CmaCh15G003680 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh15G003680
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_231
Location	Cma_Chr15 : 1697813 .. 1698370 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGCTATCATCAACAAGTTTCGAACGAAGATGCAAATCCCTACCTCCAGTAGCCAAGCCATTTAATGCTCTCAACAATCTCTCTCTATCTCTCCCTTTTAATGCCCTCTCACTGCTTCTCAACAGATCAATTCGATCTTCTTCCAAATCCTTCATGGCGGACCTCGAAATCGCATCCGCAGCCAAATTCCGGTACCGGAGACTGCGGCACAGCGACGAATTGGAGTCGGCGATTGCGAGATCCAGACTAGGAGAACAGAGGAGGTTTGGAGGTTTCAGAATGCGAAGGGCTTCGATCGGGAGGAGGTTGAAGAAGCTCAGAATCCCTAGCCTCCGAAAGCTTTTCAGGAAATCGCGGCTGGTGAATGCCATGGGAGGCTCCATTTCCAAGGTTCTGAAGCGATTCAGAGATGGCGAAGCGCATTTGGGAGATCTTTTTGCTGGAAATTACTTGTTCCTTCAGATCAATCCAAGCTCCATCAAATGCCTTACGAACCACCATCAGTATCCCCTTCAAAATTTCCCCCCAACTTTCTCCCTCCCAGCTTTTACCTAA

mRNA sequence

ATGCTGCTATCATCAACAAGTTTCGAACGAAGATGCAAATCCCTACCTCCAGTAGCCAAGCCATTTAATGCTCTCAACAATCTCTCTCTATCTCTCCCTTTTAATGCCCTCTCACTGCTTCTCAACAGATCAATTCGATCTTCTTCCAAATCCTTCATGGCGGACCTCGAAATCGCATCCGCAGCCAAATTCCGGTACCGGAGACTGCGGCACAGCGACGAATTGGAGTCGGCGATTGCGAGATCCAGACTAGGAGAACAGAGGAGGTTTGGAGGTTTCAGAATGCGAAGGGCTTCGATCGGGAGGAGGTTGAAGAAGCTCAGAATCCCTAGCCTCCGAAAGCTTTTCAGGAAATCGCGGCTGGTGAATGCCATGGGAGGCTCCATTTCCAAGGTTCTGAAGCGATTCAGAGATGGCGAAGCGCATTTGGGAGATCTTTTTGCTGGAAATTACTTGTTCCTTCAGATCAATCCAAGCTCCATCAAATGCCTTACGAACCACCATCAGTATCCCCTTCAAAATTTCCCCCCAACTTTCTCCCTCCCAGCTTTTACCTAA

Coding sequence (CDS)

ATGCTGCTATCATCAACAAGTTTCGAACGAAGATGCAAATCCCTACCTCCAGTAGCCAAGCCATTTAATGCTCTCAACAATCTCTCTCTATCTCTCCCTTTTAATGCCCTCTCACTGCTTCTCAACAGATCAATTCGATCTTCTTCCAAATCCTTCATGGCGGACCTCGAAATCGCATCCGCAGCCAAATTCCGGTACCGGAGACTGCGGCACAGCGACGAATTGGAGTCGGCGATTGCGAGATCCAGACTAGGAGAACAGAGGAGGTTTGGAGGTTTCAGAATGCGAAGGGCTTCGATCGGGAGGAGGTTGAAGAAGCTCAGAATCCCTAGCCTCCGAAAGCTTTTCAGGAAATCGCGGCTGGTGAATGCCATGGGAGGCTCCATTTCCAAGGTTCTGAAGCGATTCAGAGATGGCGAAGCGCATTTGGGAGATCTTTTTGCTGGAAATTACTTGTTCCTTCAGATCAATCCAAGCTCCATCAAATGCCTTACGAACCACCATCAGTATCCCCTTCAAAATTTCCCCCCAACTTTCTCCCTCCCAGCTTTTACCTAA

Protein sequence

MLLSSTSFERRCKSLPPVAKPFNALNNLSLSLPFNALSLLLNRSIRSSSKSFMADLEIASAAKFRYRRLRHSDELESAIARSRLGEQRRFGGFRMRRASIGRRLKKLRIPSLRKLFRKSRLVNAMGGSISKVLKRFRDGEAHLGDLFAGNYLFLQINPSSIKCLTNHHQYPLQNFPPTFSLPAFT

Homology

[Close]

BLAST of CmaCh15G003680 vs. TrEMBL
Match: A0A0A0KSD1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G517900 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.5e-38
Identity = 98/153 (64.05%), Postives = 112/153 (73.20%), Query Frame = 1


Query: 53  MADLEIASAAKFRYRRLRHSDELESAIARSRLGE--------QRRFGGFRMRRA------ 112
           MADLE ASA KFRYRRLR+S+E E A  RSR G         +RR   FRMR        
Sbjct: 1   MADLETASAGKFRYRRLRYSEEFEEAFGRSREGGGEGIRKRWRRRRWWFRMRMRKGSSSL 60

Query: 113 SIGRRLKKLRIPSLRKLFRKS-RLVNAMGGSISKVLKRFRDGEAHLGDLFAGNYLFLQIN 172
           SIGRRLKKLRIPSLRKL R+  RLVNAM GSI+KV+KRFRDGEA+LGDLFAGNYLFLQ+N
Sbjct: 61  SIGRRLKKLRIPSLRKLLRRKWRLVNAMRGSIAKVVKRFRDGEAYLGDLFAGNYLFLQVN 120

Query: 173 PSSIKCLTNHHQ------YPLQNFPPTFSLPAF 185
           PSS+KCL NHH       + ++NFP T+SLP+F
Sbjct: 121 PSSMKCLKNHHHHQQQHGFDVRNFPQTYSLPSF 153

[Close]

BLAST of CmaCh15G003680 vs. TrEMBL
Match: I3SHD4_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 5.9e-19
Identity = 58/113 (51.33%), Postives = 81/113 (71.68%), Query Frame = 1


Query: 53  MADLEIASAAKFRYRRLRHSDELESAIARSRLGEQRRFGGFRMRRASIGRRLKKLRIPSL 112
           M++++IAS +KFRY+RL+H    E    R  +   + +  FR RR  I RR  +L+IPSL
Sbjct: 1   MSNIQIASVSKFRYQRLKHEGGYEIERDRVLIQRPKSWFRFRFRRIQIRRRF-RLKIPSL 60

Query: 113 RKLFRKS-RLVNAMGGSISKVLKRFRDGEAHLGDLFAGNYLFLQINPSSIKCL 165
           ++L+RK  RLV++M  S +KVLKRF+D + H GDLFAGNYLF+Q+NPSS+K L
Sbjct: 61  KRLWRKRVRLVSSMRLSYAKVLKRFKDNKVHFGDLFAGNYLFMQVNPSSLKYL 112

[Close]

BLAST of CmaCh15G003680 vs. TrEMBL
Match: I1MLS3_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_16G068200 PE=4 SV=2)

HSP 1 Score: 97.1 bits (240), Expect = 2.5e-17
Identity = 58/120 (48.33%), Postives = 82/120 (68.33%), Query Frame = 1


Query: 47  SSSKSFMAD-LEIASAAKFRYRRLRHSDELESAIARSRLGEQRRFGGFRMRRASIGRRLK 106
           +S KS M+  L++   +K RY+RLRH    +         E+R    FR RR  I RR +
Sbjct: 5   TSEKSTMSSQLQMVPLSKLRYQRLRHEKGWDDE------RERRSRSWFRFRRVPIRRRFR 64

Query: 107 KLRIPSLRKLFRK-SRLVNAMGGSISKVLKRFRDGEAHLGDLFAGNYLFLQINPSSIKCL 165
            L+IPSLR+L+RK +RLV++M  S +KV+KRF++G+ H GDLFAGNYLF+ +NP+S+KCL
Sbjct: 65  -LKIPSLRRLWRKRARLVSSMRISYAKVMKRFKEGQVHFGDLFAGNYLFMHVNPTSLKCL 117

[Close]

BLAST of CmaCh15G003680 vs. TrEMBL
Match: A0A0B2NXL2_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_039264 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 4.2e-17
Identity = 57/116 (49.14%), Postives = 78/116 (67.24%), Query Frame = 1


Query: 50  KSFMADLEIASAAKFRYRRLRHSDELESAIARSRLGEQRRFGGFRMRRASIGRRLKKLRI 109
           K  M+ L++    K RY+RLRH    +         E+R    FR RR  I RRL+ L+I
Sbjct: 8   KPTMSTLQMVPLGKLRYQRLRHEKGWDGE------RERRPRSWFRFRRVPIRRRLR-LKI 67

Query: 110 PSLRKLFRK-SRLVNAMGGSISKVLKRFRDGEAHLGDLFAGNYLFLQINPSSIKCL 165
            SLR+L+RK +RLV++M  S +KVLKRF++G+ H GDLFAGNYLF+ +NP+S+KCL
Sbjct: 68  SSLRRLWRKRARLVSSMRISYAKVLKRFKEGQVHFGDLFAGNYLFMHVNPASLKCL 116

[Close]

BLAST of CmaCh15G003680 vs. TrEMBL
Match: I1N7H1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_19G078800 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 4.2e-17
Identity = 57/116 (49.14%), Postives = 78/116 (67.24%), Query Frame = 1


Query: 50  KSFMADLEIASAAKFRYRRLRHSDELESAIARSRLGEQRRFGGFRMRRASIGRRLKKLRI 109
           K  M+ L++    K RY+RLRH    +         E+R    FR RR  I RRL+ L+I
Sbjct: 8   KPTMSTLQMVPLGKLRYQRLRHEKGWDGE------RERRPRSWFRFRRVPIRRRLR-LKI 67

Query: 110 PSLRKLFRK-SRLVNAMGGSISKVLKRFRDGEAHLGDLFAGNYLFLQINPSSIKCL 165
            SLR+L+RK +RLV++M  S +KVLKRF++G+ H GDLFAGNYLF+ +NP+S+KCL
Sbjct: 68  SSLRRLWRKRARLVSSMRISYAKVLKRFKEGQVHFGDLFAGNYLFMHVNPASLKCL 116

[Close]

BLAST of CmaCh15G003680 vs. TAIR10
Match: AT5G14410.1 (AT5G14410.1 unknown protein)

HSP 1 Score: 64.3 bits (155), Expect = 9.0e-11
Identity = 46/124 (37.10%), Postives = 65/124 (52.42%), Query Frame = 1


Query: 66  YRRLRHSDELESAIARSRLGEQRRFGGFRMRRA-SIGRRLK---KLRIPSLRKLFRKSRL 125
           Y+RL   D++     R R      F  +R +R  S+G R +   +++I  LR   RK   
Sbjct: 12  YKRLSLEDDVFGETTRRRSS----FYSYRFKRVVSLGGRRRIRVRVKIRRLRGFVRKK-- 71

Query: 126 VNAMGGSISKVLKRFRDGEAHLGDLFAGNYLFLQINPSSIKC---LTNHHQYPLQNFPPT 183
            N +   I K+LKR ++ ++H GDLFAGNYLF+Q+NPSS+          Q    NFP  
Sbjct: 72  ANRVKTGILKILKRLKESQSHFGDLFAGNYLFMQVNPSSLNAKYVFDKSFQGQNGNFPSR 129

[Close]

BLAST of CmaCh15G003680 vs. NCBI nr
Match: gi|778703543|ref|XP_011655383.1| (PREDICTED: uncharacterized protein LOC105435522 [Cucumis sativus])

HSP 1 Score: 166.8 bits (421), Expect = 3.6e-38
Identity = 98/153 (64.05%), Postives = 112/153 (73.20%), Query Frame = 1


Query: 53  MADLEIASAAKFRYRRLRHSDELESAIARSRLGE--------QRRFGGFRMRRA------ 112
           MADLE ASA KFRYRRLR+S+E E A  RSR G         +RR   FRMR        
Sbjct: 1   MADLETASAGKFRYRRLRYSEEFEEAFGRSREGGGEGIRKRWRRRRWWFRMRMRKGSSSL 60

Query: 113 SIGRRLKKLRIPSLRKLFRKS-RLVNAMGGSISKVLKRFRDGEAHLGDLFAGNYLFLQIN 172
           SIGRRLKKLRIPSLRKL R+  RLVNAM GSI+KV+KRFRDGEA+LGDLFAGNYLFLQ+N
Sbjct: 61  SIGRRLKKLRIPSLRKLLRRKWRLVNAMRGSIAKVVKRFRDGEAYLGDLFAGNYLFLQVN 120

Query: 173 PSSIKCLTNHHQ------YPLQNFPPTFSLPAF 185
           PSS+KCL NHH       + ++NFP T+SLP+F
Sbjct: 121 PSSMKCLKNHHHHQQQHGFDVRNFPQTYSLPSF 153

[Close]

BLAST of CmaCh15G003680 vs. NCBI nr
Match: gi|388503220|gb|AFK39676.1| (unknown [Lotus japonicus])

HSP 1 Score: 102.4 bits (254), Expect = 8.4e-19
Identity = 58/113 (51.33%), Postives = 81/113 (71.68%), Query Frame = 1


Query: 53  MADLEIASAAKFRYRRLRHSDELESAIARSRLGEQRRFGGFRMRRASIGRRLKKLRIPSL 112
           M++++IAS +KFRY+RL+H    E    R  +   + +  FR RR  I RR  +L+IPSL
Sbjct: 1   MSNIQIASVSKFRYQRLKHEGGYEIERDRVLIQRPKSWFRFRFRRIQIRRRF-RLKIPSL 60

Query: 113 RKLFRKS-RLVNAMGGSISKVLKRFRDGEAHLGDLFAGNYLFLQINPSSIKCL 165
           ++L+RK  RLV++M  S +KVLKRF+D + H GDLFAGNYLF+Q+NPSS+K L
Sbjct: 61  KRLWRKRVRLVSSMRLSYAKVLKRFKDNKVHFGDLFAGNYLFMQVNPSSLKYL 112

[Close]

BLAST of CmaCh15G003680 vs. NCBI nr
Match: gi|947057694|gb|KRH07100.1| (hypothetical protein GLYMA_16G068200 [Glycine max])

HSP 1 Score: 97.1 bits (240), Expect = 3.5e-17
Identity = 58/120 (48.33%), Postives = 82/120 (68.33%), Query Frame = 1


Query: 47  SSSKSFMAD-LEIASAAKFRYRRLRHSDELESAIARSRLGEQRRFGGFRMRRASIGRRLK 106
           +S KS M+  L++   +K RY+RLRH    +         E+R    FR RR  I RR +
Sbjct: 5   TSEKSTMSSQLQMVPLSKLRYQRLRHEKGWDDE------RERRSRSWFRFRRVPIRRRFR 64

Query: 107 KLRIPSLRKLFRK-SRLVNAMGGSISKVLKRFRDGEAHLGDLFAGNYLFLQINPSSIKCL 165
            L+IPSLR+L+RK +RLV++M  S +KV+KRF++G+ H GDLFAGNYLF+ +NP+S+KCL
Sbjct: 65  -LKIPSLRRLWRKRARLVSSMRISYAKVMKRFKEGQVHFGDLFAGNYLFMHVNPTSLKCL 117

[Close]

BLAST of CmaCh15G003680 vs. NCBI nr
Match: gi|734311187|gb|KHN00034.1| (hypothetical protein glysoja_039264 [Glycine soja])

HSP 1 Score: 96.3 bits (238), Expect = 6.0e-17
Identity = 57/116 (49.14%), Postives = 78/116 (67.24%), Query Frame = 1


Query: 50  KSFMADLEIASAAKFRYRRLRHSDELESAIARSRLGEQRRFGGFRMRRASIGRRLKKLRI 109
           K  M+ L++    K RY+RLRH    +         E+R    FR RR  I RRL+ L+I
Sbjct: 8   KPTMSTLQMVPLGKLRYQRLRHEKGWDGE------RERRPRSWFRFRRVPIRRRLR-LKI 67

Query: 110 PSLRKLFRK-SRLVNAMGGSISKVLKRFRDGEAHLGDLFAGNYLFLQINPSSIKCL 165
            SLR+L+RK +RLV++M  S +KVLKRF++G+ H GDLFAGNYLF+ +NP+S+KCL
Sbjct: 68  SSLRRLWRKRARLVSSMRISYAKVLKRFKEGQVHFGDLFAGNYLFMHVNPASLKCL 116

[Close]

BLAST of CmaCh15G003680 vs. NCBI nr
Match: gi|734392080|gb|KHN27571.1| (hypothetical protein glysoja_018683 [Glycine soja])

HSP 1 Score: 95.9 bits (237), Expect = 7.9e-17
Identity = 54/112 (48.21%), Postives = 77/112 (68.75%), Query Frame = 1


Query: 54  ADLEIASAAKFRYRRLRHSDELESAIARSRLGEQRRFGGFRMRRASIGRRLKKLRIPSLR 113
           + L++   +K RY+RLRH    +         E+R    FR RR  I RR + L+IPSLR
Sbjct: 3   SQLQMVPLSKLRYQRLRHEKGWDDE------RERRSRSWFRFRRVPIRRRFR-LKIPSLR 62

Query: 114 KLFRK-SRLVNAMGGSISKVLKRFRDGEAHLGDLFAGNYLFLQINPSSIKCL 165
           +L+RK +RLV++M  S +KV+KRF++G+ H GDLFAGNYLF+ +NP+S+KCL
Sbjct: 63  RLWRKRARLVSSMRISYAKVMKRFKEGQVHFGDLFAGNYLFMHVNPTSLKCL 107

The following BLAST results are available for this feature:

BLAST of CmaCh15G003680 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh15G003680 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KSD1_CUCSA	2.5e-38	64.05	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G517900 PE=4 SV=1	[more]
I3SHD4_LOTJA	5.9e-19	51.33	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]
I1MLS3_SOYBN	2.5e-17	48.33	Uncharacterized protein OS=Glycine max GN=GLYMA_16G068200 PE=4 SV=2	[more]
A0A0B2NXL2_GLYSO	4.2e-17	49.14	Uncharacterized protein OS=Glycine soja GN=glysoja_039264 PE=4 SV=1	[more]
I1N7H1_SOYBN	4.2e-17	49.14	Uncharacterized protein OS=Glycine max GN=GLYMA_19G078800 PE=4 SV=1	[more]

BLAST of CmaCh15G003680 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G14410.1	9.0e-11	37.10	unknown protein	[more]

BLAST of CmaCh15G003680 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778703543\|ref\|XP_011655383.1\|	3.6e-38	64.05	PREDICTED: uncharacterized protein LOC105435522 [Cucumis sativus]	[more]
gi\|388503220\|gb\|AFK39676.1\|	8.4e-19	51.33	unknown [Lotus japonicus]	[more]
gi\|947057694\|gb\|KRH07100.1\|	3.5e-17	48.33	hypothetical protein GLYMA_16G068200 [Glycine max]	[more]
gi\|734311187\|gb\|KHN00034.1\|	6.0e-17	49.14	hypothetical protein glysoja_039264 [Glycine soja]	[more]
gi\|734392080\|gb\|KHN27571.1\|	7.9e-17	48.21	hypothetical protein glysoja_018683 [Glycine soja]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006661	phosphatidylinositol biosynthetic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh15G003680.1	CmaCh15G003680.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36795	FAMILY NOT NAMED	coord: 43..164 score: 1.9
None	No IPR available	PANTHER	PTHR36795:SF2	SUBFAMILY NOT NAMED	coord: 43..164 score: 1.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh15G003680	Cucsa.011100	Cucumber (Gy14) v1	cgycmaB0542
CmaCh15G003680	Cla004635	Watermelon (97103) v1	cmawmB252
CmaCh15G003680	Csa5G517900	Cucumber (Chinese Long) v2	cmacuB300
CmaCh15G003680	MELO3C021597	Melon (DHL92) v3.5.1	cmameB251
CmaCh15G003680	ClCG09G019420	Watermelon (Charleston Gray)	cmawcgB244
CmaCh15G003680	CSPI05G18040	Wild cucumber (PI 183967)	cmacpiB305
CmaCh15G003680	CmoCh04G027990	Cucurbita moschata (Rifu)	cmacmoB308
CmaCh15G003680	Cp4.1LG01g23500	Cucurbita pepo (Zucchini)	cmacpeB317
CmaCh15G003680	MELO3C021597.2	Melon (DHL92) v3.6.1	cmamedB285
CmaCh15G003680	CsaV3_5G026960	Cucumber (Chinese Long) v3	cmacucB0354
CmaCh15G003680	Cla97C09G180880	Watermelon (97103) v2	cmawmbB322
CmaCh15G003680	Bhi06G000492	Wax gourd	cmawgoB0380
CmaCh15G003680	Carg02332	Silver-seed gourd	carcmaB0362
CmaCh15G003680	Carg04474	Silver-seed gourd	carcmaB0961

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh15G003680	CmaCh04G026700	Cucurbita maxima (Rimu)	cmacmaB324

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh15G003680	Cucurbita maxima (Rimu)	cmacmaB133
CmaCh15G003680	Cucurbita moschata (Rifu)	cmacmoB284
CmaCh15G003680	Cucurbita moschata (Rifu)	cmacmoB287
CmaCh15G003680	Cucurbita pepo (Zucchini)	cmacpeB305
CmaCh15G003680	Bottle gourd (USVL1VR-Ls)	cmalsiB272
CmaCh15G003680	Cucumber (Gy14) v2	cgybcmaB610
CmaCh15G003680	Silver-seed gourd	carcmaB0522