Cp4.1LG08g05130.1 (mRNA) Cucurbita pepo (Zucchini)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CCATTTACAAGAACTGTAAGCAGTCAAAGTTCACTTTCTCCCGCCAATGGAAGAAAACTCTTCTCTTTCGCCTGATCGACGTTTCTAGAACCGCAGCCGATTACGGATAGATGCGCTAGCTGAGCATTCCAGTGATTCCACTCCTCAAATTCTTTCTTTCTGTTGAATATAGCGTTTGATTTTTGCGCAGATTCCTTCTGATTTTCAGCTGAACAGCTGCTAAAACCCTAGCTGAAAGTTGATCTGTATTAGTTCAGGGTTTCTTGTTTTTCCATCTTCTGCAAGATGAGTACCATGAAGTTTTGCCGGGAATGGTATGTGTTAGAGTTTAATGTCGCATATGACTCTTGTTCTTCTGCGTTGATTAGTTTAAGTTGTTGAAAAATGTTGAGAATATGGAAATTCTTATTTTGCAGTAACAACATTCTCTATCCGAAGGAGGATAGGGATGAGAAGATTCTTCTCTATGCGTGTCGCAACTGTGATCACCAGGTAACCTTCTCCTTCTTTTCATTTCAACTTTCTATTCTAACTTCGTGAACGTTTTAGGTTTATTAGTTAGTCTTTCATTTCTAATGTAATAGTTTACGACTTACGAGTACGATGTTCTCTCTATATATTTGTCGGGTCTCTGGTGAAACCTTTAGCTATCGTTTTGTAGTTCAAATCAAATATCATTCTGCTTCTGGATGTGAGTTGCCCTACTTTATAGTAATTTTAACCTAGGACAACGATATTTGGTTCTGATTCGTGATTATGCCTTCAGATACTCAAGGTTGTCACTTTCACTCGTCACCCTGTTAAGTGTTCCTGTCGTCTTATCATCTCTGTTGTTAGCTTACCCTTCTCTGAATTTGAAGGACATACTATCCCATTGTTCTTGGTTGCTTTTGTAGTTCATTTCGGTATAATAGTTTTCAGGAAGGAACAATGTAAGAAGATTATGATTTAACTAATTCTCATCTTTTGATGACATGTCAACGGGTCCATTACAGTTCTTAGTTGGAGATATGCATGTACATCAGTATAAATATAGATCTAGACAAATGCTAGAAACAGCTACTCGTTTCATTTAATCTAGGTGAGGGAATATAACTTCTGTGCTGACGGTTAATTCAGCCTTTATAAAATTATTAGGATAGTATTACTAATTTAATTCTGAACGATGCAAGTTTGGGCCATTCTTTAGTTGATATTAGTGTTAACTCACTCCCTTAGGTCGTGGAATCGTTAAAGTTAATCTTCACGGATGGCTTTTGATTTCCTGGTTCTTTTGAATTTATTTGGGTTCTGAAATTCTTTACTAATTGAGTTGCATATTTTCTCTACCTCTAGTCAATGTATGTTTTCCTGATGGATCGTTGTTGGAAACTTCCTTTCTATTTTCTTGTAGCCGAGTAGCTTTTATTTTTGCCTACTGGAAGATAGACCTGTATCTGTACACTGAAATCAATATCCTCCCTTCTTTTCTTCTGATTCGACTTACTGATACTCCCTTCCATGTATTGACATGTTTTAATTTCTAGGACTTGATGGTTTCCTTCCCCCTTATTCTGACCATTAATTCTCATGTTTTGTTTTAAATTTCTGTTTGCAGGAAGTTGCTGACAATAACTGTGTCTATAGGAATGAGATTCATCACGCCGTAGGGGAACGCACTCAAGTTCTGCAAGATGTTGCTGCGGATCCAACACTCCCTCGCACAAAAGCTGTCCGATGTGCTCAATGCAACCATGGAGAAGCTGTTTTCTTCCAGGTTCACTTCCTTTTTATTTCCTAACTCTGTGTTGCTAGGCTTGAGCTTTCTTCTTCCCTCTCTTGATTTCATCAGTGTTACATTTTCCAACCCAAGCTTCATTCGTTCTTAACTCCCAAAAGTTGTAGTTTGTTCTAAATTACATGCCACATCATTATCTTAATTGGGCTGTGAATACCGCCGGTAAGGTTTTCTTGAATGAAATGTGAACAGTCTTCTTTTGTTGGATTTTTGTAGGCTGCTAGAGGTTACCAATTTTGATTTGCATCATTTCATCATGTTCATACTTATATCTAGCCATGATCTCATTGCATAATTTTATGCAGGCCACTGCCAGAGGGGAGGAAGGTATGACATTATTCTTCGTTTGCTGCAATCCAAATTGTGGCCACAGGTGGAGAGATTGATGTCAAATATGTGCTGAACATATGTTTACTTCATTGACTCTTGGTATGTCATCAAGTGTTTTAACAATCTTATGCTTAAAGACGTCTTTTTTGGCATGGGGTGTACAATTGTACTGATTGTCAATGTGGGTTGATGAGGACCACGAACTTCAACTAAGTCTTATTTTATAGATCTTAATTTTTATGAAGATTTCATCATTACCATAAAGTTTTGATATTTATTGAACCCTTTGTCTATGGACATACTAAAAGAATATTGAACAAAAAGATTGGTCTAAATTTGTAGGCATCAACCACCGGAGCAATTGGGAGTGCTGAATACTGATTTTTCATTTGTTATTGCTGTGGATGTGAAAGATAAAGAGTATTGTATACACAAATGAATCCGGGTGAAAGATGCTTTCCCTCTCTAATTTCCTAAAGGATTTGAATGAAAGGCATTGATTTGATCAAATAGGGAAAAAGAATTATCTACAATCAAGATAAATAGCCAAAGTGAGCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTTCTTCAACCTAACATTGGCCAATAATTTCTACCAAAATTCTTAGAATGCTAAGAGGCGTATTGTACAAGAATCTACAAAGGTGATACGTTGCGACTAAACCAGTCCGACAATCGTCTAATTTTCTTCGACATGTCTTCATTCTTTGCCACGAATGACTCGAAATTTGATAGCATTACCATGAAGTCGTGCTTCAATGCTTCCAAGCTTCGGTAGTAATCATTCTGTAATCTTTCCTGGATTATCTCAAGGCACAATGGTACAGGAAACCTATACATACATGTACAAAAGGCCAAAATTACATTCGAATACCGTATATACGGGTCTAGGGAGTTAAGTTTCTCGGAAGATGGATCAAGAAATTGATAGCAAATGGATTCATGAAAGTACCTGTTCTTGTATTGTGTCTTTCGTGCGAGAAGCATCAAATCTTGAATCCCGTAACGACCCTGAGATTTGAAGGACAACATCAGGTTATACCCATTCAAAAGGATATAAACAGAAAACATAATAACCTTGAAGAAGCAGACTACCTGCATAGAAGTCGACGTTAATTGGTCGAAGGCAGTTAACAACTTCGCTTTGTTTTCGTCGTCTATTCGAGGCTGATCCCACTGAGTAACAGTATCATACAGCTCCCAAGGACTATGTAAATGTGGTTCTGCAGGATCACTCCTATACTTAATTGTGTACCTCTCCCAAGGACTTTCTGGATACTCCAAAGATTTTGCCTGCACGGAGACAATCCGACCATCCCACCAACTACCATCTACTCCGACGTCGTTTTTCCACCACACTTTGCACTTATCCCTGAATGTCCAATTCCTCTGCATTGCCGCTTCAAACCGAGTTCTTTCGACTAAGAAGTCGGGGAAACTAGTCAACTCGGGCAGAGTTAACTTCAAAGATTGGAGGTATACATGGGAAGTAGGATCTATGAACTTGAGTAGCATTTTACAGCAACTATCTCCAGAACCTGCAGAAGTAGAATAAACAAGCTCGACAACCTTACAGAACTCAACCGCTCGTACAGGTCCCCGGATTGAGGTCCAAGGTCCGGTGTCTTTTGTGTGATAGTAATTTGTACAACAGTGATCTATGTAT CCATTTACAAGAACTGTAAGCAGTCAAAGTTCACTTTCTCCCGCCAATGGAAGAAAACTCTTCTCTTTCGCCTGATCGACGTTTCTAGAACCGCAGCCGATTACGGATAGATGCGCTAGCTGAGCATTCCAGTGATTCCACTCCTCAAATTCTTTCTTTCTGTTGAATATAGCGTTTGATTTTTGCGCAGATTCCTTCTGATTTTCAGCTGAACAGCTGCTAAAACCCTAGCTGAAAGTTGATCTGTATTAGTTCAGGGTTTCTTGTTTTTCCATCTTCTGCAAGATGAGTACCATGAAGTTTTGCCGGGAATGTAACAACATTCTCTATCCGAAGGAGGATAGGGATGAGAAGATTCTTCTCTATGCGTGTCGCAACTGTGATCACCAGATACTCAAGGTTGTCACTTTCACTCGTCACCCTGTTAAGTGTTCCTGTCGTCTTATCATCTCTGTTGTTAGCTTACCCTTCTCTGAATTTGAAGGACATACTATCCCATTGTTCTTGGTTGCTTTTGTAGTTCATTTCGGTATAATAGTTTTCAGGAAGGAACAATTCAATGTATGTTTTCCTGATGGATCGTTGTTGGAAACTTCCTTTCTATTTTCTTGTAGCCGAGTAGCTTTTATTTTTGCCTACTGGAAGATAGACCTGTATCTGTACACTGAAATCAATATCCTCCCTTCTTTTCTTCTGATTCGACTTACTGATACTCCCTTCCATGAAGTTGCTGACAATAACTGTGTCTATAGGAATGAGATTCATCACGCCGTAGGGGAACGCACTCAAGTTCTGCAAGATGTTGCTGCGGATCCAACACTCCCTCGCACAAAAGCTGTCCGATGTGCTCAATGCAACCATGGAGAAGCTGTTTTCTTCCAGGCCACTGCCAGAGGGGAGGAAGGTATGACATTATTCTTCGTTTGCTGCAATCCAAATTGTGGCCACAGGTGGAGAGATTGATGTCAAATATGTGCTGAACATATGTTTACTTCATTGACTCTTGGTATGTCATCAAGTGTTTTAACAATCTTATGCTTAAAGACGTCTTTTTTGGCATGGGGTGTACAATTGTACTGATTGTCAATGTGGGTTGATGAGGACCACGAACTTCAACTAAGTCTTATTTTATAGATCTTAATTTTTATGAAGATTTCATCATTACCATAAAGTTTTGATATTTATTGAACCCTTTGTCTATGGACATACTAAAAGAATATTGAACAAAAAGATTGGTCTAAATTTGTAGGCATCAACCACCGGAGCAATTGGGAGTGCTGAATACTGATTTTTCATTTGTTATTGCTGTGGATGTGAAAGATAAAGAGTATTGTATACACAAATGAATCCGGGTGAAAGATGCTTTCCCTCTCTAATTTCCTAAAGGATTTGAATGAAAGGCATTGATTTGATCAAATAGGGAAAAAGAATTATCTACAATCAAGATAAATAGCCAAAGTGAGCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTTCTTCAACCTAACATTGGCCAATAATTTCTACCAAAATTCTTAGAATGCTAAGAGGCGTATTGTACAAGAATCTACAAAGGTGATACGTTGCGACTAAACCAGTCCGACAATCGTCTAATTTTCTTCGACATGTCTTCATTCTTTGCCACGAATGACTCGAAATTTGATAGCATTACCATGAAGTCGTGCTTCAATGCTTCCAAGCTTCGGTAGTAATCATTCTGTAATCTTTCCTGGATTATCTCAAGGCACAATGGTACAGGAAACCTATACATACATGTACAAAAGGCCAAAATTACATTCGAATACCGTATATACGGGTCTAGGGAGTTAAGTTTCTCGGAAGATGGATCAAGAAATTGATAGCAAATGGATTCATGAAAGTACCTGTTCTTGTATTGTGTCTTTCGTGCGAGAAGCATCAAATCTTGAATCCCGTAACGACCCTGAGATTTGAAGGACAACATCAGGTTATACCCATTCAAAAGGATATAAACAGAAAACATAATAACCTTGAAGAAGCAGACTACCTGCATAGAAGTCGACGTTAATTGGTCGAAGGCAGTTAACAACTTCGCTTTGTTTTCGTCGTCTATTCGAGGCTGATCCCACTGAGTAACAGTATCATACAGCTCCCAAGGACTATGTAAATGTGGTTCTGCAGGATCACTCCTATACTTAATTGTGTACCTCTCCCAAGGACTTTCTGGATACTCCAAAGATTTTGCCTGCACGGAGACAATCCGACCATCCCACCAACTACCATCTACTCCGACGTCGTTTTTCCACCACACTTTGCACTTATCCCTGAATGTCCAATTCCTCTGCATTGCCGCTTCAAACCGAGTTCTTTCGACTAAGAAGTCGGGGAAACTAGTCAACTCGGGCAGAGTTAACTTCAAAGATTGGAGGTATACATGGGAAGTAGGATCTATGAACTTGAGTAGCATTTTACAGCAACTATCTCCAGAACCTGCAGAAGTAGAATAAACAAGCTCGACAACCTTACAGAACTCAACCGCTCGTACAGGTCCCCGGATTGAGGTCCAAGGTCCGGTGTCTTTTGTGTGATAGTAATTTGTACAACAGTGATCTATGTAT ATGAGTACCATGAAGTTTTGCCGGGAATGTAACAACATTCTCTATCCGAAGGAGGATAGGGATGAGAAGATTCTTCTCTATGCGTGTCGCAACTGTGATCACCAGATACTCAAGGTTGTCACTTTCACTCGTCACCCTGTTAAGTGTTCCTGTCGTCTTATCATCTCTGTTGTTAGCTTACCCTTCTCTGAATTTGAAGGACATACTATCCCATTGTTCTTGGTTGCTTTTGTAGTTCATTTCGGTATAATAGTTTTCAGGAAGGAACAATTCAATGTATGTTTTCCTGATGGATCGTTGTTGGAAACTTCCTTTCTATTTTCTTGTAGCCGAGTAGCTTTTATTTTTGCCTACTGGAAGATAGACCTGTATCTGTACACTGAAATCAATATCCTCCCTTCTTTTCTTCTGATTCGACTTACTGATACTCCCTTCCATGAAGTTGCTGACAATAACTGTGTCTATAGGAATGAGATTCATCACGCCGTAGGGGAACGCACTCAAGTTCTGCAAGATGTTGCTGCGGATCCAACACTCCCTCGCACAAAAGCTGTCCGATGTGCTCAATGCAACCATGGAGAAGCTGTTTTCTTCCAGGCCACTGCCAGAGGGGAGGAAGGTATGACATTATTCTTCGTTTGCTGCAATCCAAATTGTGGCCACAGGTGGAGAGATTGA MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQILKVVTFTRHPVKCSCRLIISVVSLPFSEFEGHTIPLFLVAFVVHFGIIVFRKEQFNVCFPDGSLLETSFLFSCSRVAFIFAYWKIDLYLYTEINILPSFLLIRLTDTPFHEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD
BLAST of Cp4.1LG08g05130.1 vs. Swiss-Prot
Match: RPB9B_ARATH (DNA-directed RNA polymerases II, IV and V subunit 9B OS=Arabidopsis thaliana GN=NRPB9B PE=1 SV=1) HSP 1 Score: 161.8 bits (408), Expect = 8.9e-39 Identity = 72/101 (71.29%), Postives = 82/101 (81.19%), Query Frame = 1
BLAST of Cp4.1LG08g05130.1 vs. Swiss-Prot
Match: RPB9A_ARATH (DNA-directed RNA polymerases II, IV and V subunit 9A OS=Arabidopsis thaliana GN=NRPB9A PE=1 SV=1) HSP 1 Score: 159.1 bits (401), Expect = 5.8e-38 Identity = 71/101 (70.30%), Postives = 82/101 (81.19%), Query Frame = 1
BLAST of Cp4.1LG08g05130.1 vs. Swiss-Prot
Match: RPB9_BOVIN (DNA-directed RNA polymerase II subunit RPB9 OS=Bos taurus GN=POLR2I PE=1 SV=1) HSP 1 Score: 103.2 bits (256), Expect = 3.8e-21 Identity = 45/91 (49.45%), Postives = 63/91 (69.23%), Query Frame = 1
BLAST of Cp4.1LG08g05130.1 vs. Swiss-Prot
Match: RPB9_HUMAN (DNA-directed RNA polymerase II subunit RPB9 OS=Homo sapiens GN=POLR2I PE=1 SV=1) HSP 1 Score: 103.2 bits (256), Expect = 3.8e-21 Identity = 45/91 (49.45%), Postives = 63/91 (69.23%), Query Frame = 1
BLAST of Cp4.1LG08g05130.1 vs. Swiss-Prot
Match: RPB9_MOUSE (DNA-directed RNA polymerase II subunit RPB9 OS=Mus musculus GN=Polr2i PE=1 SV=1) HSP 1 Score: 103.2 bits (256), Expect = 3.8e-21 Identity = 45/91 (49.45%), Postives = 63/91 (69.23%), Query Frame = 1
BLAST of Cp4.1LG08g05130.1 vs. TrEMBL
Match: A0A067JYM8_JATCU (DNA-directed RNA polymerase subunit OS=Jatropha curcas GN=JCGZ_18978 PE=3 SV=1) HSP 1 Score: 210.3 bits (534), Expect = 2.4e-51 Identity = 125/257 (48.64%), Postives = 148/257 (57.59%), Query Frame = 1
BLAST of Cp4.1LG08g05130.1 vs. TrEMBL
Match: A0A0A0L816_CUCSA (DNA-directed RNA polymerase subunit OS=Cucumis sativus GN=Csa_3G166240 PE=3 SV=1) HSP 1 Score: 177.9 bits (450), Expect = 1.3e-41 Identity = 83/101 (82.18%), Postives = 86/101 (85.15%), Query Frame = 1
BLAST of Cp4.1LG08g05130.1 vs. TrEMBL
Match: W9QW59_9ROSA (DNA-directed RNA polymerase subunit OS=Morus notabilis GN=L484_007725 PE=3 SV=1) HSP 1 Score: 175.6 bits (444), Expect = 6.6e-41 Identity = 81/101 (80.20%), Postives = 86/101 (85.15%), Query Frame = 1
BLAST of Cp4.1LG08g05130.1 vs. TrEMBL
Match: A0A103XBI1_CYNCS (DNA-directed RNA polymerase subunit OS=Cynara cardunculus var. scolymus GN=Ccrd_025042 PE=3 SV=1) HSP 1 Score: 175.6 bits (444), Expect = 6.6e-41 Identity = 82/101 (81.19%), Postives = 85/101 (84.16%), Query Frame = 1
BLAST of Cp4.1LG08g05130.1 vs. TrEMBL
Match: A0A103XGC5_CYNCS (Zinc finger, TFIIS-type OS=Cynara cardunculus var. scolymus GN=Ccrd_007770 PE=4 SV=1) HSP 1 Score: 173.7 bits (439), Expect = 2.5e-40 Identity = 77/79 (97.47%), Postives = 77/79 (97.47%), Query Frame = 1
BLAST of Cp4.1LG08g05130.1 vs. TAIR10
Match: AT4G16265.1 (AT4G16265.1 RNA polymerases M/15 Kd subunit) HSP 1 Score: 161.8 bits (408), Expect = 5.0e-40 Identity = 72/101 (71.29%), Postives = 82/101 (81.19%), Query Frame = 1
BLAST of Cp4.1LG08g05130.1 vs. TAIR10
Match: AT3G16980.1 (AT3G16980.1 RNA polymerases M/15 Kd subunit) HSP 1 Score: 159.1 bits (401), Expect = 3.3e-39 Identity = 71/101 (70.30%), Postives = 82/101 (81.19%), Query Frame = 1
BLAST of Cp4.1LG08g05130.1 vs. NCBI nr
Match: gi|643716125|gb|KDP27898.1| (hypothetical protein JCGZ_18978 [Jatropha curcas]) HSP 1 Score: 210.3 bits (534), Expect = 3.5e-51 Identity = 125/257 (48.64%), Postives = 148/257 (57.59%), Query Frame = 1
BLAST of Cp4.1LG08g05130.1 vs. NCBI nr
Match: gi|659076932|ref|XP_008438942.1| (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A [Cucumis melo]) HSP 1 Score: 177.9 bits (450), Expect = 1.9e-41 Identity = 83/101 (82.18%), Postives = 86/101 (85.15%), Query Frame = 1
BLAST of Cp4.1LG08g05130.1 vs. NCBI nr
Match: gi|976898897|gb|KVH87674.1| (DNA-directed RNA polymerase, M/15kDa subunit [Cynara cardunculus var. scolymus]) HSP 1 Score: 175.6 bits (444), Expect = 9.5e-41 Identity = 82/101 (81.19%), Postives = 85/101 (84.16%), Query Frame = 1
BLAST of Cp4.1LG08g05130.1 vs. NCBI nr
Match: gi|703091293|ref|XP_010094310.1| (DNA-directed RNA polymerase II subunit [Morus notabilis]) HSP 1 Score: 175.6 bits (444), Expect = 9.5e-41 Identity = 81/101 (80.20%), Postives = 86/101 (85.15%), Query Frame = 1
BLAST of Cp4.1LG08g05130.1 vs. NCBI nr
Match: gi|720038529|ref|XP_010268008.1| (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A [Nelumbo nucifera]) HSP 1 Score: 174.9 bits (442), Expect = 1.6e-40 Identity = 80/101 (79.21%), Postives = 86/101 (85.15%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
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