Carg02332 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg02332
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Plexin-D1 like
Location	Cucurbita_argyrosperma_scaffold_007 : 1248255 .. 1248662 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGACCTCGAAATCGCATCCGCAGCCAAGTTCCGGTACCGGAGACTGCGGCACAGCGACGAATCGGAGTCGGCGATTGCGAGATCCAGACTAGGAGAACAGAGGAGGTTTGGAGGTTTCAGAATGCGAAGGGCTTCGATCGGGAGGAGGTTGAAGAAGCTCAGAATCCCTAGCCTCCGAAAGCTTTTCAGAAAATCGCGGCTGGTGAATGCCATGGGAGGCTCCATTTCCAAGGTTCTGAAGCGATTCAGAGATGGCGAAGCGTATTTGGGAGATCTTTTCGCCGGAAATTACTTGTTCCTTCAGATCAATCCAAGCTCCATCAAATGCCTTGCGAACCACCATCAGTATCCCCTTCAAAATTTCCCCCCAACTTTCTCCCTCCCAGCTTTACCTAATTACTAA

mRNA sequence

ATGGCGGACCTCGAAATCGCATCCGCAGCCAAGTTCCGGTACCGGAGACTGCGGCACAGCGACGAATCGGAGTCGGCGATTGCGAGATCCAGACTAGGAGAACAGAGGAGGTTTGGAGGTTTCAGAATGCGAAGGGCTTCGATCGGGAGGAGGTTGAAGAAGCTCAGAATCCCTAGCCTCCGAAAGCTTTTCAGAAAATCGCGGCTGGTGAATGCCATGGGAGGCTCCATTTCCAAGGTTCTGAAGCGATTCAGAGATGGCGAAGCGTATTTGGGAGATCTTTTCGCCGGAAATTACTTGTTCCTTCAGATCAATCCAAGCTCCATCAAATGCCTTGCGAACCACCATCAGTATCCCCTTCAAAATTTCCCCCCAACTTTCTCCCTCCCAGCTTTACCTAATTACTAA

Coding sequence (CDS)

ATGGCGGACCTCGAAATCGCATCCGCAGCCAAGTTCCGGTACCGGAGACTGCGGCACAGCGACGAATCGGAGTCGGCGATTGCGAGATCCAGACTAGGAGAACAGAGGAGGTTTGGAGGTTTCAGAATGCGAAGGGCTTCGATCGGGAGGAGGTTGAAGAAGCTCAGAATCCCTAGCCTCCGAAAGCTTTTCAGAAAATCGCGGCTGGTGAATGCCATGGGAGGCTCCATTTCCAAGGTTCTGAAGCGATTCAGAGATGGCGAAGCGTATTTGGGAGATCTTTTCGCCGGAAATTACTTGTTCCTTCAGATCAATCCAAGCTCCATCAAATGCCTTGCGAACCACCATCAGTATCCCCTTCAAAATTTCCCCCCAACTTTCTCCCTCCCAGCTTTACCTAATTACTAA

Protein sequence

MADLEIASAAKFRYRRLRHSDESESAIARSRLGEQRRFGGFRMRRASIGRRLKKLRIPSLRKLFRKSRLVNAMGGSISKVLKRFRDGEAYLGDLFAGNYLFLQINPSSIKCLANHHQYPLQNFPPTFSLPALPNY

Homology

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BLAST of Carg02332 vs. NCBI nr
Match: XP_022939385.1 (uncharacterized protein LOC111445317 [Cucurbita moschata])

HSP 1 Score: 258.5 bits (659), Expect = 1.3e-65
Identity = 133/135 (98.52%), Postives = 133/135 (98.52%), Query Frame = 0


Query: 1   MADLEIASAAKFRYRRLRHSDESESAIARSRLGEQRRFGGFRMRRASIGRRLKKLRIPSL 60
           MADLEIASAAKFRYRRLRHSDE ESA ARSRLGEQRRFGGFRMRRASIGRRLKKLRIPSL
Sbjct: 53  MADLEIASAAKFRYRRLRHSDELESAFARSRLGEQRRFGGFRMRRASIGRRLKKLRIPSL 112

Query: 61  RKLFRKSRLVNAMGGSISKVLKRFRDGEAYLGDLFAGNYLFLQINPSSIKCLANHHQYPL 120
           RKLFRKSRLVNAMGGSISKVLKRFRDGEAYLGDLFAGNYLFLQINPSSIKCLANHHQYPL
Sbjct: 113 RKLFRKSRLVNAMGGSISKVLKRFRDGEAYLGDLFAGNYLFLQINPSSIKCLANHHQYPL 172

Query: 121 QNFPPTFSLPALPNY 136
           QNFPPTFSLPALPNY
Sbjct: 173 QNFPPTFSLPALPNY 187

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BLAST of Carg02332 vs. NCBI nr
Match: XP_023551524.1 (uncharacterized protein LOC111809316 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 252.3 bits (643), Expect = 9.3e-64
Identity = 130/135 (96.30%), Postives = 131/135 (97.04%), Query Frame = 0


Query: 1   MADLEIASAAKFRYRRLRHSDESESAIARSRLGEQRRFGGFRMRRASIGRRLKKLRIPSL 60
           MAD EIASAAKFRYRRLRHSDE ESA ARSRLGEQRRFGGFRMRRASIGRRLKKLRIPSL
Sbjct: 1   MADQEIASAAKFRYRRLRHSDELESAFARSRLGEQRRFGGFRMRRASIGRRLKKLRIPSL 60

Query: 61  RKLFRKSRLVNAMGGSISKVLKRFRDGEAYLGDLFAGNYLFLQINPSSIKCLANHHQYPL 120
           RKLFRKSRLVNAMGGSISKVLKRFRDGEAYLGDLFAGNYLFLQINPSSIKCL NHHQYPL
Sbjct: 61  RKLFRKSRLVNAMGGSISKVLKRFRDGEAYLGDLFAGNYLFLQINPSSIKCLPNHHQYPL 120

Query: 121 QNFPPTFSLPALPNY 136
           Q+FPPTFSLPALPNY
Sbjct: 121 QSFPPTFSLPALPNY 135

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BLAST of Carg02332 vs. NCBI nr
Match: XP_023551709.1 (uncharacterized protein LOC111809563 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 166.4 bits (420), Expect = 6.7e-38
Identity = 98/138 (71.01%), Postives = 110/138 (79.71%), Query Frame = 0


Query: 1   MADLEIASA-AKFRYRRLRHSDESESAIARSRLGEQ--RRFGG-----FRMRRASIGRRL 60
           M DL+  +A  KFRYRRLR+S+E E A  RSR GE+  RRF G     FR+RRASIGRRL
Sbjct: 1   MPDLDTTAAPGKFRYRRLRYSEEFEEAFGRSRGGEERRRRFVGRSKRWFRIRRASIGRRL 60

Query: 61  KKLRIPSLRKLF-RKSRLVNAMGGSISKVLKRFRDGEAYLGDLFAGNYLFLQINPSSIKC 120
           KKLR+PSLRKL  RKSRLV AM GSI+KV+KRFR+GEAYLGDLFAGNYLFLQ+NPSSIKC
Sbjct: 61  KKLRVPSLRKLLRRKSRLVTAMRGSIAKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIKC 120

Query: 121 LANHHQYPLQNFPPTFSL 130
             NHH   LQNF PT+SL
Sbjct: 121 HKNHHS-ALQNFAPTYSL 137

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BLAST of Carg02332 vs. NCBI nr
Match: XP_022922294.1 (uncharacterized protein LOC111430312 [Cucurbita moschata])

HSP 1 Score: 165.2 bits (417), Expect = 1.5e-37
Identity = 98/139 (70.50%), Postives = 109/139 (78.42%), Query Frame = 0


Query: 1   MADLE-IASAAKFRYRRLRHSDESESAIARSRLGE---QRRFGG-----FRMRRASIGRR 60
           M DL+  A   KFRYRRLR+S+E E A  RSR GE   +RRF G     FR+RRASIGRR
Sbjct: 17  MPDLDTTAPPGKFRYRRLRYSEEFEEAFGRSRRGEARRRRRFVGRSKRWFRIRRASIGRR 76

Query: 61  LKKLRIPSLRKLF-RKSRLVNAMGGSISKVLKRFRDGEAYLGDLFAGNYLFLQINPSSIK 120
           LKKLR+PSLRKL  RKSRLV AM GSI+KV+KRFR+GEAYLGDLFAGNYLFLQ+NPSSIK
Sbjct: 77  LKKLRVPSLRKLLRRKSRLVTAMRGSIAKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIK 136

Query: 121 CLANHHQYPLQNFPPTFSL 130
           C  NHH   LQNF PT+SL
Sbjct: 137 CHKNHHS-ALQNFAPTYSL 154

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BLAST of Carg02332 vs. NCBI nr
Match: XP_011655383.1 (PREDICTED: uncharacterized protein LOC105435522 [Cucumis sativus] >KGN51342.1 hypothetical protein Csa_5G517900 [Cucumis sativus])

HSP 1 Score: 156.8 bits (395), Expect = 5.3e-35
Identity = 96/152 (63.16%), Postives = 111/152 (73.03%), Query Frame = 0


Query: 1   MADLEIASAAKFRYRRLRHSDESESAIARSRLGE----QRRF------GGFRMRRA---- 60
           MADLE ASA KFRYRRLR+S+E E A  RSR G     ++R+         RMR+     
Sbjct: 1   MADLETASAGKFRYRRLRYSEEFEEAFGRSREGGGEGIRKRWRXXXXXXRMRMRKGSSSL 60

Query: 61  SIGRRLKKLRIPSLRKLF-RKSRLVNAMGGSISKVLKRFRDGEAYLGDLFAGNYLFLQIN 120
           SIGRRLKKLRIPSLRKL  RK RLVNAM GSI+KV+KRFRDGEAYLGDLFAGNYLFLQ+N
Sbjct: 61  SIGRRLKKLRIPSLRKLLRRKWRLVNAMRGSIAKVVKRFRDGEAYLGDLFAGNYLFLQVN 120

Query: 121 PSSIKCLAN------HHQYPLQNFPPTFSLPA 132
           PSS+KCL N       H + ++NFP T+SLP+
Sbjct: 121 PSSMKCLKNXXXXXXXHGFDVRNFPQTYSLPS 152

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BLAST of Carg02332 vs. TAIR10
Match: AT5G14410.1 (unknown protein)

HSP 1 Score: 58.5 bits (140), Expect = 3.6e-09
Identity = 46/124 (37.10%), Postives = 66/124 (53.23%), Query Frame = 0


Query: 14  YRRLRHSDESESAIARSRLGEQRRFGGFRMRR-ASIG--RRLK-KLRIPSLRKLFRKSRL 73
           Y+RL   D+      R R      F  +R +R  S+G  RR++ +++I  LR   RK   
Sbjct: 12  YKRLSLEDDVFGETTRRR----SSFYSYRFKRVVSLGGRRRIRVRVKIRRLRGFVRKK-- 71

Query: 74  VNAMGGSISKVLKRFRDGEAYLGDLFAGNYLFLQINPSSIKC---LANHHQYPLQNFPPT 131
            N +   I K+LKR ++ +++ GDLFAGNYLF+Q+NPSS+          Q    NFP  
Sbjct: 72  ANRVKTGILKILKRLKESQSHFGDLFAGNYLFMQVNPSSLNAKYVFDKSFQGQNGNFPSR 129

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BLAST of Carg02332 vs. TrEMBL
Match: tr|A0A0A0KSD1|A0A0A0KSD1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G517900 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 3.5e-35
Identity = 96/152 (63.16%), Postives = 111/152 (73.03%), Query Frame = 0


Query: 1   MADLEIASAAKFRYRRLRHSDESESAIARSRLGE----QRRF------GGFRMRRA---- 60
           MADLE ASA KFRYRRLR+S+E E A  RSR G     ++R+         RMR+     
Sbjct: 1   MADLETASAGKFRYRRLRYSEEFEEAFGRSREGGGEGIRKRWRXXXXXXRMRMRKGSSSL 60

Query: 61  SIGRRLKKLRIPSLRKLF-RKSRLVNAMGGSISKVLKRFRDGEAYLGDLFAGNYLFLQIN 120
           SIGRRLKKLRIPSLRKL  RK RLVNAM GSI+KV+KRFRDGEAYLGDLFAGNYLFLQ+N
Sbjct: 61  SIGRRLKKLRIPSLRKLLRRKWRLVNAMRGSIAKVVKRFRDGEAYLGDLFAGNYLFLQVN 120

Query: 121 PSSIKCLAN------HHQYPLQNFPPTFSLPA 132
           PSS+KCL N       H + ++NFP T+SLP+
Sbjct: 121 PSSMKCLKNXXXXXXXHGFDVRNFPQTYSLPS 152

[Close]

BLAST of Carg02332 vs. TrEMBL
Match: tr|A0A1S4E272|A0A1S4E272_CUCME (uncharacterized protein LOC107991631 OS=Cucumis melo OX=3656 GN=LOC107991631 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 8.7e-34
Identity = 91/147 (61.90%), Postives = 101/147 (68.71%), Query Frame = 0


Query: 1   MADLEIASAAKFRYRRLRHSDESESAIARSRLGEQRRFGGFR-------------MRRAS 60
           MADLE ASA KFRYRRLR+S+E E A  RS                             S
Sbjct: 1   MADLETASAGKFRYRRLRYSEEFEEAFGRSXXXXXXXXXXXXXXXXXXXXXXXXGSSSLS 60

Query: 61  IGRRLKKLRIPSLRKLF-RKSRLVNAMGGSISKVLKRFRDGEAYLGDLFAGNYLFLQINP 120
           IGRRLKKLRIPSLRKL  RK RLVNAM GSI+KVLKRFRDGEAYLGDLFAGNYLFLQ+NP
Sbjct: 61  IGRRLKKLRIPSLRKLMRRKWRLVNAMRGSIAKVLKRFRDGEAYLGDLFAGNYLFLQVNP 120

Query: 121 SSIKCLANHHQ---YPLQNFPPTFSLP 131
           SS+KC+ NHHQ   + ++NF  T+SLP
Sbjct: 121 SSMKCMKNHHQQHGFDVRNFTQTYSLP 147

[Close]

BLAST of Carg02332 vs. TrEMBL
Match: tr|I3SHD4|I3SHD4_LOTJA (Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 6.7e-18
Identity = 57/113 (50.44%), Postives = 81/113 (71.68%), Query Frame = 0


Query: 1   MADLEIASAAKFRYRRLRHSDESESAIARSRLGEQRRFGGFRMRRASIGRRLKKLRIPSL 60
           M++++IAS +KFRY+RL+H    E    R  +   + +  FR RR  I RR  +L+IPSL
Sbjct: 1   MSNIQIASVSKFRYQRLKHEGGYEIERDRVLIQRPKSWFRFRFRRIQIRRRF-RLKIPSL 60

Query: 61  RKLFRKS-RLVNAMGGSISKVLKRFRDGEAYLGDLFAGNYLFLQINPSSIKCL 113
           ++L+RK  RLV++M  S +KVLKRF+D + + GDLFAGNYLF+Q+NPSS+K L
Sbjct: 61  KRLWRKRVRLVSSMRLSYAKVLKRFKDNKVHFGDLFAGNYLFMQVNPSSLKYL 112

[Close]

BLAST of Carg02332 vs. TrEMBL
Match: tr|A0A151TWZ0|A0A151TWZ0_CAJCA (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_010848 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 4.8e-16
Identity = 52/103 (50.49%), Postives = 76/103 (73.79%), Query Frame = 0


Query: 11  KFRYRRLRHSDESESAIARSRLGEQRRFGGFRMRRASIGRRLKKLRIPSLRKLFRK-SRL 70
           K RY++LRH  E+ S   R ++ + R    FR RR  I RR  +L+IPSLR+L+RK +RL
Sbjct: 6   KLRYQKLRH--ENVSVEERDKVSQIRPKSWFRFRRVPIRRRF-RLKIPSLRRLWRKRARL 65

Query: 71  VNAMGGSISKVLKRFRDGEAYLGDLFAGNYLFLQINPSSIKCL 113
           V++M  S +KV+KRF++G+ + GDLFAGNYLF+ +NP+S+KC+
Sbjct: 66  VSSMRISYAKVVKRFKEGQVHFGDLFAGNYLFMHVNPTSLKCI 105

[Close]

BLAST of Carg02332 vs. TrEMBL
Match: tr|I1N7H1|I1N7H1_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_19G078800 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 6.3e-16
Identity = 55/113 (48.67%), Postives = 77/113 (68.14%), Query Frame = 0


Query: 1   MADLEIASAAKFRYRRLRHSDESESAIARSRLGEQRRFGGFRMRRASIGRRLKKLRIPSL 60
           M+ L++    K RY+RLRH    +         E+R    FR RR  I RRL +L+I SL
Sbjct: 11  MSTLQMVPLGKLRYQRLRHEKGWDGE------RERRPRSWFRFRRVPIRRRL-RLKISSL 70

Query: 61  RKLFRK-SRLVNAMGGSISKVLKRFRDGEAYLGDLFAGNYLFLQINPSSIKCL 113
           R+L+RK +RLV++M  S +KVLKRF++G+ + GDLFAGNYLF+ +NP+S+KCL
Sbjct: 71  RRLWRKRARLVSSMRISYAKVLKRFKEGQVHFGDLFAGNYLFMHVNPASLKCL 116

The following BLAST results are available for this feature:

BLAST of Carg02332 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022939385.1	1.3e-65	98.52	uncharacterized protein LOC111445317 [Cucurbita moschata]	[more]
XP_023551524.1	9.3e-64	96.30	uncharacterized protein LOC111809316 [Cucurbita pepo subsp. pepo]	[more]
XP_023551709.1	6.7e-38	71.01	uncharacterized protein LOC111809563 [Cucurbita pepo subsp. pepo]	[more]
XP_022922294.1	1.5e-37	70.50	uncharacterized protein LOC111430312 [Cucurbita moschata]	[more]
XP_011655383.1	5.3e-35	63.16	PREDICTED: uncharacterized protein LOC105435522 [Cucumis sativus] >KGN51342.1 hy...	[more]

BLAST of Carg02332 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G14410.1	3.6e-09	37.10	unknown protein	[more]

BLAST of Carg02332 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg02332 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KSD1\|A0A0A0KSD1_CUCSA	3.5e-35	63.16	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G517900 PE=4 SV=1	[more]
tr\|A0A1S4E272\|A0A1S4E272_CUCME	8.7e-34	61.90	uncharacterized protein LOC107991631 OS=Cucumis melo OX=3656 GN=LOC107991631 PE=...	[more]
tr\|I3SHD4\|I3SHD4_LOTJA	6.7e-18	50.44	Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1	[more]
tr\|A0A151TWZ0\|A0A151TWZ0_CAJCA	4.8e-16	50.49	Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_010848 PE=4 SV=1	[more]
tr\|I1N7H1\|I1N7H1_SOYBN	6.3e-16	48.67	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_19G078800 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02332-RA	Carg02332-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36795	FAMILY NOT NAMED	coord: 3..117
None	No IPR available	PANTHER	PTHR36795:SF2	SUBFAMILY NOT NAMED	coord: 3..117

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg02332	Cla004635	Watermelon (97103) v1	carwmB0246
Carg02332	Csa5G517900	Cucumber (Chinese Long) v2	carcuB0294
Carg02332	MELO3C021597	Melon (DHL92) v3.5.1	carmeB0260
Carg02332	ClCG09G019420	Watermelon (Charleston Gray)	carwcgB0249
Carg02332	CSPI05G18040	Wild cucumber (PI 183967)	carcpiB0298
Carg02332	Cucsa.011100	Cucumber (Gy14) v1	carcgyB0315
Carg02332	CmaCh04G026700	Cucurbita maxima (Rimu)	carcmaB0374
Carg02332	CmaCh15G003680	Cucurbita maxima (Rimu)	carcmaB0362
Carg02332	CmoCh04G027990	Cucurbita moschata (Rifu)	carcmoB0370
Carg02332	Cp4.1LG01g23500	Cucurbita pepo (Zucchini)	carcpeB0374
Carg02332	MELO3C021597.2	Melon (DHL92) v3.6.1	carmedB0270
Carg02332	CsaV3_5G026960	Cucumber (Chinese Long) v3	carcucB0297
Carg02332	Cla97C09G180880	Watermelon (97103) v2	carwmbB0279
Carg02332	Bhi06G000492	Wax gourd	carwgoB0339

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg02332	Carg04474	Silver-seed gourd	carcarB306

The following block(s) are covering this gene:


Gene	Organism	Block
Carg02332	Silver-seed gourd	carcarB298
Carg02332	Silver-seed gourd	carcarB310
Carg02332	Cucumber (Gy14) v2	carcgybB0281
Carg02332	Cucurbita maxima (Rimu)	carcmaB0357
Carg02332	Cucurbita moschata (Rifu)	carcmoB0359
Carg02332	Cucurbita moschata (Rifu)	carcmoB0362
Carg02332	Cucurbita pepo (Zucchini)	carcpeB0366
Carg02332	Cucurbita pepo (Zucchini)	carcpeB0381
Carg02332	Bottle gourd (USVL1VR-Ls)	carlsiB232