit OS=Vitis vinifera GN=VIT_05s0077g01170 PE=3 ... [more]
A0A151R076_CAJCA6.9e-4495.45DNA-directed RNA polymerase subunit OS=Cajanus cajan GN=KK1_043022 PE=3 SV=1[more]
M5XGV0_PRUPE6.9e-4493.18DNA-directed RNA polymerase subunit OS=Prunus persica GN=PRUPE_ppa013594mg PE=3 ... [more]
BLAST of MELO3C006706 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G16265.12.3e-4384.09 RNA polymerases M/15 Kd subunit[more]
AT3G16980.16.8e-4384.09 RNA polymerases M/15 Kd subunit[more]
BLAST of MELO3C006706 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659076932|ref|XP_008438942.1|6.2e-46100.00PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A [Cucumis melo][more]
gi|976898897|gb|KVH87674.1|1.5e-4496.59DNA-directed RNA polymerase, M/15kDa subunit [Cynara cardunculus var. scolymus][more]
gi|1012109297|ref|XP_015959557.1|3.4e-4494.32PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A [Arachis duranen... [more]
gi|720038529|ref|XP_010268008.1|4.5e-4494.32PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A [Nelumbo nucifer... [more]
gi|225431922|ref|XP_002276956.1|5.8e-4494.32PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001529DNA-dir_RNA_pol_M/15kDasu
IPR019761DNA-dir_RNA_pol-M_15_CS
IPR001222Znf_TFIIS
IPR001529DNA-dir_RNA_pol_M/15kDasu
IPR012164Rpa12/Rpb9/Rpc10/TFS
IPR019761DNA-dir_RNA_pol-M_15_CS
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
GO:0006351transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0001193 maintenance of transcriptional fidelity during DNA-templated transcription elongation from RNA polymerase II promoter
biological_process GO:0006283 transcription-coupled nucleotide-excision repair
biological_process GO:0006367 transcription initiation from RNA polymerase II promoter
biological_process GO:0006379 mRNA cleavage
cellular_component GO:0005730 nucleolus
cellular_component GO:0005665 DNA-directed RNA polymerase II, core complex
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed RNA polymerase activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU43479melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C006706T1MELO3C006706T1mRNA
MELO3C006706T2MELO3C006706T2mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU43479MU43479transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001222Zinc finger, TFIIS-typePFAMPF01096TFIIS_Ccoord: 75..113
score: 6.4
IPR001222Zinc finger, TFIIS-typeSMARTSM00440Cys4_2coord: 74..114
score: 2.
IPR001222Zinc finger, TFIIS-typePROFILEPS51133ZF_TFIIS_2coord: 72..113
score: 1
IPR001529DNA-directed RNA polymerase, M/15kDa subunitPFAMPF02150RNA_POL_M_15KDcoord: 4..36
score: 3.0
IPR001529DNA-directed RNA polymerase, M/15kDa subunitSMARTSM00661rpol9cneucoord: 5..58
score: 7.7
IPR012164DNA-directed RNA polymerase subunit/transcription factor SPIRPIRSF005586RNApol_RpoMcoord: 4..114
score: 4.8
IPR019761DNA-directed RNA polymerase M, 15kDa subunit, conserved sitePROSITEPS01030RNA_POL_M_15KDcoord: 6..32
scor
NoneNo IPR availableGENE3DG3DSA:2.20.25.10coord: 1..46
score: 4.5E-26coord: 48..114
score: 2.4
NoneNo IPR availablePANTHERPTHR11239DNA-DIRECTED RNA POLYMERASEcoord: 1..114
score: 1.2
NoneNo IPR availablePANTHERPTHR11239:SF15SUBFAMILY NOT NAMEDcoord: 1..114
score: 1.2
NoneNo IPR availableunknownSSF57783Zinc beta-ribboncoord: 1..48
score: 9.86E-19coord: 52..114
score: 2.21

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C006706Csa3G166240Cucumber (Chinese Long) v2cumeB236
MELO3C006706Cla021782Watermelon (97103) v1mewmB461
MELO3C006706ClCG05G006460Watermelon (Charleston Gray)mewcgB427
MELO3C006706Cla97C05G088090Watermelon (97103) v2mewmbB434
MELO3C006706Bhi01G000773Wax gourdmewgoB529
MELO3C006706CSPI03G14900Wild cucumber (PI 183967)cpimeB230
MELO3C006706Cucsa.252620Cucumber (Gy14) v1cgymeB439
MELO3C006706CmaCh06G015570Cucurbita maxima (Rimu)cmameB763
MELO3C006706CmaCh14G015950Cucurbita maxima (Rimu)cmameB242
MELO3C006706Lsi05G015850Bottle gourd (USVL1VR-Ls)lsimeB369
MELO3C006706Cp4.1LG03g11720Cucurbita pepo (Zucchini)cpemeB585
MELO3C006706Cp4.1LG08g05130Cucurbita pepo (Zucchini)cpemeB813
MELO3C006706CsGy3G015010Cucumber (Gy14) v2cgybmeB200
MELO3C006706Carg23740Silver-seed gourdcarmeB0934
MELO3C006706Carg19630Silver-seed gourdcarmeB0280
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C006706Silver-seed gourdcarmeB0074
MELO3C006706Silver-seed gourdcarmeB0701
MELO3C006706Cucumber (Chinese Long) v3cucmeB236
MELO3C006706Watermelon (97103) v2mewmbB448
MELO3C006706Wax gourdmewgoB519
MELO3C006706Melon (DHL92) v3.5.1memeB051
MELO3C006706Melon (DHL92) v3.5.1memeB113
MELO3C006706Cucurbita maxima (Rimu)cmameB342
MELO3C006706Cucurbita maxima (Rimu)cmameB850
MELO3C006706Cucurbita moschata (Rifu)cmomeB230
MELO3C006706Cucurbita moschata (Rifu)cmomeB335
MELO3C006706Cucurbita moschata (Rifu)cmomeB832
MELO3C006706Cucurbita moschata (Rifu)cmomeB755
MELO3C006706Watermelon (Charleston Gray)mewcgB442
MELO3C006706Watermelon (97103) v1mewmB486
MELO3C006706Cucurbita pepo (Zucchini)cpemeB140
MELO3C006706Cucurbita pepo (Zucchini)cpemeB314
MELO3C006706Bottle gourd (USVL1VR-Ls)lsimeB029