Carg19630 (gene) Silver-seed gourd

Overview
NameCarg19630
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionDNA-directed RNA polymerase subunit
LocationCucurbita_argyrosperma_scaffold_117 : 326440 .. 329576 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTACCATGAAGTTTTGTCGGGAATGGTATGTTTGGCTTTGATTCTTCTGTGTTGATTAGTTTAAGTCATTGGAAAATGTTGTAATTATGGAAATTGTTTTGTTGCAGTAACGACATTCTTTATCCGAAGGAGGACAGAGATGAGAAGATTCTTCTCTATGCGTGTCGCAACTGTGATCACCAGGTACCTTTTCTTTCTTTTGTTTTCCATATTTCTATTCTAATGCTATGAACATTTTAGGTTTATTAGTTTGGATTTCATGTCTGATGTATAATAGTTACACTTACAACTTACGAAACCCTATGTTATGGTTTTCTTTCTGTAGTTGAAATCAAATATCAATTTGTTTCTGAATGTGAATTGTCTTGCTTTATAGTAATTTTGACCTAGGATAAGGATGTTTGAACCTGATTCATGCTTATGCCCTCGAATGCTAGAAGTTGCCCCTTTAGTTCGTCTCCTTGTCAAAGATTTCCTTATAGCGTCATATTATCTCTGTTTTTAGCTTAACTTTCCCCGAACTTTGTGTTAGGACTACACGGGATAGAGAAGAGGCATTGACTAGAGGTTACTATATACAGTCGTTGTTATTTAGTATGATCATTTACTATGTTATTTAGTATGACCATATATAGTTACAAACCCTTTCCAAATTCCAAATTTTGCTGCATAAGATGTGCTGTTCAACTGACGTATAGAGGAATAGAGATCAGTTTCTTGAGACCAAATAGAGATATAGAGATCAGTTTCTTGAGACCTAAGTATATATCTAATTTTCGATTGGTGTTTGTACGTATATATCTCCATTTCCTTAATCTCCAAGGCTTTGTTGTCGGAGAGATACACCTTCCCGAAATTTTCAGATTTGAACTTCTGAAACCGTTCCTTATTTGAAGACAAATGAAAAGATGCATCCGAGTCTAAAATTCAAGATTAAGTTGGGCTATCCGCAGTAAGGGTTAGAGCATCTTCAGTATTTTCTGCGATATACACAATCATTATCATCTCTAGATTTGTGATGTTGCTTCTTCTCTAGTTTTGTACAATCTATTCAAAATTGTTTATTTTCTCAAAAATCTCTACACGTTATGTTTGGTCTGTTTGGAGATTTTTTTCAGTTTGATTTTTGATTGGTCGTGTTTATTTGGGCCCTTCAAGTTACTCCTTCCTTTTCGATCTAACACTAAGAGAATTGTTCGATGAATCCTCAATCTCTCGTTTGCGATTACTTTCACTAAGAACTAAATCTTGGATTTCATCAAACTTCAATTTCTCATATCCTTGGGGACTATTGTTTGGAATTACTTTCATTGAAAACTAAATCTTGGATTTCATCGAACTTCAATTTCTCAGATCCTTGGGGACTGTTGTTTGGAATTACTTTCATTGAAAACTAAATCTTGGATTTCATCAAAACTTCAACTTCTCAAATACTTGGGGACCGTTGATTGTAGTAACAACAATATCCCAAGACTTGGGTAAAGATGACATCAAAATCAATGTTTTAATTTCATCTTTGAAATTAATTAACATCAAATTTAGTTGACTTACAATCATATCGAATTCATTTATATGATCCACAAAAGATCCACCGCATCAAATACGCCTTTTTCATAGCCGACGGTTTTTTGTACATATTTGACAATGCCTTCAATAGATTCAACGTTGTATTCTCCTTGATAATGTTGAAAGTTACGTTTCTGAAAAGCGTCCATAGGATCAACCCTAGAGTTTTTCGATCCTTGAGCTTCCACTGCTCCATTGTCATGGTATCCGATTTCACCTCAAACAAGAATTCGTGAAGATCTTGCTGGTACATATTATCTTCAATCTGCATCTTCCCATAAATCGAAATAGGATCTATCATACTTCTCAATTCCAATCTTTTAGCTTTCCATCTTCACAGATCATGGTGAATATCTCCTAGTATTGATACCAATTATTAGGACCGCACATCAACCTACACACTCAGTCTAGATAAAGAACACGAAGAACAAAACATAGAAGACGAAAGGAGAAATATAGACTAGAGGTTTATATTGATGATGACTTCAATTATATAGTAATAGAATACATAAATTGTTAGGATAATTTCTTCCAACCATCACTTACAAGAATTTATATAGTTTAGTTTATTATGCATAGCTTTACTATATATAATCATTCGTACCTCTATGCAAAGCCATTTATTTACTACAAGTAAATCAGGGTCCAAAACCTAACATTTTGATGAAACCCTTTGTTCTTGGCTACTTTTGTTGTTCATTTTCATATAAATAAATTTCAGGAAGTGAAGATTTAAGAAGATTATAGTTTACTAGTTATCATCTGTTAATGAGAGCTAATAGACCCAACAGAGAATATACTTTTAGATAAATGCTTGAAACAGGCACATGTTTCATTTAATCTAACACAGGGAATTTAACCTTTCGTGGGATAGTTAATTCAGCCTTTATAAATTATTAGGACAATGTAGATTACTTATTTAATTCTGAAGGTTACAAGTTTGATCTATTTTTCATTGTTATTAGAGTATTATCATTGAATTGTCCAAGTTAATCTTCACGAGGGGCCTTTGATTCCCCTGTTCTTCTTTACCAACTGAATTACATTTCTTCTGTACTTCTACACTCGGTGTATGTTTTCTAATGGACCATTGTTGAATCTTCCTTTCTGTTTATGTATGATGTTGCTGCAGATCCAACTCTCCCTCGCACTAAAGCTGTCCGATGTGCTCAATGTAACCATGGAGAAGCTGTTTTCTTCCAGGTTATTATTATTATTTTGGATAGACTTCCCTTTTTGCTTCCAAGCTTTGTTTTGCAAGGCTTGAGCTTTCTAACTCTCTTCTCTCCATTACCAGCGTTGAGAGATTCTTTTCGAACTCCCATAATTTTTTAGCTGGCTCCGTTTTACATTCTCCATCATCTTCATCATCTTAATACGGCTGCAAATTGACCAGGTTTTCTTGAATTTAATCCTACTAACCATCATCTGATTGCGTTCACTGTCTGCAGGCCACTGCCAGAGGGGAGAAAGGTATGACATTGTTCTTCGTTTGCTGCAATCCAAATTGTGGCCAAAGATGGAGAGATTAACATCACCGAAATGCAATCCAAGTTTTATTAGCATG

mRNA sequence

ATGAGTACCATGAAGTTTTGTCGGGAATGTAACGACATTCTTTATCCGAAGGAGGACAGAGATGAGAAGATTCTTCTCTATGCGTGTCGCAACTGTGATCACCAGATCCAACTCTCCCTCGCACTAAAGCTGTCCGATGTGCTCAATGTAACCATGGAGAAGCTGTTTTCTTCCAGGCCACTGCCAGAGGGGAGAAAGGTATGACATTGTTCTTCGTTTGCTGCAATCCAAATTGTGGCCAAAGATGGAGAGATTAACATCACCGAAATGCAATCCAAGTTTTATTAGCATG

Coding sequence (CDS)

ATGAGTACCATGAAGTTTTGTCGGGAATGTAACGACATTCTTTATCCGAAGGAGGACAGAGATGAGAAGATTCTTCTCTATGCGTGTCGCAACTGTGATCACCAGATCCAACTCTCCCTCGCACTAAAGCTGTCCGATGTGCTCAATGTAACCATGGAGAAGCTGTTTTCTTCCAGGCCACTGCCAGAGGGGAGAAAGGTATGA

Protein sequence

MSTMKFCRECNDILYPKEDRDEKILLYACRNCDHQIQLSLALKLSDVLNVTMEKLFSSRPLPEGRKV
Homology
[Close]
BLAST of Carg19630 vs. NCBI nr
Match: XP_023895409.1 (DNA-directed RNA polymerases II, IV and V subunit 9A [Quercus suber])

HSP 1 Score: 80.9 bits (198), Expect = 1.8e-12
Identity = 36/42 (85.71%), Postives = 41/42 (97.62%), Query Frame = 0 

Query: 1  MSTMKFCRECNDILYPKEDRDEKILLYACRNCDHQIQLSLAL 43
          MSTMKFCRECN+ILYPKED+D+KILLYACRNCDHQ+ LSL+L
Sbjct: 1  MSTMKFCRECNNILYPKEDKDQKILLYACRNCDHQV-LSLSL 41

[Close]
BLAST of Carg19630 vs. NCBI nr
Match: XP_008438942.1 (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A [Cucumis melo] >XP_011651080.1 PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A [Cucumis sativus] >XP_022137993.1 DNA-directed RNA polymerases II, IV and V subunit 9A isoform X2 [Momordica charantia] >XP_022939240.1 DNA-directed RNA polymerases II, IV and V subunit 9A [Cucurbita moschata] >XP_022972305.1 DNA-directed RNA polymerases II, IV and V subunit 9A [Cucurbita maxima] >XP_022972306.1 DNA-directed RNA polymerases II, IV and V subunit 9A [Cucurbita maxima] >XP_023539282.1 DNA-directed RNA polymerases II, IV and V subunit 9A [Cucurbita pepo subsp. pepo] >XP_023539283.1 DNA-directed RNA polymerases II, IV and V subunit 9A [Cucurbita pepo subsp. pepo] >KGN57159.1 hypothetical protein Csa_3G166240 [Cucumis sativus])

HSP 1 Score: 80.5 bits (197), Expect = 2.4e-12
Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = 0 

Query: 1  MSTMKFCRECNDILYPKEDRDEKILLYACRNCDHQ 36
          MSTMKFCRECN+ILYPKEDRDEKILLYACRNCDHQ
Sbjct: 1  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQ 35

[Close]
BLAST of Carg19630 vs. NCBI nr
Match: XP_002976415.1 (DNA-directed RNA polymerases II, IV and V subunit 9A isoform X2 [Selaginella moellendorffii] >XP_002987251.1 DNA-directed RNA polymerases II, IV and V subunit 9A [Selaginella moellendorffii] >EFJ11827.1 hypothetical protein SELMODRAFT_125489 [Selaginella moellendorffii] >EFJ22675.1 hypothetical protein SELMODRAFT_232741 [Selaginella moellendorffii])

HSP 1 Score: 79.3 bits (194), Expect = 5.4e-12
Identity = 33/35 (94.29%), Postives = 35/35 (100.00%), Query Frame = 0 

Query: 1  MSTMKFCRECNDILYPKEDRDEKILLYACRNCDHQ 36
          MSTMKFCRECN+ILYPKEDRD+KILLYACRNCDHQ
Sbjct: 1  MSTMKFCRECNNILYPKEDRDQKILLYACRNCDHQ 35

[Close]
BLAST of Carg19630 vs. NCBI nr
Match: XP_007138997.1 (hypothetical protein PHAVU_009G256100g [Phaseolus vulgaris] >XP_014499177.1 DNA-directed RNA polymerases II, IV and V subunit 9A [Vigna radiata var. radiata] >XP_017409779.1 PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A [Vigna angularis] >ESW10991.1 hypothetical protein PHAVU_009G256100g [Phaseolus vulgaris] >KOM29149.1 hypothetical protein LR48_Vigan635s007400 [Vigna angularis] >BAT80344.1 hypothetical protein VIGAN_02334700 [Vigna angularis var. angularis])

HSP 1 Score: 79.3 bits (194), Expect = 5.4e-12
Identity = 33/35 (94.29%), Postives = 35/35 (100.00%), Query Frame = 0 

Query: 1  MSTMKFCRECNDILYPKEDRDEKILLYACRNCDHQ 36
          MSTMKFCRECN+ILYPKEDRD+KILLYACRNCDHQ
Sbjct: 1  MSTMKFCRECNNILYPKEDRDQKILLYACRNCDHQ 35

[Close]
BLAST of Carg19630 vs. NCBI nr
Match: XP_006664099.1 (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9B [Oryza brachyantha])

HSP 1 Score: 79.3 bits (194), Expect = 5.4e-12
Identity = 33/35 (94.29%), Postives = 35/35 (100.00%), Query Frame = 0 

Query: 1  MSTMKFCRECNDILYPKEDRDEKILLYACRNCDHQ 36
          MSTMKFCRECN+ILYPKEDRD+KILLYACRNCDHQ
Sbjct: 1  MSTMKFCRECNNILYPKEDRDQKILLYACRNCDHQ 35

[Close]
BLAST of Carg19630 vs. TAIR10
Match: AT3G16980.1 (RNA polymerases M/15 Kd subunit)

HSP 1 Score: 76.6 bits (187), Expect = 6.3e-15
Identity = 31/35 (88.57%), Postives = 35/35 (100.00%), Query Frame = 0 

Query: 1  MSTMKFCRECNDILYPKEDRDEKILLYACRNCDHQ 36
          MSTMKFCRECN+ILYPKED+++KILLYACRNCDHQ
Sbjct: 1  MSTMKFCRECNNILYPKEDKEQKILLYACRNCDHQ 35

[Close]
BLAST of Carg19630 vs. TAIR10
Match: AT4G16265.1 (RNA polymerases M/15 Kd subunit)

HSP 1 Score: 74.7 bits (182), Expect = 2.4e-14
Identity = 30/35 (85.71%), Postives = 34/35 (97.14%), Query Frame = 0 

Query: 1  MSTMKFCRECNDILYPKEDRDEKILLYACRNCDHQ 36
          MSTMKFCRECN+ILYPKED+++ ILLYACRNCDHQ
Sbjct: 1  MSTMKFCRECNNILYPKEDKEQSILLYACRNCDHQ 35

[Close]
BLAST of Carg19630 vs. Swiss-Prot
Match: sp|Q6NLH0|RPB9A_ARATH (DNA-directed RNA polymerases II, IV and V subunit 9A OS=Arabidopsis thaliana OX=3702 GN=NRPB9A PE=1 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.1e-13
Identity = 31/35 (88.57%), Postives = 35/35 (100.00%), Query Frame = 0 

Query: 1  MSTMKFCRECNDILYPKEDRDEKILLYACRNCDHQ 36
          MSTMKFCRECN+ILYPKED+++KILLYACRNCDHQ
Sbjct: 1  MSTMKFCRECNNILYPKEDKEQKILLYACRNCDHQ 35

[Close]
BLAST of Carg19630 vs. Swiss-Prot
Match: sp|Q8L5V0|RPB9B_ARATH (DNA-directed RNA polymerases II, IV and V subunit 9B OS=Arabidopsis thaliana OX=3702 GN=NRPB9B PE=1 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 4.3e-13
Identity = 30/35 (85.71%), Postives = 34/35 (97.14%), Query Frame = 0 

Query: 1  MSTMKFCRECNDILYPKEDRDEKILLYACRNCDHQ 36
          MSTMKFCRECN+ILYPKED+++ ILLYACRNCDHQ
Sbjct: 1  MSTMKFCRECNNILYPKEDKEQSILLYACRNCDHQ 35

[Close]
BLAST of Carg19630 vs. Swiss-Prot
Match: sp|Q32P73|RPB9_BOVIN (DNA-directed RNA polymerase II subunit RPB9 OS=Bos taurus OX=9913 GN=POLR2I PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 5.0e-09
Identity = 22/32 (68.75%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 4  MKFCRECNDILYPKEDRDEKILLYACRNCDHQ 36
          ++FC+ECN++LYPKED++ +ILLYACRNCD+Q
Sbjct: 14 IRFCQECNNMLYPKEDKENRILLYACRNCDYQ 45

[Close]
BLAST of Carg19630 vs. Swiss-Prot
Match: sp|P36954|RPB9_HUMAN (DNA-directed RNA polymerase II subunit RPB9 OS=Homo sapiens OX=9606 GN=POLR2I PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 5.0e-09
Identity = 22/32 (68.75%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 4  MKFCRECNDILYPKEDRDEKILLYACRNCDHQ 36
          ++FC+ECN++LYPKED++ +ILLYACRNCD+Q
Sbjct: 14 IRFCQECNNMLYPKEDKENRILLYACRNCDYQ 45

[Close]
BLAST of Carg19630 vs. Swiss-Prot
Match: sp|P60898|RPB9_MOUSE (DNA-directed RNA polymerase II subunit RPB9 OS=Mus musculus OX=10090 GN=Polr2i PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 5.0e-09
Identity = 22/32 (68.75%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 4  MKFCRECNDILYPKEDRDEKILLYACRNCDHQ 36
          ++FC+ECN++LYPKED++ +ILLYACRNCD+Q
Sbjct: 14 IRFCQECNNMLYPKEDKENRILLYACRNCDYQ 45

[Close]
BLAST of Carg19630 vs. TrEMBL
Match: tr|A0A1S3AY93|A0A1S3AY93_CUCME (DNA-directed RNA polymerase subunit OS=Cucumis melo OX=3656 GN=LOC103483886 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.6e-12
Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = 0 

Query: 1  MSTMKFCRECNDILYPKEDRDEKILLYACRNCDHQ 36
          MSTMKFCRECN+ILYPKEDRDEKILLYACRNCDHQ
Sbjct: 1  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQ 35

[Close]
BLAST of Carg19630 vs. TrEMBL
Match: tr|A0A0A0L816|A0A0A0L816_CUCSA (DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 GN=Csa_3G166240 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.6e-12
Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = 0 

Query: 1  MSTMKFCRECNDILYPKEDRDEKILLYACRNCDHQ 36
          MSTMKFCRECN+ILYPKEDRDEKILLYACRNCDHQ
Sbjct: 1  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQ 35

[Close]
BLAST of Carg19630 vs. TrEMBL
Match: tr|Q2QNM4|Q2QNM4_ORYSJ (DNA-directed RNA polymerase subunit OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os12g37370 PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 3.6e-12
Identity = 33/35 (94.29%), Postives = 35/35 (100.00%), Query Frame = 0 

Query: 1  MSTMKFCRECNDILYPKEDRDEKILLYACRNCDHQ 36
          MSTMKFCRECN+ILYPKEDRD+KILLYACRNCDHQ
Sbjct: 1  MSTMKFCRECNNILYPKEDRDQKILLYACRNCDHQ 35

[Close]
BLAST of Carg19630 vs. TrEMBL
Match: tr|I1R770|I1R770_ORYGL (DNA-directed RNA polymerase subunit OS=Oryza glaberrima OX=4538 PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 3.6e-12
Identity = 33/35 (94.29%), Postives = 35/35 (100.00%), Query Frame = 0 

Query: 1  MSTMKFCRECNDILYPKEDRDEKILLYACRNCDHQ 36
          MSTMKFCRECN+ILYPKEDRD+KILLYACRNCDHQ
Sbjct: 1  MSTMKFCRECNNILYPKEDRDQKILLYACRNCDHQ 35

[Close]
BLAST of Carg19630 vs. TrEMBL
Match: tr|A0A0D9Y0C2|A0A0D9Y0C2_9ORYZ (DNA-directed RNA polymerase subunit OS=Leersia perrieri OX=77586 PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 3.6e-12
Identity = 33/35 (94.29%), Postives = 35/35 (100.00%), Query Frame = 0 

Query: 1  MSTMKFCRECNDILYPKEDRDEKILLYACRNCDHQ 36
          MSTMKFCRECN+ILYPKEDRD+KILLYACRNCDHQ
Sbjct: 1  MSTMKFCRECNNILYPKEDRDQKILLYACRNCDHQ 35

The following BLAST results are available for this feature:
BLAST of Carg19630 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023895409.11.8e-1285.71DNA-directed RNA polymerases II, IV and V subunit 9A [Quercus suber][more]
XP_008438942.12.4e-1297.14PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A [Cucumis melo] >... [more]
XP_002976415.15.4e-1294.29DNA-directed RNA polymerases II, IV and V subunit 9A isoform X2 [Selaginella moe... [more]
XP_007138997.15.4e-1294.29hypothetical protein PHAVU_009G256100g [Phaseolus vulgaris] >XP_014499177.1 DNA-... [more]
XP_006664099.15.4e-1294.29PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9B [Oryza brachyant... [more]
BLAST of Carg19630 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G16980.16.3e-1588.57RNA polymerases M/15 Kd subunit[more]
AT4G16265.12.4e-1485.71RNA polymerases M/15 Kd subunit[more]
BLAST of Carg19630 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q6NLH0|RPB9A_ARATH1.1e-1388.57DNA-directed RNA polymerases II, IV and V subunit 9A OS=Arabidopsis thaliana OX=... [more]
sp|Q8L5V0|RPB9B_ARATH4.3e-1385.71DNA-directed RNA polymerases II, IV and V subunit 9B OS=Arabidopsis thaliana OX=... [more]
sp|Q32P73|RPB9_BOVIN5.0e-0968.75DNA-directed RNA polymerase II subunit RPB9 OS=Bos taurus OX=9913 GN=POLR2I PE=1... [more]
sp|P36954|RPB9_HUMAN5.0e-0968.75DNA-directed RNA polymerase II subunit RPB9 OS=Homo sapiens OX=9606 GN=POLR2I PE... [more]
sp|P60898|RPB9_MOUSE5.0e-0968.75DNA-directed RNA polymerase II subunit RPB9 OS=Mus musculus OX=10090 GN=Polr2i P... [more]
BLAST of Carg19630 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3AY93|A0A1S3AY93_CUCME1.6e-1297.14DNA-directed RNA polymerase subunit OS=Cucumis melo OX=3656 GN=LOC103483886 PE=3... [more]
tr|A0A0A0L816|A0A0A0L816_CUCSA1.6e-1297.14DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 GN=Csa_3G166240 P... [more]
tr|Q2QNM4|Q2QNM4_ORYSJ3.6e-1294.29DNA-directed RNA polymerase subunit OS=Oryza sativa subsp. japonica OX=39947 GN=... [more]
tr|I1R770|I1R770_ORYGL3.6e-1294.29DNA-directed RNA polymerase subunit OS=Oryza glaberrima OX=4538 PE=3 SV=1[more]
tr|A0A0D9Y0C2|A0A0D9Y0C2_9ORYZ3.6e-1294.29DNA-directed RNA polymerase subunit OS=Leersia perrieri OX=77586 PE=3 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR019761DNA-dir_RNA_pol-M_15_CS
IPR001529DNA-dir_RNA_pol_M/15kDasu
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg19630-RACarg19630-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001529DNA-directed RNA polymerase, M/15kDa subunitSMARTSM00661rpol9cneucoord: 5..58
e-value: 7.8E-7
score: 38.7
IPR001529DNA-directed RNA polymerase, M/15kDa subunitPFAMPF02150RNA_POL_M_15KDcoord: 4..33
e-value: 5.8E-11
score: 42.0
NoneNo IPR availableGENE3DG3DSA:2.20.25.10coord: 1..39
e-value: 2.8E-20
score: 73.4
NoneNo IPR availablePANTHERPTHR11239:SF15SUBFAMILY NOT NAMEDcoord: 1..35
NoneNo IPR availablePANTHERPTHR11239DNA-DIRECTED RNA POLYMERASEcoord: 1..35
NoneNo IPR availableSUPERFAMILYSSF57783Zinc beta-ribboncoord: 1..37
IPR019761DNA-directed RNA polymerase M, 15kDa subunit, conserved sitePROSITEPS01030RNA_POL_M_15KDcoord: 6..32

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg19630Cla021782Watermelon (97103) v1carwmB0269
Carg19630Csa3G166240Cucumber (Chinese Long) v2carcuB0306
Carg19630MELO3C006706Melon (DHL92) v3.5.1carmeB0280
Carg19630ClCG05G006460Watermelon (Charleston Gray)carwcgB0271
Carg19630CSPI03G14900Wild cucumber (PI 183967)carcpiB0310
Carg19630Cucsa.252620Cucumber (Gy14) v1carcgyB0329
Carg19630CmaCh06G015570Cucurbita maxima (Rimu)carcmaB0393
Carg19630Lsi05G015850Bottle gourd (USVL1VR-Ls)carlsiB254
Carg19630Cp4.1LG08g05130Cucurbita pepo (Zucchini)carcpeB0396
Carg19630Cp4.1LG03g11720Cucurbita pepo (Zucchini)carcpeB0395
Carg19630CsGy3G015010Cucumber (Gy14) v2carcgybB0294
Carg19630Cla97C05G088090Watermelon (97103) v2carwmbB0287
Carg19630Bhi01G000773Wax gourdcarwgoB0365
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg19630Carg23740Silver-seed gourdcarcarB318
The following block(s) are covering this gene:
GeneOrganismBlock
Carg19630Silver-seed gourdcarcarB079
Carg19630Silver-seed gourdcarcarB316
Carg19630Cucurbita maxima (Rimu)carcmaB0391
Carg19630Cucurbita maxima (Rimu)carcmaB0392
Carg19630Cucurbita maxima (Rimu)carcmaB0394
Carg19630Cucurbita moschata (Rifu)carcmoB0388
Carg19630Cucurbita moschata (Rifu)carcmoB0389
Carg19630Cucurbita moschata (Rifu)carcmoB0390
Carg19630Cucurbita moschata (Rifu)carcmoB0391
Carg19630Cucurbita pepo (Zucchini)carcpeB0393
Carg19630Cucurbita pepo (Zucchini)carcpeB0394
Carg19630Cucumber (Chinese Long) v3carcucB0309
Carg19630Bottle gourd (USVL1VR-Ls)carlsiB252
Carg19630Melon (DHL92) v3.5.1carmeB0279
Carg19630Melon (DHL92) v3.6.1carmedB0291
Carg19630Melon (DHL92) v3.6.1carmedB0292
Carg19630Watermelon (Charleston Gray)carwcgB0272
Carg19630Watermelon (97103) v1carwmB0270
Carg19630Watermelon (97103) v2carwmbB0288
Carg19630Wax gourdcarwgoB0364