Carg04474 (gene) Silver-seed gourd

NameCarg04474
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionPlexin-D1 like
LocationCucurbita_argyrosperma_scaffold_032 : 602230 .. 602700 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCTCTCACTTCACTGCTTCTCTTCTCAAACTCAGCGAATCCGCCATGCCGGACCTCGACACAACCGCGCCGCCAGGCAAGTTCCGGTACCGGAGGCTGAGATACAGCGAGGAATTTGAGGAGGCGTTTGGAAGATCGAGGCGAGGAGAAGCGAGGAGGAGGAGGAGATTCGTCGGAAGATCGAAGCGGTGGTTCAGAATCAGAAGGGCTTCGATTGGGAGGAGGTTGAAGAAGCTCAGAGTTCCAAGCCTGAGAAAGCTGTTGAGAAGGAAATCGCGGCTGGTGACGGCCATGAGAGGCTCGATTGCGAAGGTTGTGAAGAGGTTTAGGGAAGGGGAAGCGTATTTGGGGGATCTTTTTGCTGGAAATTATTTGTTTCTTCAGGTGAATCCCAGCTCCATCAAATGCCATAAAAATCACCATTCTGCCCTTCAAAATTTCGCCCCAACTTATTCCCTCAACCTCTAA

mRNA sequence

ATGCCCTCTCACTTCACTGCTTCTCTTCTCAAACTCAGCGAATCCGCCATGCCGGACCTCGACACAACCGCGCCGCCAGGCAAGTTCCGGTACCGGAGGCTGAGATACAGCGAGGAATTTGAGGAGGCGTTTGGAAGATCGAGGCGAGGAGAAGCGAGGAGGAGGAGGAGATTCGTCGGAAGATCGAAGCGGTGGTTCAGAATCAGAAGGGCTTCGATTGGGAGGAGGTTGAAGAAGCTCAGAGTTCCAAGCCTGAGAAAGCTGTTGAGAAGGAAATCGCGGCTGGTGACGGCCATGAGAGGCTCGATTGCGAAGGTTGTGAAGAGGTTTAGGGAAGGGGAAGCGTATTTGGGGGATCTTTTTGCTGGAAATTATTTGTTTCTTCAGGTGAATCCCAGCTCCATCAAATGCCATAAAAATCACCATTCTGCCCTTCAAAATTTCGCCCCAACTTATTCCCTCAACCTCTAA

Coding sequence (CDS)

ATGCCCTCTCACTTCACTGCTTCTCTTCTCAAACTCAGCGAATCCGCCATGCCGGACCTCGACACAACCGCGCCGCCAGGCAAGTTCCGGTACCGGAGGCTGAGATACAGCGAGGAATTTGAGGAGGCGTTTGGAAGATCGAGGCGAGGAGAAGCGAGGAGGAGGAGGAGATTCGTCGGAAGATCGAAGCGGTGGTTCAGAATCAGAAGGGCTTCGATTGGGAGGAGGTTGAAGAAGCTCAGAGTTCCAAGCCTGAGAAAGCTGTTGAGAAGGAAATCGCGGCTGGTGACGGCCATGAGAGGCTCGATTGCGAAGGTTGTGAAGAGGTTTAGGGAAGGGGAAGCGTATTTGGGGGATCTTTTTGCTGGAAATTATTTGTTTCTTCAGGTGAATCCCAGCTCCATCAAATGCCATAAAAATCACCATTCTGCCCTTCAAAATTTCGCCCCAACTTATTCCCTCAACCTCTAA

Protein sequence

MPSHFTASLLKLSESAMPDLDTTAPPGKFRYRRLRYSEEFEEAFGRSRRGEARRRRRFVGRSKRWFRIRRASIGRRLKKLRVPSLRKLLRRKSRLVTAMRGSIAKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIKCHKNHHSALQNFAPTYSLNL
BLAST of Carg04474 vs. NCBI nr
Match: XP_022922294.1 (uncharacterized protein LOC111430312 [Cucurbita moschata])

HSP 1 Score: 299.7 bits (766), Expect = 5.9e-78
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0

Query: 1   MPSHFTASLLKLSESAMPDLDTTAPPGKFRYRRLRYSEEFEEAFGRSRRGEARRRRRFVG 60
           MPSHFTASLLKLSESAMPDLDTTAPPGKFRYRRLRYSEEFEEAFGRSRRGEARRRRRFVG
Sbjct: 1   MPSHFTASLLKLSESAMPDLDTTAPPGKFRYRRLRYSEEFEEAFGRSRRGEARRRRRFVG 60

Query: 61  RSKRWFRIRRASIGRRLKKLRVPSLRKLLRRKSRLVTAMRGSIAKVVKRFREGEAYLGDL 120
           RSKRWFRIRRASIGRRLKKLRVPSLRKLLRRKSRLVTAMRGSIAKVVKRFREGEAYLGDL
Sbjct: 61  RSKRWFRIRRASIGRRLKKLRVPSLRKLLRRKSRLVTAMRGSIAKVVKRFREGEAYLGDL 120

Query: 121 FAGNYLFLQVNPSSIKCHKNHHSALQNFAPTYSLNL 157
           FAGNYLFLQVNPSSIKCHKNHHSALQNFAPTYSLNL
Sbjct: 121 FAGNYLFLQVNPSSIKCHKNHHSALQNFAPTYSLNL 156

BLAST of Carg04474 vs. NCBI nr
Match: XP_023551709.1 (uncharacterized protein LOC111809563 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 255.8 bits (652), Expect = 9.8e-65
Identity = 136/140 (97.14%), Postives = 136/140 (97.14%), Query Frame = 0

Query: 17  MPDLDTTAPPGKFRYRRLRYSEEFEEAFGRSRRGEARRRRRFVGRSKRWFRIRRASIGRR 76
           MPDLDTTA PGKFRYRRLRYSEEFEEAFGRSR GE  RRRRFVGRSKRWFRIRRASIGRR
Sbjct: 1   MPDLDTTAAPGKFRYRRLRYSEEFEEAFGRSRGGE-ERRRRFVGRSKRWFRIRRASIGRR 60

Query: 77  LKKLRVPSLRKLLRRKSRLVTAMRGSIAKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIK 136
           LKKLRVPSLRKLLRRKSRLVTAMRGSIAKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIK
Sbjct: 61  LKKLRVPSLRKLLRRKSRLVTAMRGSIAKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIK 120

Query: 137 CHKNHHSALQNFAPTYSLNL 157
           CHKNHHSALQNFAPTYSLNL
Sbjct: 121 CHKNHHSALQNFAPTYSLNL 139

BLAST of Carg04474 vs. NCBI nr
Match: XP_022990096.1 (uncharacterized protein LOC111487096 [Cucurbita maxima])

HSP 1 Score: 200.3 bits (508), Expect = 4.9e-48
Identity = 111/140 (79.29%), Postives = 113/140 (80.71%), Query Frame = 0

Query: 17  MPDLDTTAPPGKFRYRRLRYSEEFEEAFGRSRRGEARRRRRFVGRSKRWFRIRRASIGRR 76
           MPDLDTTAPPGKFRYRRLRYSEEFEEAFGRSRRGE  R                      
Sbjct: 1   MPDLDTTAPPGKFRYRRLRYSEEFEEAFGRSRRGE-ERXXXXXXXXXXXXXXXXXXXXXX 60

Query: 77  LKKLRVPSLRKLLRRKSRLVTAMRGSIAKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIK 136
             KLRVPSLRKLLRRKSRLVTAM+GSI+KVVKRFREGEAYLGDLFAGNYLFLQVNPSSIK
Sbjct: 61  XXKLRVPSLRKLLRRKSRLVTAMKGSISKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIK 120

Query: 137 CHKNHHSALQNFAPTYSLNL 157
           CHKNHHSAL NFAPTYSLNL
Sbjct: 121 CHKNHHSALPNFAPTYSLNL 139

BLAST of Carg04474 vs. NCBI nr
Match: XP_022939385.1 (uncharacterized protein LOC111445317 [Cucurbita moschata])

HSP 1 Score: 168.7 bits (426), Expect = 1.6e-38
Identity = 101/143 (70.63%), Postives = 113/143 (79.02%), Query Frame = 0

Query: 13  SESAMPDLDTTAPPGKFRYRRLRYSEEFEEAFGRSRRGEARRRRRFVGRSKRWFRIRRAS 72
           S+S M DL+  A   KFRYRRLR+S+E E AF RSR GE   +RRF G     FR+RRAS
Sbjct: 49  SKSFMADLE-IASAAKFRYRRLRHSDELESAFARSRLGE---QRRFGG-----FRMRRAS 108

Query: 73  IGRRLKKLRVPSLRKLLRRKSRLVTAMRGSIAKVVKRFREGEAYLGDLFAGNYLFLQVNP 132
           IGRRLKKLR+PSLRKL  RKSRLV AM GSI+KV+KRFR+GEAYLGDLFAGNYLFLQ+NP
Sbjct: 109 IGRRLKKLRIPSLRKLF-RKSRLVNAMGGSISKVLKRFRDGEAYLGDLFAGNYLFLQINP 168

Query: 133 SSIKCHKNHHS-ALQNFAPTYSL 155
           SSIKC  NHH   LQNF PT+SL
Sbjct: 169 SSIKCLANHHQYPLQNFPPTFSL 181

BLAST of Carg04474 vs. NCBI nr
Match: XP_011655383.1 (PREDICTED: uncharacterized protein LOC105435522 [Cucumis sativus] >KGN51342.1 hypothetical protein Csa_5G517900 [Cucumis sativus])

HSP 1 Score: 163.7 bits (413), Expect = 5.0e-37
Identity = 103/151 (68.21%), Postives = 112/151 (74.17%), Query Frame = 0

Query: 17  MPDLDTTAPPGKFRYRRLRYSEEFEEAFGRSRR--GEARRRRRFVGRSKRWFRIRRA--- 76
           M DL+ TA  GKFRYRRLRYSEEFEEAFGRSR   GE  R+R          R+R+    
Sbjct: 1   MADLE-TASAGKFRYRRLRYSEEFEEAFGRSREGGGEGIRKRWRXXXXXXRMRMRKGSSS 60

Query: 77  -SIGRRLKKLRVPSLRKLLRRKSRLVTAMRGSIAKVVKRFREGEAYLGDLFAGNYLFLQV 136
            SIGRRLKKLR+PSLRKLLRRK RLV AMRGSIAKVVKRFR+GEAYLGDLFAGNYLFLQV
Sbjct: 61  LSIGRRLKKLRIPSLRKLLRRKWRLVNAMRGSIAKVVKRFRDGEAYLGDLFAGNYLFLQV 120

Query: 137 NPSSIKCHKN-------HHSALQNFAPTYSL 155
           NPSS+KC KN       H   ++NF  TYSL
Sbjct: 121 NPSSMKCLKNXXXXXXXHGFDVRNFPQTYSL 150

BLAST of Carg04474 vs. TAIR10
Match: AT5G14410.1 (unknown protein)

HSP 1 Score: 52.8 bits (125), Expect = 2.3e-07
Identity = 41/117 (35.04%), Postives = 68/117 (58.12%), Query Frame = 0

Query: 20  LDTTAPPGKFRYRRLRYSEEFEEAFGRSRRGEARRRRRFVGRSKRWFRIRRASIGRRLK- 79
           +D++       Y+RL      ++ FG +     RRR  F   S R+ R+      RR++ 
Sbjct: 1   MDSSPKITNLPYKRLSLE---DDVFGET----TRRRSSFY--SYRFKRVVSLGGRRRIRV 60

Query: 80  KLRVPSLRKLLRRKSRLVTAMRGSIAKVVKRFREGEAYLGDLFAGNYLFLQVNPSSI 136
           ++++  LR  +R+K+  V   +  I K++KR +E +++ GDLFAGNYLF+QVNPSS+
Sbjct: 61  RVKIRRLRGFVRKKANRV---KTGILKILKRLKESQSHFGDLFAGNYLFMQVNPSSL 105

BLAST of Carg04474 vs. TrEMBL
Match: tr|A0A0A0KSD1|A0A0A0KSD1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G517900 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 3.3e-37
Identity = 103/151 (68.21%), Postives = 112/151 (74.17%), Query Frame = 0

Query: 17  MPDLDTTAPPGKFRYRRLRYSEEFEEAFGRSRR--GEARRRRRFVGRSKRWFRIRRA--- 76
           M DL+ TA  GKFRYRRLRYSEEFEEAFGRSR   GE  R+R          R+R+    
Sbjct: 1   MADLE-TASAGKFRYRRLRYSEEFEEAFGRSREGGGEGIRKRWRXXXXXXRMRMRKGSSS 60

Query: 77  -SIGRRLKKLRVPSLRKLLRRKSRLVTAMRGSIAKVVKRFREGEAYLGDLFAGNYLFLQV 136
            SIGRRLKKLR+PSLRKLLRRK RLV AMRGSIAKVVKRFR+GEAYLGDLFAGNYLFLQV
Sbjct: 61  LSIGRRLKKLRIPSLRKLLRRKWRLVNAMRGSIAKVVKRFRDGEAYLGDLFAGNYLFLQV 120

Query: 137 NPSSIKCHKN-------HHSALQNFAPTYSL 155
           NPSS+KC KN       H   ++NF  TYSL
Sbjct: 121 NPSSMKCLKNXXXXXXXHGFDVRNFPQTYSL 150

BLAST of Carg04474 vs. TrEMBL
Match: tr|A0A1S4E272|A0A1S4E272_CUCME (uncharacterized protein LOC107991631 OS=Cucumis melo OX=3656 GN=LOC107991631 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.2e-34
Identity = 95/147 (64.63%), Postives = 103/147 (70.07%), Query Frame = 0

Query: 17  MPDLDTTAPPGKFRYRRLRYSEEFEEAFGRSRRGEARRRRRFVGRSKRWFRI-----RRA 76
           M DL+ TA  GKFRYRRLRYSEEFEEAFGRS                             
Sbjct: 1   MADLE-TASAGKFRYRRLRYSEEFEEAFGRSXXXXXXXXXXXXXXXXXXXXXXXXGSSSL 60

Query: 77  SIGRRLKKLRVPSLRKLLRRKSRLVTAMRGSIAKVVKRFREGEAYLGDLFAGNYLFLQVN 136
           SIGRRLKKLR+PSLRKL+RRK RLV AMRGSIAKV+KRFR+GEAYLGDLFAGNYLFLQVN
Sbjct: 61  SIGRRLKKLRIPSLRKLMRRKWRLVNAMRGSIAKVLKRFRDGEAYLGDLFAGNYLFLQVN 120

Query: 137 PSSIKCHKNHHSA----LQNFAPTYSL 155
           PSS+KC KNHH      ++NF  TYSL
Sbjct: 121 PSSMKCMKNHHQQHGFDVRNFTQTYSL 146

BLAST of Carg04474 vs. TrEMBL
Match: tr|I1N7H1|I1N7H1_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_19G078800 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.0e-17
Identity = 58/113 (51.33%), Postives = 79/113 (69.91%), Query Frame = 0

Query: 25  PPGKFRYRRLRYSEEFEEAFGRSRRGEARRRRRFVGRSKRWFRIRRASIGRRLKKLRVPS 84
           P GK RY+RLR+ + ++        GE  RR R       WFR RR  I RRL +L++ S
Sbjct: 18  PLGKLRYQRLRHEKGWD--------GERERRPR------SWFRFRRVPIRRRL-RLKISS 77

Query: 85  LRKLLRRKSRLVTAMRGSIAKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIKC 138
           LR+L R+++RLV++MR S AKV+KRF+EG+ + GDLFAGNYLF+ VNP+S+KC
Sbjct: 78  LRRLWRKRARLVSSMRISYAKVLKRFKEGQVHFGDLFAGNYLFMHVNPASLKC 115

BLAST of Carg04474 vs. TrEMBL
Match: tr|A0A0B2NXL2|A0A0B2NXL2_GLYSO (Uncharacterized protein OS=Glycine soja OX=3848 GN=glysoja_039264 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.0e-17
Identity = 58/113 (51.33%), Postives = 79/113 (69.91%), Query Frame = 0

Query: 25  PPGKFRYRRLRYSEEFEEAFGRSRRGEARRRRRFVGRSKRWFRIRRASIGRRLKKLRVPS 84
           P GK RY+RLR+ + ++        GE  RR R       WFR RR  I RRL +L++ S
Sbjct: 18  PLGKLRYQRLRHEKGWD--------GERERRPR------SWFRFRRVPIRRRL-RLKISS 77

Query: 85  LRKLLRRKSRLVTAMRGSIAKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIKC 138
           LR+L R+++RLV++MR S AKV+KRF+EG+ + GDLFAGNYLF+ VNP+S+KC
Sbjct: 78  LRRLWRKRARLVSSMRISYAKVLKRFKEGQVHFGDLFAGNYLFMHVNPASLKC 115

BLAST of Carg04474 vs. TrEMBL
Match: tr|I1MLS3|I1MLS3_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_16G068200 PE=4 SV=2)

HSP 1 Score: 98.6 bits (244), Expect = 1.3e-17
Identity = 58/124 (46.77%), Postives = 82/124 (66.13%), Query Frame = 0

Query: 14  ESAMPDLDTTAPPGKFRYRRLRYSEEFEEAFGRSRRGEARRRRRFVGRSKRWFRIRRASI 73
           +S M       P  K RY+RLR+ + +++            R R   RS+ WFR RR  I
Sbjct: 8   KSTMSSQLQMVPLSKLRYQRLRHEKGWDD-----------ERER---RSRSWFRFRRVPI 67

Query: 74  GRRLKKLRVPSLRKLLRRKSRLVTAMRGSIAKVVKRFREGEAYLGDLFAGNYLFLQVNPS 133
            RR  +L++PSLR+L R+++RLV++MR S AKV+KRF+EG+ + GDLFAGNYLF+ VNP+
Sbjct: 68  RRRF-RLKIPSLRRLWRKRARLVSSMRISYAKVMKRFKEGQVHFGDLFAGNYLFMHVNPT 116

Query: 134 SIKC 138
           S+KC
Sbjct: 128 SLKC 116

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022922294.15.9e-78100.00uncharacterized protein LOC111430312 [Cucurbita moschata][more]
XP_023551709.19.8e-6597.14uncharacterized protein LOC111809563 [Cucurbita pepo subsp. pepo][more]
XP_022990096.14.9e-4879.29uncharacterized protein LOC111487096 [Cucurbita maxima][more]
XP_022939385.11.6e-3870.63uncharacterized protein LOC111445317 [Cucurbita moschata][more]
XP_011655383.15.0e-3768.21PREDICTED: uncharacterized protein LOC105435522 [Cucumis sativus] >KGN51342.1 hy... [more]
Match NameE-valueIdentityDescription
AT5G14410.12.3e-0735.04unknown protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0KSD1|A0A0A0KSD1_CUCSA3.3e-3768.21Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G517900 PE=4 SV=1[more]
tr|A0A1S4E272|A0A1S4E272_CUCME1.2e-3464.63uncharacterized protein LOC107991631 OS=Cucumis melo OX=3656 GN=LOC107991631 PE=... [more]
tr|I1N7H1|I1N7H1_SOYBN1.0e-1751.33Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_19G078800 PE=4 SV=1[more]
tr|A0A0B2NXL2|A0A0B2NXL2_GLYSO1.0e-1751.33Uncharacterized protein OS=Glycine soja OX=3848 GN=glysoja_039264 PE=4 SV=1[more]
tr|I1MLS3|I1MLS3_SOYBN1.3e-1746.77Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_16G068200 PE=4 SV=2[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg04474-RACarg04474-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36795:SF2SUBFAMILY NOT NAMEDcoord: 22..148
NoneNo IPR availablePANTHERPTHR36795FAMILY NOT NAMEDcoord: 22..148

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg04474Carg02332Silver-seed gourdcarcarB306