Cp4.1LG01g23500 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g23500
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	At5g14410
Location	Cp4.1LG01 : 19524583 .. 19525002 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGGACCTCGACACCACCGCGGCGCCAGGCAAGTTCCGGTACCGGAGGCTGAGATACAGCGAGGAATTTGAGGAGGCGTTTGGAAGATCGAGAGGAGGAGAAGAGAGGAGGAGGAGATTCGTCGGAAGATCGAAGCGGTGGTTCAGAATCAGAAGGGCTTCGATTGGGAGGAGGTTGAAGAAGCTCAGAGTTCCAAGCCTGAGAAAGCTGTTGAGAAGGAAATCGCGGCTGGTGACGGCCATGAGAGGCTCGATTGCGAAGGTTGTGAAGAGGTTTAGGGAAGGGGAAGCGTATTTGGGGGATCTTTTTGCTGGAAATTATTTGTTTCTTCAGGTGAATCCCAGCTCCATCAAATGCCATAAAAATCACCATTCTGCCCTTCAAAATTTCGCCCCAACTTATTCCCTCAACCTCTAA

mRNA sequence

ATGCCGGACCTCGACACCACCGCGGCGCCAGGCAAGTTCCGGTACCGGAGGCTGAGATACAGCGAGGAATTTGAGGAGGCGTTTGGAAGATCGAGAGGAGGAGAAGAGAGGAGGAGGAGATTCGTCGGAAGATCGAAGCGGTGGTTCAGAATCAGAAGGGCTTCGATTGGGAGGAGGTTGAAGAAGCTCAGAGTTCCAAGCCTGAGAAAGCTGTTGAGAAGGAAATCGCGGCTGGTGACGGCCATGAGAGGCTCGATTGCGAAGGTTGTGAAGAGGTTTAGGGAAGGGGAAGCGTATTTGGGGGATCTTTTTGCTGGAAATTATTTGTTTCTTCAGGTGAATCCCAGCTCCATCAAATGCCATAAAAATCACCATTCTGCCCTTCAAAATTTCGCCCCAACTTATTCCCTCAACCTCTAA

Coding sequence (CDS)

ATGCCGGACCTCGACACCACCGCGGCGCCAGGCAAGTTCCGGTACCGGAGGCTGAGATACAGCGAGGAATTTGAGGAGGCGTTTGGAAGATCGAGAGGAGGAGAAGAGAGGAGGAGGAGATTCGTCGGAAGATCGAAGCGGTGGTTCAGAATCAGAAGGGCTTCGATTGGGAGGAGGTTGAAGAAGCTCAGAGTTCCAAGCCTGAGAAAGCTGTTGAGAAGGAAATCGCGGCTGGTGACGGCCATGAGAGGCTCGATTGCGAAGGTTGTGAAGAGGTTTAGGGAAGGGGAAGCGTATTTGGGGGATCTTTTTGCTGGAAATTATTTGTTTCTTCAGGTGAATCCCAGCTCCATCAAATGCCATAAAAATCACCATTCTGCCCTTCAAAATTTCGCCCCAACTTATTCCCTCAACCTCTAA

Protein sequence

MPDLDTTAAPGKFRYRRLRYSEEFEEAFGRSRGGEERRRRFVGRSKRWFRIRRASIGRRLKKLRVPSLRKLLRRKSRLVTAMRGSIAKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIKCHKNHHSALQNFAPTYSLNL

Homology

[Close]

BLAST of Cp4.1LG01g23500 vs. TrEMBL
Match: A0A0A0KSD1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G517900 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 2.8e-42
Identity = 109/152 (71.71%), Postives = 118/152 (77.63%), Query Frame = 1


Query: 1   MPDLDTTAAPGKFRYRRLRYSEEFEEAFGRSR--GGEERRRRFVGRSKRWFRIRRA---- 60
           M DL+T +A GKFRYRRLRYSEEFEEAFGRSR  GGE  R+R+  R + WFR+R      
Sbjct: 1   MADLETASA-GKFRYRRLRYSEEFEEAFGRSREGGGEGIRKRW-RRRRWWFRMRMRKGSS 60

Query: 61  --SIGRRLKKLRVPSLRKLLRRKSRLVTAMRGSIAKVVKRFREGEAYLGDLFAGNYLFLQ 120
             SIGRRLKKLR+PSLRKLLRRK RLV AMRGSIAKVVKRFR+GEAYLGDLFAGNYLFLQ
Sbjct: 61  SLSIGRRLKKLRIPSLRKLLRRKWRLVNAMRGSIAKVVKRFRDGEAYLGDLFAGNYLFLQ 120

Query: 121 VNPSSIKCHKNHHSALQ-------NFAPTYSL 138
           VNPSS+KC KNHH   Q       NF  TYSL
Sbjct: 121 VNPSSMKCLKNHHHHQQQHGFDVRNFPQTYSL 150

[Close]

BLAST of Cp4.1LG01g23500 vs. TrEMBL
Match: I1MLS3_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_16G068200 PE=4 SV=2)

HSP 1 Score: 99.4 bits (246), Expect = 3.7e-18
Identity = 56/109 (51.38%), Postives = 78/109 (71.56%), Query Frame = 1


Query: 12  KFRYRRLRYSEEFEEAFGRSRGGEERRRRFVGRSKRWFRIRRASIGRRLKKLRVPSLRKL 71
           K RY+RLR+           +G ++ R R   RS+ WFR RR  I RR  +L++PSLR+L
Sbjct: 22  KLRYQRLRHE----------KGWDDERER---RSRSWFRFRRVPIRRRF-RLKIPSLRRL 81

Query: 72  LRRKSRLVTAMRGSIAKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIKC 121
            R+++RLV++MR S AKV+KRF+EG+ + GDLFAGNYLF+ VNP+S+KC
Sbjct: 82  WRKRARLVSSMRISYAKVMKRFKEGQVHFGDLFAGNYLFMHVNPTSLKC 116

[Close]

BLAST of Cp4.1LG01g23500 vs. TrEMBL
Match: A0A0B2R0T3_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_018683 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 3.7e-18
Identity = 56/109 (51.38%), Postives = 78/109 (71.56%), Query Frame = 1


Query: 12  KFRYRRLRYSEEFEEAFGRSRGGEERRRRFVGRSKRWFRIRRASIGRRLKKLRVPSLRKL 71
           K RY+RLR+           +G ++ R R   RS+ WFR RR  I RR  +L++PSLR+L
Sbjct: 12  KLRYQRLRHE----------KGWDDERER---RSRSWFRFRRVPIRRRF-RLKIPSLRRL 71

Query: 72  LRRKSRLVTAMRGSIAKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIKC 121
            R+++RLV++MR S AKV+KRF+EG+ + GDLFAGNYLF+ VNP+S+KC
Sbjct: 72  WRKRARLVSSMRISYAKVMKRFKEGQVHFGDLFAGNYLFMHVNPTSLKC 106

[Close]

BLAST of Cp4.1LG01g23500 vs. TrEMBL
Match: A0A151TWZ0_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_010848 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 3.7e-18
Identity = 57/110 (51.82%), Postives = 76/110 (69.09%), Query Frame = 1


Query: 11  GKFRYRRLRYSEEFEEAFGRSRGGEERRRRFVGRSKRWFRIRRASIGRRLKKLRVPSLRK 70
           GK RY++LR+              EER +    R K WFR RR  I RR  +L++PSLR+
Sbjct: 5   GKLRYQKLRHENV---------SVEERDKVSQIRPKSWFRFRRVPIRRRF-RLKIPSLRR 64

Query: 71  LLRRKSRLVTAMRGSIAKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIKC 121
           L R+++RLV++MR S AKVVKRF+EG+ + GDLFAGNYLF+ VNP+S+KC
Sbjct: 65  LWRKRARLVSSMRISYAKVVKRFKEGQVHFGDLFAGNYLFMHVNPTSLKC 104

[Close]

BLAST of Cp4.1LG01g23500 vs. TrEMBL
Match: K7MX61_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 6.4e-18
Identity = 57/110 (51.82%), Postives = 78/110 (70.91%), Query Frame = 1


Query: 11  GKFRYRRLRYSEEFEEAFGRSRGGEERRRRFVGRSKRWFRIRRASIGRRLKKLRVPSLRK 70
           GK RY+RLR+ + ++       G  ERR R       WFR RR  I RRL +L++ SLR+
Sbjct: 96  GKLRYQRLRHEKGWD-------GERERRPR------SWFRFRRVPIRRRL-RLKISSLRR 155

Query: 71  LLRRKSRLVTAMRGSIAKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIKC 121
           L R+++RLV++MR S AKV+KRF+EG+ + GDLFAGNYLF+ VNP+S+KC
Sbjct: 156 LWRKRARLVSSMRISYAKVLKRFKEGQVHFGDLFAGNYLFMHVNPASLKC 191

[Close]

BLAST of Cp4.1LG01g23500 vs. TAIR10
Match: AT5G14410.1 (AT5G14410.1 unknown protein)

HSP 1 Score: 56.2 bits (134), Expect = 1.8e-08
Identity = 36/86 (41.86%), Postives = 56/86 (65.12%), Query Frame = 1


Query: 34  GEERRRRFVGRSKRWFRIRRASIGRRLK-KLRVPSLRKLLRRKSRLVTAMRGSIAKVVKR 93
           GE  RRR    S R+ R+      RR++ ++++  LR  +R+K+  V   +  I K++KR
Sbjct: 23  GETTRRRSSFYSYRFKRVVSLGGRRRIRVRVKIRRLRGFVRKKANRV---KTGILKILKR 82

Query: 94  FREGEAYLGDLFAGNYLFLQVNPSSI 119
            +E +++ GDLFAGNYLF+QVNPSS+
Sbjct: 83  LKESQSHFGDLFAGNYLFMQVNPSSL 105

[Close]

BLAST of Cp4.1LG01g23500 vs. NCBI nr
Match: gi|778703543|ref|XP_011655383.1| (PREDICTED: uncharacterized protein LOC105435522 [Cucumis sativus])

HSP 1 Score: 179.5 bits (454), Expect = 4.1e-42
Identity = 109/152 (71.71%), Postives = 118/152 (77.63%), Query Frame = 1


Query: 1   MPDLDTTAAPGKFRYRRLRYSEEFEEAFGRSR--GGEERRRRFVGRSKRWFRIRRA---- 60
           M DL+T +A GKFRYRRLRYSEEFEEAFGRSR  GGE  R+R+  R + WFR+R      
Sbjct: 1   MADLETASA-GKFRYRRLRYSEEFEEAFGRSREGGGEGIRKRW-RRRRWWFRMRMRKGSS 60

Query: 61  --SIGRRLKKLRVPSLRKLLRRKSRLVTAMRGSIAKVVKRFREGEAYLGDLFAGNYLFLQ 120
             SIGRRLKKLR+PSLRKLLRRK RLV AMRGSIAKVVKRFR+GEAYLGDLFAGNYLFLQ
Sbjct: 61  SLSIGRRLKKLRIPSLRKLLRRKWRLVNAMRGSIAKVVKRFRDGEAYLGDLFAGNYLFLQ 120

Query: 121 VNPSSIKCHKNHHSALQ-------NFAPTYSL 138
           VNPSS+KC KNHH   Q       NF  TYSL
Sbjct: 121 VNPSSMKCLKNHHHHQQQHGFDVRNFPQTYSL 150

[Close]

BLAST of Cp4.1LG01g23500 vs. NCBI nr
Match: gi|947057694|gb|KRH07100.1| (hypothetical protein GLYMA_16G068200 [Glycine max])

HSP 1 Score: 99.4 bits (246), Expect = 5.4e-18
Identity = 56/109 (51.38%), Postives = 78/109 (71.56%), Query Frame = 1


Query: 12  KFRYRRLRYSEEFEEAFGRSRGGEERRRRFVGRSKRWFRIRRASIGRRLKKLRVPSLRKL 71
           K RY+RLR+           +G ++ R R   RS+ WFR RR  I RR  +L++PSLR+L
Sbjct: 22  KLRYQRLRHE----------KGWDDERER---RSRSWFRFRRVPIRRRF-RLKIPSLRRL 81

Query: 72  LRRKSRLVTAMRGSIAKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIKC 121
            R+++RLV++MR S AKV+KRF+EG+ + GDLFAGNYLF+ VNP+S+KC
Sbjct: 82  WRKRARLVSSMRISYAKVMKRFKEGQVHFGDLFAGNYLFMHVNPTSLKC 116

[Close]

BLAST of Cp4.1LG01g23500 vs. NCBI nr
Match: gi|1012360399|gb|KYP71583.1| (hypothetical protein KK1_010848 [Cajanus cajan])

HSP 1 Score: 99.4 bits (246), Expect = 5.4e-18
Identity = 57/110 (51.82%), Postives = 76/110 (69.09%), Query Frame = 1


Query: 11  GKFRYRRLRYSEEFEEAFGRSRGGEERRRRFVGRSKRWFRIRRASIGRRLKKLRVPSLRK 70
           GK RY++LR+              EER +    R K WFR RR  I RR  +L++PSLR+
Sbjct: 5   GKLRYQKLRHENV---------SVEERDKVSQIRPKSWFRFRRVPIRRRF-RLKIPSLRR 64

Query: 71  LLRRKSRLVTAMRGSIAKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIKC 121
           L R+++RLV++MR S AKVVKRF+EG+ + GDLFAGNYLF+ VNP+S+KC
Sbjct: 65  LWRKRARLVSSMRISYAKVVKRFKEGQVHFGDLFAGNYLFMHVNPTSLKC 104

[Close]

BLAST of Cp4.1LG01g23500 vs. NCBI nr
Match: gi|734392080|gb|KHN27571.1| (hypothetical protein glysoja_018683 [Glycine soja])

HSP 1 Score: 99.4 bits (246), Expect = 5.4e-18
Identity = 56/109 (51.38%), Postives = 78/109 (71.56%), Query Frame = 1


Query: 12  KFRYRRLRYSEEFEEAFGRSRGGEERRRRFVGRSKRWFRIRRASIGRRLKKLRVPSLRKL 71
           K RY+RLR+           +G ++ R R   RS+ WFR RR  I RR  +L++PSLR+L
Sbjct: 12  KLRYQRLRHE----------KGWDDERER---RSRSWFRFRRVPIRRRF-RLKIPSLRRL 71

Query: 72  LRRKSRLVTAMRGSIAKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIKC 121
            R+++RLV++MR S AKV+KRF+EG+ + GDLFAGNYLF+ VNP+S+KC
Sbjct: 72  WRKRARLVSSMRISYAKVMKRFKEGQVHFGDLFAGNYLFMHVNPTSLKC 106

[Close]

BLAST of Cp4.1LG01g23500 vs. NCBI nr
Match: gi|571555341|ref|XP_006604105.1| (PREDICTED: uncharacterized protein LOC102659553 [Glycine max])

HSP 1 Score: 98.6 bits (244), Expect = 9.1e-18
Identity = 57/110 (51.82%), Postives = 78/110 (70.91%), Query Frame = 1


Query: 11  GKFRYRRLRYSEEFEEAFGRSRGGEERRRRFVGRSKRWFRIRRASIGRRLKKLRVPSLRK 70
           GK RY+RLR+ + ++       G  ERR R       WFR RR  I RRL +L++ SLR+
Sbjct: 96  GKLRYQRLRHEKGWD-------GERERRPR------SWFRFRRVPIRRRL-RLKISSLRR 155

Query: 71  LLRRKSRLVTAMRGSIAKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIKC 121
           L R+++RLV++MR S AKV+KRF+EG+ + GDLFAGNYLF+ VNP+S+KC
Sbjct: 156 LWRKRARLVSSMRISYAKVLKRFKEGQVHFGDLFAGNYLFMHVNPASLKC 191

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g23500 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g23500 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KSD1_CUCSA	2.8e-42	71.71	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G517900 PE=4 SV=1	[more]
I1MLS3_SOYBN	3.7e-18	51.38	Uncharacterized protein OS=Glycine max GN=GLYMA_16G068200 PE=4 SV=2	[more]
A0A0B2R0T3_GLYSO	3.7e-18	51.38	Uncharacterized protein OS=Glycine soja GN=glysoja_018683 PE=4 SV=1	[more]
A0A151TWZ0_CAJCA	3.7e-18	51.82	Uncharacterized protein OS=Cajanus cajan GN=KK1_010848 PE=4 SV=1	[more]
K7MX61_SOYBN	6.4e-18	51.82	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]

BLAST of Cp4.1LG01g23500 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G14410.1	1.8e-08	41.86	unknown protein	[more]

BLAST of Cp4.1LG01g23500 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778703543\|ref\|XP_011655383.1\|	4.1e-42	71.71	PREDICTED: uncharacterized protein LOC105435522 [Cucumis sativus]	[more]
gi\|947057694\|gb\|KRH07100.1\|	5.4e-18	51.38	hypothetical protein GLYMA_16G068200 [Glycine max]	[more]
gi\|1012360399\|gb\|KYP71583.1\|	5.4e-18	51.82	hypothetical protein KK1_010848 [Cajanus cajan]	[more]
gi\|734392080\|gb\|KHN27571.1\|	5.4e-18	51.38	hypothetical protein glysoja_018683 [Glycine soja]	[more]
gi\|571555341\|ref\|XP_006604105.1\|	9.1e-18	51.82	PREDICTED: uncharacterized protein LOC102659553 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006661	phosphatidylinositol biosynthetic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g23500.1	Cp4.1LG01g23500.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36795	FAMILY NOT NAMED	coord: 12..120 score: 2.2
None	No IPR available	PANTHER	PTHR36795:SF2	SUBFAMILY NOT NAMED	coord: 12..120 score: 2.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g23500	Cucsa.011100	Cucumber (Gy14) v1	cgycpeB0522
Cp4.1LG01g23500	CmaCh15G003680	Cucurbita maxima (Rimu)	cmacpeB317
Cp4.1LG01g23500	CmaCh04G026700	Cucurbita maxima (Rimu)	cmacpeB721
Cp4.1LG01g23500	CmoCh04G027990	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g23500	Cla004635	Watermelon (97103) v1	cpewmB381
Cp4.1LG01g23500	Csa5G517900	Cucumber (Chinese Long) v2	cpecuB417
Cp4.1LG01g23500	MELO3C021597	Melon (DHL92) v3.5.1	cpemeB358
Cp4.1LG01g23500	ClCG09G019420	Watermelon (Charleston Gray)	cpewcgB344
Cp4.1LG01g23500	CSPI05G18040	Wild cucumber (PI 183967)	cpecpiB416
Cp4.1LG01g23500	MELO3C021597.2	Melon (DHL92) v3.6.1	cpemedB418
Cp4.1LG01g23500	CsaV3_5G026960	Cucumber (Chinese Long) v3	cpecucB0519
Cp4.1LG01g23500	Bhi06G000492	Wax gourd	cpewgoB0502
Cp4.1LG01g23500	Carg02332	Silver-seed gourd	carcpeB0374
Cp4.1LG01g23500	Carg04474	Silver-seed gourd	carcpeB0965

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g23500	Bottle gourd (USVL1VR-Ls)	cpelsiB336
Cp4.1LG01g23500	Cucumber (Gy14) v2	cgybcpeB062
Cp4.1LG01g23500	Cucumber (Gy14) v2	cgybcpeB627
Cp4.1LG01g23500	Silver-seed gourd	carcpeB0509
Cp4.1LG01g23500	Silver-seed gourd	carcpeB0517
Cp4.1LG01g23500	Silver-seed gourd	carcpeB0611
Cp4.1LG01g23500	Cucumber (Chinese Long) v3	cpecucB0473
Cp4.1LG01g23500	Cucurbita pepo (Zucchini)	cpecpeB199
Cp4.1LG01g23500	Cucurbita pepo (Zucchini)	cpecpeB347
Cp4.1LG01g23500	Cucurbita pepo (Zucchini)	cpecpeB396
Cp4.1LG01g23500	Cucurbita pepo (Zucchini)	cpecpeB398
Cp4.1LG01g23500	Cucurbita moschata (Rifu)	cmocpeB279