CsGy3G015010 (gene) Cucumber (Gy14) v2

Overview
NameCsGy3G015010
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionDNA-directed RNA polymerase subunit
LocationChr3 : 11040514 .. 11042940 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGGCTGTGGAATTGGAAGCCCATTTACAAGTCTACACTTTCTCCCGCCATTGGAAGAAAGCTCTTGTGTTCGGCTTGAATCCTTGATCGACGTTTCTGGAAGGAAGCGCAGGTGATTTGGGATCGATCTTCTTCTTCGTTACACTCTTCAAAATCTCTCCTTTTCTTTTTTCATACCCAATCTTAGACTACCCCACTGATTCCTTCTGATTATCAGCTCCTAAAGCCCTAGCTGAAATTTTGTTTATTCTCTAGCTCAGGCTTCTCTCTTCTTCTACCCTCTACAAGATGAGTACCATGAAGTTTTGCCGGGAATGGTATGCATTATCATAACCACACTCTCCTCTACTTGCGCTTTCGTTCCTATGAAGTTTCCCCCCCCCCCGAAAATGTTGTAACCATTGATATTGTTATGTTGCAGTAACAACATTCTCTATCCGAAGGAGGATAGAGATGAGAAGATTCTTCTCTATGCCTGTCGCAACTGTGATCACCAGGTACCATTATTCTCTTTCTTTTGCATATTTCAATTTGTTTTGAAATGTGAACTTTTTTACTTTGTAGTAGTATTAACCTAGGATAAGAAAGGTTATTTGGGCCTGATTCAAGATTATCCCCTTAAATGCTCGGGCTTGCCTCTTTAGTTCGTCATCCTGTGTTAAAGCTTTCCTTATGGCGTCATGTTATCTCAGTTTTTTAGCCTGCCCTTCTATGAATTTGGATGGACCCCTTTGTTCTTTGGCTTTTATAGTCCACTTTCACATCTATAAATTTCAGTAAGGGAAGATTTATGAACATTATGATTTAACTAGTTATCATCTGATAGTATGAAATGCTAACGAGCCCATAAAGTCCTTTGTTGTAGATATGCATGTACAACTGTAATCATAATTTGAGAAAAATGGTAGAAAGGGCCTCTTGTTTCATTTAATCCAGGAGACGGAGTGTAACCTTTAAAAATTTTTAGGATGATATATATAACTTGTCTAATTCTGAAGGTTCCAAGTTTGATCTAATTTTTCATTGATTTTAGACTGTTACACTGTTATTTCACTCCCGGAGTTCACGAGATTGTCCAAGTTAACTTTCATGAGTTATCTTTGATTCTCCGGTTTCTTCGCATTTGTTTGTGTTCTTAAATTCTTTGGCATGTTAGCTATGGTGGAAAACTGGAAGGTTTTGAGCCTGTCTTCGACCAGTTGAATTACATATCTTATGTACTTTTATACAGTATATGTTTTCTTGATGGACCGTTGTTTGAACTTCCTCTCTGCTTTTGTGTAACTAATTGAAAGAAATTTTAATTTTTATCTACTGGTAGATAGACCTGCTTTCTGAGAATTGTATTTTAACCAATATAGTAGCCTTTTTTATTTGTTCCTAGGATTGCCACAAAATCACCCCATTGATGGGGGTGGACATATAAGTATCCATAGTTTTCCCCTGCTGTTCTCTCTTCTTTGACTTACTAATCCTCTTCTCTGTGTATGGAATTGTTTTATTTCTAGACATTGATGATTTCTTCCCTTCTTATTCCCAGTTCGTAATCATTCATTTTTTTATATATAAAAATTGTTTACAGGAAGTCGCTGACAATAACTGCGTCTATAGGAATGAGATTCATCATGCTGTAGGAGAACGCACTCAAGTTTTGCAAGATGTTGCTGCAGATCCAACTCTCCCTCGCACTAAAGCTGTCCGATGTGCTCAATGCAACCATGGAGAAGCTGTTTTCTTCCAGGTCCACTTTTTGCTTCCGAACTTTGATTTACAAGGCTTGAGCACGAGCACTCTTTTCCTTTATTCTCTCGATTGTTAACGTCATAGATTTTCAACACATGCTTTATTCTTACAACTCTTTAAGTAAGGTTCTCTTGAATGAGAAATATCAACTGTTAGTTTGCTTGTGTAATTGTGTGAAATTCTGTCAAGCTGCTTGGAGGTTTCATCATGTTTATACATGTATTAGCCTTGATGTCATTGGTTGTGTGTGCAGGCCACTGCCAGAGGAGAGGAAGGTATGACATTGTTCTTCGTTTGCTGCAATCCAAATTGTGGCCACAGATGGAGAGATTGATATCATATACATCTCCAATATGCATTCGAAGTTTAATTTGCACACCAAATGTTTTAACCATTTCATGCTTGAAGATGTTATCTTTTGCATGGTGGGTTTACAACTGTACTGATTGTCTATGTGGGTTGCTAAGAACCATCCTCATTGCAACTTCTCAATTTAACTTCCCAGAGATGTACTGGAACAATGCCATTTGTCTAAGTTTCGTTTCACTCTCAGCTTGGAAAAATTAAAATCTTGAAAAAAAATCTTAAAATGTTATAGTAAAAATTTATGAAACCGATTCTATATTTAAACTTTGGTCATTTGTCCTAAAAATGCAACAAAAATGATTATAATTCGGAAGTGTTT

mRNA sequence

GGGCTGTGGAATTGGAAGCCCATTTACAAGTCTACACTTTCTCCCGCCATTGGAAGAAAGCTCTTGTGTTCGGCTTGAATCCTTGATCGACGTTTCTGGAAGGAAGCGCAGGTGATTTGGGATCGATCTTCTTCTTCGTTACACTCTTCAAAATCTCTCCTTTTCTTTTTTCATACCCAATCTTAGACTACCCCACTGATTCCTTCTGATTATCAGCTCCTAAAGCCCTAGCTGAAATTTTGTTTATTCTCTAGCTCAGGCTTCTCTCTTCTTCTACCCTCTACAAGATGAGTACCATGAAGTTTTGCCGGGAATGTAACAACATTCTCTATCCGAAGGAGGATAGAGATGAGAAGATTCTTCTCTATGCCTGTCGCAACTGTGATCACCAGGAAGTCGCTGACAATAACTGCGTCTATAGGAATGAGATTCATCATGCTGTAGGAGAACGCACTCAAGTTTTGCAAGATGTTGCTGCAGATCCAACTCTCCCTCGCACTAAAGCTGTCCGATGTGCTCAATGCAACCATGGAGAAGCTGTTTTCTTCCAGGCCACTGCCAGAGGAGAGGAAGGTATGACATTGTTCTTCGTTTGCTGCAATCCAAATTGTGGCCACAGATGGAGAGATTGATATCATATACATCTCCAATATGCATTCGAAGTTTAATTTGCACACCAAATGTTTTAACCATTTCATGCTTGAAGATGTTATCTTTTGCATGGTGGGTTTACAACTGTACTGATTGTCTATGTGGGTTGCTAAGAACCATCCTCATTGCAACTTCTCAATTTAACTTCCCAGAGATGTACTGGAACAATGCCATTTGTCTAAGTTTCGTTTCACTCTCAGCTTGGAAAAATTAAAATCTTGAAAAAAAATCTTAAAATGTTATAGTAAAAATTTATGAAACCGATTCTATATTTAAACTTTGGTCATTTGTCCTAAAAATGCAACAAAAATGATTATAATTCGGAAGTGTTT

Coding sequence (CDS)

ATGAGTACCATGAAGTTTTGCCGGGAATGTAACAACATTCTCTATCCGAAGGAGGATAGAGATGAGAAGATTCTTCTCTATGCCTGTCGCAACTGTGATCACCAGGAAGTCGCTGACAATAACTGCGTCTATAGGAATGAGATTCATCATGCTGTAGGAGAACGCACTCAAGTTTTGCAAGATGTTGCTGCAGATCCAACTCTCCCTCGCACTAAAGCTGTCCGATGTGCTCAATGCAACCATGGAGAAGCTGTTTTCTTCCAGGCCACTGCCAGAGGAGAGGAAGGTATGACATTGTTCTTCGTTTGCTGCAATCCAAATTGTGGCCACAGATGGAGAGATTGA

Protein sequence

MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD
Homology
[Close]
BLAST of CsGy3G015010 vs. NCBI nr
Match: XP_008438942.1 (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A [Cucumis melo] >XP_011651080.1 PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A [Cucumis sativus] >XP_022137993.1 DNA-directed RNA polymerases II, IV and V subunit 9A isoform X2 [Momordica charantia] >XP_022939240.1 DNA-directed RNA polymerases II, IV and V subunit 9A [Cucurbita moschata] >XP_022972305.1 DNA-directed RNA polymerases II, IV and V subunit 9A [Cucurbita maxima] >XP_022972306.1 DNA-directed RNA polymerases II, IV and V subunit 9A [Cucurbita maxima] >XP_023539282.1 DNA-directed RNA polymerases II, IV and V subunit 9A [Cucurbita pepo subsp. pepo] >XP_023539283.1 DNA-directed RNA polymerases II, IV and V subunit 9A [Cucurbita pepo subsp. pepo] >KGN57159.1 hypothetical protein Csa_3G166240 [Cucumis sativus])

HSP 1 Score: 254.2 bits (648), Expect = 2.1e-64
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0 

Query: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60
           MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ
Sbjct: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60

Query: 61  DVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 115
           DVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD
Sbjct: 61  DVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 114

[Close]
BLAST of CsGy3G015010 vs. NCBI nr
Match: XP_024019992.1 (DNA-directed RNA polymerases II, IV and V subunit 9A [Morus notabilis])

HSP 1 Score: 250.8 bits (639), Expect = 2.3e-63
Identity = 111/114 (97.37%), Postives = 114/114 (100.00%), Query Frame = 0 

Query: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60
           MSTMKFCRECNNILYPKEDRD+KILLYACRNCDHQEVADNNCVYRNEIHH+VGERTQVLQ
Sbjct: 1   MSTMKFCRECNNILYPKEDRDQKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQ 60

Query: 61  DVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 115
           DVAADPTLPRTK+VRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD
Sbjct: 61  DVAADPTLPRTKSVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 114

[Close]
BLAST of CsGy3G015010 vs. NCBI nr
Match: XP_024963039.1 (DNA-directed RNA polymerases II, IV and V subunit 9A [Cynara cardunculus var. scolymus] >KVH87674.1 DNA-directed RNA polymerase, M/15kDa subunit [Cynara cardunculus var. scolymus])

HSP 1 Score: 249.6 bits (636), Expect = 5.1e-63
Identity = 111/114 (97.37%), Postives = 113/114 (99.12%), Query Frame = 0 

Query: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60
           MSTMKFCRECNNILYPKED+D+KILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ
Sbjct: 1   MSTMKFCRECNNILYPKEDKDQKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60

Query: 61  DVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 115
           DVAADPTLPRTKAVRCAQC HGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD
Sbjct: 61  DVAADPTLPRTKAVRCAQCGHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 114

[Close]
BLAST of CsGy3G015010 vs. NCBI nr
Match: XP_024986373.1 (DNA-directed RNA polymerases II, IV and V subunit 9B [Cynara cardunculus var. scolymus] >XP_024986374.1 DNA-directed RNA polymerases II, IV and V subunit 9B [Cynara cardunculus var. scolymus] >XP_024986376.1 DNA-directed RNA polymerases II, IV and V subunit 9B [Cynara cardunculus var. scolymus])

HSP 1 Score: 248.1 bits (632), Expect = 1.5e-62
Identity = 110/114 (96.49%), Postives = 112/114 (98.25%), Query Frame = 0 

Query: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60
           MSTMKFCRECNNILYPKED+D+KILLYACRNCDHQE ADNNCVYRNEIHHAVGERTQVLQ
Sbjct: 1   MSTMKFCRECNNILYPKEDKDQKILLYACRNCDHQEAADNNCVYRNEIHHAVGERTQVLQ 60

Query: 61  DVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 115
           DVAADPTLPRTKAVRCAQC HGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD
Sbjct: 61  DVAADPTLPRTKAVRCAQCGHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 114

[Close]
BLAST of CsGy3G015010 vs. NCBI nr
Match: PON61921.1 (DNA-directed RNA polymerase subunit/transcription factor [Parasponia andersonii] >PON93217.1 DNA-directed RNA polymerase subunit/transcription factor [Trema orientalis])

HSP 1 Score: 247.7 bits (631), Expect = 1.9e-62
Identity = 110/114 (96.49%), Postives = 113/114 (99.12%), Query Frame = 0 

Query: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60
           MSTMKFCRECNNILYPKEDRD KILLYACRNCDHQEVADNNCVYRNEIHH+VGERTQVLQ
Sbjct: 1   MSTMKFCRECNNILYPKEDRDNKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQ 60

Query: 61  DVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 115
           DVAADPTLPRTK+VRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCG+RWRD
Sbjct: 61  DVAADPTLPRTKSVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGYRWRD 114

[Close]
BLAST of CsGy3G015010 vs. TAIR10
Match: AT3G16980.1 (RNA polymerases M/15 Kd subunit)

HSP 1 Score: 231.1 bits (588), Expect = 3.4e-61
Identity = 99/114 (86.84%), Postives = 110/114 (96.49%), Query Frame = 0 

Query: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60
           MSTMKFCRECNNILYPKED+++KILLYACRNCDHQEVADN+CVYRNE+HH+V ERTQ+L 
Sbjct: 1   MSTMKFCRECNNILYPKEDKEQKILLYACRNCDHQEVADNSCVYRNEVHHSVSERTQILT 60

Query: 61  DVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 115
           DVA+DPTLPRTKAVRC++C H EAVFFQATARGEEGMTLFFVCCNPNCGHRWR+
Sbjct: 61  DVASDPTLPRTKAVRCSKCQHREAVFFQATARGEEGMTLFFVCCNPNCGHRWRE 114

[Close]
BLAST of CsGy3G015010 vs. TAIR10
Match: AT4G16265.1 (RNA polymerases M/15 Kd subunit)

HSP 1 Score: 230.3 bits (586), Expect = 5.8e-61
Identity = 98/114 (85.96%), Postives = 108/114 (94.74%), Query Frame = 0 

Query: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60
           MSTMKFCRECNNILYPKED+++ ILLYACRNCDHQE ADNNCVYRNE+HH+V E+TQ+L 
Sbjct: 1   MSTMKFCRECNNILYPKEDKEQSILLYACRNCDHQEAADNNCVYRNEVHHSVSEQTQILS 60

Query: 61  DVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 115
           DVA+DPTLPRTKAVRCA+C HGEAVFFQATARGEEGMTLFFVCCNPNC HRWR+
Sbjct: 61  DVASDPTLPRTKAVRCAKCQHGEAVFFQATARGEEGMTLFFVCCNPNCSHRWRE 114

[Close]
BLAST of CsGy3G015010 vs. Swiss-Prot
Match: sp|Q6NLH0|RPB9A_ARATH (DNA-directed RNA polymerases II, IV and V subunit 9A OS=Arabidopsis thaliana OX=3702 GN=NRPB9A PE=1 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 6.1e-60
Identity = 99/114 (86.84%), Postives = 110/114 (96.49%), Query Frame = 0 

Query: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60
           MSTMKFCRECNNILYPKED+++KILLYACRNCDHQEVADN+CVYRNE+HH+V ERTQ+L 
Sbjct: 1   MSTMKFCRECNNILYPKEDKEQKILLYACRNCDHQEVADNSCVYRNEVHHSVSERTQILT 60

Query: 61  DVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 115
           DVA+DPTLPRTKAVRC++C H EAVFFQATARGEEGMTLFFVCCNPNCGHRWR+
Sbjct: 61  DVASDPTLPRTKAVRCSKCQHREAVFFQATARGEEGMTLFFVCCNPNCGHRWRE 114

[Close]
BLAST of CsGy3G015010 vs. Swiss-Prot
Match: sp|Q8L5V0|RPB9B_ARATH (DNA-directed RNA polymerases II, IV and V subunit 9B OS=Arabidopsis thaliana OX=3702 GN=NRPB9B PE=1 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 1.0e-59
Identity = 98/114 (85.96%), Postives = 108/114 (94.74%), Query Frame = 0 

Query: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60
           MSTMKFCRECNNILYPKED+++ ILLYACRNCDHQE ADNNCVYRNE+HH+V E+TQ+L 
Sbjct: 1   MSTMKFCRECNNILYPKEDKEQSILLYACRNCDHQEAADNNCVYRNEVHHSVSEQTQILS 60

Query: 61  DVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 115
           DVA+DPTLPRTKAVRCA+C HGEAVFFQATARGEEGMTLFFVCCNPNC HRWR+
Sbjct: 61  DVASDPTLPRTKAVRCAKCQHGEAVFFQATARGEEGMTLFFVCCNPNCSHRWRE 114

[Close]
BLAST of CsGy3G015010 vs. Swiss-Prot
Match: sp|Q32P73|RPB9_BOVIN (DNA-directed RNA polymerase II subunit RPB9 OS=Bos taurus OX=9913 GN=POLR2I PE=1 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 5.1e-38
Identity = 66/112 (58.93%), Postives = 90/112 (80.36%), Query Frame = 0 

Query: 4   MKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVA 63
           ++FC+ECNN+LYPKED++ +ILLYACRNCD+Q+ ADN+C+Y N+I H V E TQ++ DV+
Sbjct: 14  IRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIADVS 73

Query: 64  ADPTLPRTKAVRCAQCNHGEAVFFQA-TARGEEGMTLFFVCCNPNCGHRWRD 115
            DPTLPRT+   C +C H EAVFFQ+ +AR E+ M L++VC  P+CGHRW +
Sbjct: 74  QDPTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125

[Close]
BLAST of CsGy3G015010 vs. Swiss-Prot
Match: sp|P36954|RPB9_HUMAN (DNA-directed RNA polymerase II subunit RPB9 OS=Homo sapiens OX=9606 GN=POLR2I PE=1 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 5.1e-38
Identity = 66/112 (58.93%), Postives = 90/112 (80.36%), Query Frame = 0 

Query: 4   MKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVA 63
           ++FC+ECNN+LYPKED++ +ILLYACRNCD+Q+ ADN+C+Y N+I H V E TQ++ DV+
Sbjct: 14  IRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIADVS 73

Query: 64  ADPTLPRTKAVRCAQCNHGEAVFFQA-TARGEEGMTLFFVCCNPNCGHRWRD 115
            DPTLPRT+   C +C H EAVFFQ+ +AR E+ M L++VC  P+CGHRW +
Sbjct: 74  QDPTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125

[Close]
BLAST of CsGy3G015010 vs. Swiss-Prot
Match: sp|P60898|RPB9_MOUSE (DNA-directed RNA polymerase II subunit RPB9 OS=Mus musculus OX=10090 GN=Polr2i PE=1 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 5.1e-38
Identity = 66/112 (58.93%), Postives = 90/112 (80.36%), Query Frame = 0 

Query: 4   MKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVA 63
           ++FC+ECNN+LYPKED++ +ILLYACRNCD+Q+ ADN+C+Y N+I H V E TQ++ DV+
Sbjct: 14  IRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIADVS 73

Query: 64  ADPTLPRTKAVRCAQCNHGEAVFFQA-TARGEEGMTLFFVCCNPNCGHRWRD 115
            DPTLPRT+   C +C H EAVFFQ+ +AR E+ M L++VC  P+CGHRW +
Sbjct: 74  QDPTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125

[Close]
BLAST of CsGy3G015010 vs. TrEMBL
Match: tr|A0A1S3AY93|A0A1S3AY93_CUCME (DNA-directed RNA polymerase subunit OS=Cucumis melo OX=3656 GN=LOC103483886 PE=3 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 1.4e-64
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0 

Query: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60
           MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ
Sbjct: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60

Query: 61  DVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 115
           DVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD
Sbjct: 61  DVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 114

[Close]
BLAST of CsGy3G015010 vs. TrEMBL
Match: tr|A0A0A0L816|A0A0A0L816_CUCSA (DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 GN=Csa_3G166240 PE=3 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 1.4e-64
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0 

Query: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60
           MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ
Sbjct: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60

Query: 61  DVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 115
           DVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD
Sbjct: 61  DVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 114

[Close]
BLAST of CsGy3G015010 vs. TrEMBL
Match: tr|A0A103XBI1|A0A103XBI1_CYNCS (DNA-directed RNA polymerase subunit OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_025042 PE=3 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 3.4e-63
Identity = 111/114 (97.37%), Postives = 113/114 (99.12%), Query Frame = 0 

Query: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60
           MSTMKFCRECNNILYPKED+D+KILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ
Sbjct: 1   MSTMKFCRECNNILYPKEDKDQKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60

Query: 61  DVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 115
           DVAADPTLPRTKAVRCAQC HGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD
Sbjct: 61  DVAADPTLPRTKAVRCAQCGHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 114

[Close]
BLAST of CsGy3G015010 vs. TrEMBL
Match: tr|A0A2P5F602|A0A2P5F602_9ROSA (DNA-directed RNA polymerase subunit OS=Trema orientalis OX=63057 GN=TorRG33x02_111230 PE=3 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 1.3e-62
Identity = 110/114 (96.49%), Postives = 113/114 (99.12%), Query Frame = 0 

Query: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60
           MSTMKFCRECNNILYPKEDRD KILLYACRNCDHQEVADNNCVYRNEIHH+VGERTQVLQ
Sbjct: 1   MSTMKFCRECNNILYPKEDRDNKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQ 60

Query: 61  DVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 115
           DVAADPTLPRTK+VRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCG+RWRD
Sbjct: 61  DVAADPTLPRTKSVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGYRWRD 114

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BLAST of CsGy3G015010 vs. TrEMBL
Match: tr|A0A2P5CLL0|A0A2P5CLL0_PARAD (DNA-directed RNA polymerase subunit OS=Parasponia andersonii OX=3476 GN=PanWU01x14_141230 PE=3 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 1.3e-62
Identity = 110/114 (96.49%), Postives = 113/114 (99.12%), Query Frame = 0 

Query: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60
           MSTMKFCRECNNILYPKEDRD KILLYACRNCDHQEVADNNCVYRNEIHH+VGERTQVLQ
Sbjct: 1   MSTMKFCRECNNILYPKEDRDNKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQ 60

Query: 61  DVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 115
           DVAADPTLPRTK+VRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCG+RWRD
Sbjct: 61  DVAADPTLPRTKSVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGYRWRD 114

The following BLAST results are available for this feature:
BLAST of CsGy3G015010 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008438942.12.1e-64100.00PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A [Cucumis melo] >... [more]
XP_024019992.12.3e-6397.37DNA-directed RNA polymerases II, IV and V subunit 9A [Morus notabilis][more]
XP_024963039.15.1e-6397.37DNA-directed RNA polymerases II, IV and V subunit 9A [Cynara cardunculus var. sc... [more]
XP_024986373.11.5e-6296.49DNA-directed RNA polymerases II, IV and V subunit 9B [Cynara cardunculus var. sc... [more]
PON61921.11.9e-6296.49DNA-directed RNA polymerase subunit/transcription factor [Parasponia andersonii]... [more]
BLAST of CsGy3G015010 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G16980.13.4e-6186.84RNA polymerases M/15 Kd subunit[more]
AT4G16265.15.8e-6185.96RNA polymerases M/15 Kd subunit[more]
BLAST of CsGy3G015010 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q6NLH0|RPB9A_ARATH6.1e-6086.84DNA-directed RNA polymerases II, IV and V subunit 9A OS=Arabidopsis thaliana OX=... [more]
sp|Q8L5V0|RPB9B_ARATH1.0e-5985.96DNA-directed RNA polymerases II, IV and V subunit 9B OS=Arabidopsis thaliana OX=... [more]
sp|Q32P73|RPB9_BOVIN5.1e-3858.93DNA-directed RNA polymerase II subunit RPB9 OS=Bos taurus OX=9913 GN=POLR2I PE=1... [more]
sp|P36954|RPB9_HUMAN5.1e-3858.93DNA-directed RNA polymerase II subunit RPB9 OS=Homo sapiens OX=9606 GN=POLR2I PE... [more]
sp|P60898|RPB9_MOUSE5.1e-3858.93DNA-directed RNA polymerase II subunit RPB9 OS=Mus musculus OX=10090 GN=Polr2i P... [more]
BLAST of CsGy3G015010 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3AY93|A0A1S3AY93_CUCME1.4e-64100.00DNA-directed RNA polymerase subunit OS=Cucumis melo OX=3656 GN=LOC103483886 PE=3... [more]
tr|A0A0A0L816|A0A0A0L816_CUCSA1.4e-64100.00DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 GN=Csa_3G166240 P... [more]
tr|A0A103XBI1|A0A103XBI1_CYNCS3.4e-6397.37DNA-directed RNA polymerase subunit OS=Cynara cardunculus var. scolymus OX=59895... [more]
tr|A0A2P5F602|A0A2P5F602_9ROSA1.3e-6296.49DNA-directed RNA polymerase subunit OS=Trema orientalis OX=63057 GN=TorRG33x02_1... [more]
tr|A0A2P5CLL0|A0A2P5CLL0_PARAD1.3e-6296.49DNA-directed RNA polymerase subunit OS=Parasponia andersonii OX=3476 GN=PanWU01x... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006379mRNA cleavage
GO:0006351transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR034012Zn_ribbon_RPB9_C
IPR019761DNA-dir_RNA_pol-M_15_CS
IPR012164Rpa12/Rpb9/Rpc10/TFS
IPR001529DNA-dir_RNA_pol_M/15kDasu
IPR001222Znf_TFIIS
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0001193 maintenance of transcriptional fidelity during DNA-templated transcription elongation from RNA polymerase II promoter
biological_process GO:0006379 mRNA cleavage
biological_process GO:0006283 transcription-coupled nucleotide-excision repair
biological_process GO:0006367 transcription initiation from RNA polymerase II promoter
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0005665 DNA-directed RNA polymerase II, core complex
cellular_component GO:0005730 nucleolus
cellular_component GO:0005575 cellular_component
molecular_function GO:0003899 DNA-directed RNA polymerase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy3G015010.1CsGy3G015010.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001222Zinc finger, TFIIS-typeSMARTSM00440Cys4_2coord: 74..114
e-value: 2.3E-6
score: 37.2
IPR001222Zinc finger, TFIIS-typePFAMPF01096TFIIS_Ccoord: 75..113
e-value: 6.6E-11
score: 41.8
IPR001222Zinc finger, TFIIS-typePROSITEPS51133ZF_TFIIS_2coord: 72..113
score: 12.77
IPR001529DNA-directed RNA polymerase, M/15kDa subunitSMARTSM00661rpol9cneucoord: 5..58
e-value: 7.7E-16
score: 68.6
IPR001529DNA-directed RNA polymerase, M/15kDa subunitPFAMPF02150RNA_POL_M_15KDcoord: 4..36
e-value: 3.1E-11
score: 42.8
NoneNo IPR availableGENE3DG3DSA:2.20.25.10coord: 1..46
e-value: 2.9E-26
score: 92.6
NoneNo IPR availableGENE3DG3DSA:2.20.25.10coord: 47..114
e-value: 1.2E-30
score: 107.1
NoneNo IPR availablePANTHERPTHR11239DNA-DIRECTED RNA POLYMERASEcoord: 1..114
NoneNo IPR availablePANTHERPTHR11239:SF15SUBFAMILY NOT NAMEDcoord: 1..114
NoneNo IPR availableSUPERFAMILYSSF57783Zinc beta-ribboncoord: 52..114
NoneNo IPR availableSUPERFAMILYSSF57783Zinc beta-ribboncoord: 1..48
IPR012164DNA-directed RNA polymerase subunit/transcription factor SPIRSFPIRSF005586RNApol_RpoMcoord: 4..114
e-value: 5.9E-20
score: 69.8
IPR019761DNA-directed RNA polymerase M, 15kDa subunit, conserved sitePROSITEPS01030RNA_POL_M_15KDcoord: 6..32
IPR034012Pol II subunit B9, C-terminal zinc ribbonCDDcd10508Zn-ribbon_RPB9coord: 64..113
e-value: 1.52477E-20
score: 78.0638

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy3G015010Cla021782Watermelon (97103) v1cgybwmB217
CsGy3G015010Csa3G166240Cucumber (Chinese Long) v2cgybcuB109
CsGy3G015010MELO3C006706Melon (DHL92) v3.5.1cgybmeB200
CsGy3G015010ClCG05G006460Watermelon (Charleston Gray)cgybwcgB203
CsGy3G015010CSPI03G14900Wild cucumber (PI 183967)cgybcpiB110
CsGy3G015010CmaCh14G015950Cucurbita maxima (Rimu)cgybcmaB318
CsGy3G015010CmaCh06G015570Cucurbita maxima (Rimu)cgybcmaB427
CsGy3G015010Lsi05G015850Bottle gourd (USVL1VR-Ls)cgyblsiB184
CsGy3G015010Cp4.1LG03g11720Cucurbita pepo (Zucchini)cgybcpeB406
CsGy3G015010Cp4.1LG08g05130Cucurbita pepo (Zucchini)cgybcpeB454
CsGy3G015010Cla97C05G088090Watermelon (97103) v2cgybwmbB196
CsGy3G015010Bhi01G000773Wax gourdcgybwgoB257
CsGy3G015010Carg19630Silver-seed gourdcarcgybB0294
CsGy3G015010Carg23740Silver-seed gourdcarcgybB0939
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy3G015010Cucurbita maxima (Rimu)cgybcmaB345
CsGy3G015010Cucurbita maxima (Rimu)cgybcmaB454
CsGy3G015010Cucurbita moschata (Rifu)cgybcmoB290
CsGy3G015010Cucurbita moschata (Rifu)cgybcmoB317
CsGy3G015010Cucurbita moschata (Rifu)cgybcmoB401
CsGy3G015010Cucurbita moschata (Rifu)cgybcmoB421
CsGy3G015010Cucurbita pepo (Zucchini)cgybcpeB303
CsGy3G015010Cucurbita pepo (Zucchini)cgybcpeB348
CsGy3G015010Bottle gourd (USVL1VR-Ls)cgyblsiB136
CsGy3G015010Melon (DHL92) v3.5.1cgybmeB149
CsGy3G015010Melon (DHL92) v3.6.1cgybmedB148
CsGy3G015010Melon (DHL92) v3.6.1cgybmedB201
CsGy3G015010Watermelon (Charleston Gray)cgybwcgB230
CsGy3G015010Watermelon (97103) v1cgybwmB262
CsGy3G015010Silver-seed gourdcarcgybB0072
CsGy3G015010Silver-seed gourdcarcgybB0700
CsGy3G015010Cucumber (Chinese Long) v3cgybcucB117
CsGy3G015010Watermelon (97103) v2cgybwmbB222
CsGy3G015010Wax gourdcgybwgoB240