CmaCh04G026700 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G026700
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_231
Location	Cma_Chr04 : 18128333 .. 18128752 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGGACCTCGACACCACCGCGCCGCCCGGCAAGTTCCGGTACCGGAGGCTGAGATACAGCGAGGAATTTGAGGAGGCGTTTGGAAGATCGAGACGAGGAGAAGAGAGGAGGAGGAGATTTGTAGGAAGGTCGAAGCGGTGGTTCAAAATCAGAAGGGCTTCGATTGGGAGGAGGTTGAAGAAACTCAGAGTTCCTAGCCTGAGAAAGCTGTTGAGAAGGAAATCGCGGCTGGTGACGGCCATGAAAGGCTCGATTTCGAAGGTTGTGAAGAGGTTTAGGGAAGGCGAAGCGTATTTGGGGGATCTTTTTGCTGGAAATTATTTGTTCCTTCAGGTGAATCCCAGCTCCATCAAATGCCATAAAAATCACCATTCTGCCCTTCCAAATTTCGCCCCAACTTATTCCCTCAACCTCTAA

mRNA sequence

ATGCCGGACCTCGACACCACCGCGCCGCCCGGCAAGTTCCGGTACCGGAGGCTGAGATACAGCGAGGAATTTGAGGAGGCGTTTGGAAGATCGAGACGAGGAGAAGAGAGGAGGAGGAGATTTGTAGGAAGGTCGAAGCGGTGGTTCAAAATCAGAAGGGCTTCGATTGGGAGGAGGTTGAAGAAACTCAGAGTTCCTAGCCTGAGAAAGCTGTTGAGAAGGAAATCGCGGCTGGTGACGGCCATGAAAGGCTCGATTTCGAAGGTTGTGAAGAGGTTTAGGGAAGGCGAAGCGTATTTGGGGGATCTTTTTGCTGGAAATTATTTGTTCCTTCAGGTGAATCCCAGCTCCATCAAATGCCATAAAAATCACCATTCTGCCCTTCCAAATTTCGCCCCAACTTATTCCCTCAACCTCTAA

Coding sequence (CDS)

ATGCCGGACCTCGACACCACCGCGCCGCCCGGCAAGTTCCGGTACCGGAGGCTGAGATACAGCGAGGAATTTGAGGAGGCGTTTGGAAGATCGAGACGAGGAGAAGAGAGGAGGAGGAGATTTGTAGGAAGGTCGAAGCGGTGGTTCAAAATCAGAAGGGCTTCGATTGGGAGGAGGTTGAAGAAACTCAGAGTTCCTAGCCTGAGAAAGCTGTTGAGAAGGAAATCGCGGCTGGTGACGGCCATGAAAGGCTCGATTTCGAAGGTTGTGAAGAGGTTTAGGGAAGGCGAAGCGTATTTGGGGGATCTTTTTGCTGGAAATTATTTGTTCCTTCAGGTGAATCCCAGCTCCATCAAATGCCATAAAAATCACCATTCTGCCCTTCCAAATTTCGCCCCAACTTATTCCCTCAACCTCTAA

Protein sequence

MPDLDTTAPPGKFRYRRLRYSEEFEEAFGRSRRGEERRRRFVGRSKRWFKIRRASIGRRLKKLRVPSLRKLLRRKSRLVTAMKGSISKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIKCHKNHHSALPNFAPTYSLNL

Homology

[Close]

BLAST of CmaCh04G026700 vs. TrEMBL
Match: A0A0A0KSD1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G517900 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.7e-39
Identity = 104/152 (68.42%), Postives = 116/152 (76.32%), Query Frame = 1


Query: 1   MPDLDTTAPPGKFRYRRLRYSEEFEEAFGRSRRG--EERRRRFVGRSKRWFKIRRA---- 60
           M DL+T A  GKFRYRRLRYSEEFEEAFGRSR G  E  R+R+  R + WF++R      
Sbjct: 1   MADLET-ASAGKFRYRRLRYSEEFEEAFGRSREGGGEGIRKRW-RRRRWWFRMRMRKGSS 60

Query: 61  --SIGRRLKKLRVPSLRKLLRRKSRLVTAMKGSISKVVKRFREGEAYLGDLFAGNYLFLQ 120
             SIGRRLKKLR+PSLRKLLRRK RLV AM+GSI+KVVKRFR+GEAYLGDLFAGNYLFLQ
Sbjct: 61  SLSIGRRLKKLRIPSLRKLLRRKWRLVNAMRGSIAKVVKRFRDGEAYLGDLFAGNYLFLQ 120

Query: 121 VNPSSIKCHKNHHS-------ALPNFAPTYSL 138
           VNPSS+KC KNHH         + NF  TYSL
Sbjct: 121 VNPSSMKCLKNHHHHQQQHGFDVRNFPQTYSL 150

[Close]

BLAST of CmaCh04G026700 vs. TrEMBL
Match: A0A0B2R0T3_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_018683 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.1e-17
Identity = 54/112 (48.21%), Postives = 80/112 (71.43%), Query Frame = 1


Query: 9   PPGKFRYRRLRYSEEFEEAFGRSRRGEERRRRFVGRSKRWFKIRRASIGRRLKKLRVPSL 68
           P  K RY+RLR+ + +++         ER RR    S+ WF+ RR  I RR  +L++PSL
Sbjct: 9   PLSKLRYQRLRHEKGWDD---------ERERR----SRSWFRFRRVPIRRRF-RLKIPSL 68

Query: 69  RKLLRRKSRLVTAMKGSISKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIKC 121
           R+L R+++RLV++M+ S +KV+KRF+EG+ + GDLFAGNYLF+ VNP+S+KC
Sbjct: 69  RRLWRKRARLVSSMRISYAKVMKRFKEGQVHFGDLFAGNYLFMHVNPTSLKC 106

[Close]

BLAST of CmaCh04G026700 vs. TrEMBL
Match: I1MLS3_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_16G068200 PE=4 SV=2)

HSP 1 Score: 97.8 bits (242), Expect = 1.1e-17
Identity = 54/112 (48.21%), Postives = 80/112 (71.43%), Query Frame = 1


Query: 9   PPGKFRYRRLRYSEEFEEAFGRSRRGEERRRRFVGRSKRWFKIRRASIGRRLKKLRVPSL 68
           P  K RY+RLR+ + +++         ER RR    S+ WF+ RR  I RR  +L++PSL
Sbjct: 19  PLSKLRYQRLRHEKGWDD---------ERERR----SRSWFRFRRVPIRRRF-RLKIPSL 78

Query: 69  RKLLRRKSRLVTAMKGSISKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIKC 121
           R+L R+++RLV++M+ S +KV+KRF+EG+ + GDLFAGNYLF+ VNP+S+KC
Sbjct: 79  RRLWRKRARLVSSMRISYAKVMKRFKEGQVHFGDLFAGNYLFMHVNPTSLKC 116

[Close]

BLAST of CmaCh04G026700 vs. TrEMBL
Match: A0A0B2NXL2_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_039264 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.4e-17
Identity = 54/112 (48.21%), Postives = 79/112 (70.54%), Query Frame = 1


Query: 9   PPGKFRYRRLRYSEEFEEAFGRSRRGEERRRRFVGRSKRWFKIRRASIGRRLKKLRVPSL 68
           P GK RY+RLR+ + ++        GE  RR      + WF+ RR  I RRL +L++ SL
Sbjct: 18  PLGKLRYQRLRHEKGWD--------GERERR-----PRSWFRFRRVPIRRRL-RLKISSL 77

Query: 69  RKLLRRKSRLVTAMKGSISKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIKC 121
           R+L R+++RLV++M+ S +KV+KRF+EG+ + GDLFAGNYLF+ VNP+S+KC
Sbjct: 78  RRLWRKRARLVSSMRISYAKVLKRFKEGQVHFGDLFAGNYLFMHVNPASLKC 115

[Close]

BLAST of CmaCh04G026700 vs. TrEMBL
Match: K7MX61_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.4e-17
Identity = 54/112 (48.21%), Postives = 79/112 (70.54%), Query Frame = 1


Query: 9   PPGKFRYRRLRYSEEFEEAFGRSRRGEERRRRFVGRSKRWFKIRRASIGRRLKKLRVPSL 68
           P GK RY+RLR+ + ++        GE  RR      + WF+ RR  I RRL +L++ SL
Sbjct: 94  PLGKLRYQRLRHEKGWD--------GERERR-----PRSWFRFRRVPIRRRL-RLKISSL 153

Query: 69  RKLLRRKSRLVTAMKGSISKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIKC 121
           R+L R+++RLV++M+ S +KV+KRF+EG+ + GDLFAGNYLF+ VNP+S+KC
Sbjct: 154 RRLWRKRARLVSSMRISYAKVLKRFKEGQVHFGDLFAGNYLFMHVNPASLKC 191

[Close]

BLAST of CmaCh04G026700 vs. TAIR10
Match: AT5G14410.1 (AT5G14410.1 unknown protein)

HSP 1 Score: 55.8 bits (133), Expect = 2.4e-08
Identity = 36/86 (41.86%), Postives = 56/86 (65.12%), Query Frame = 1


Query: 34  GEERRRRFVGRSKRWFKIRRASIGRRLK-KLRVPSLRKLLRRKSRLVTAMKGSISKVVKR 93
           GE  RRR    S R+ ++      RR++ ++++  LR  +R+K+  V   K  I K++KR
Sbjct: 23  GETTRRRSSFYSYRFKRVVSLGGRRRIRVRVKIRRLRGFVRKKANRV---KTGILKILKR 82

Query: 94  FREGEAYLGDLFAGNYLFLQVNPSSI 119
            +E +++ GDLFAGNYLF+QVNPSS+
Sbjct: 83  LKESQSHFGDLFAGNYLFMQVNPSSL 105

[Close]

BLAST of CmaCh04G026700 vs. NCBI nr
Match: gi|778703543|ref|XP_011655383.1| (PREDICTED: uncharacterized protein LOC105435522 [Cucumis sativus])

HSP 1 Score: 170.2 bits (430), Expect = 2.5e-39
Identity = 104/152 (68.42%), Postives = 116/152 (76.32%), Query Frame = 1


Query: 1   MPDLDTTAPPGKFRYRRLRYSEEFEEAFGRSRRG--EERRRRFVGRSKRWFKIRRA---- 60
           M DL+T A  GKFRYRRLRYSEEFEEAFGRSR G  E  R+R+  R + WF++R      
Sbjct: 1   MADLET-ASAGKFRYRRLRYSEEFEEAFGRSREGGGEGIRKRW-RRRRWWFRMRMRKGSS 60

Query: 61  --SIGRRLKKLRVPSLRKLLRRKSRLVTAMKGSISKVVKRFREGEAYLGDLFAGNYLFLQ 120
             SIGRRLKKLR+PSLRKLLRRK RLV AM+GSI+KVVKRFR+GEAYLGDLFAGNYLFLQ
Sbjct: 61  SLSIGRRLKKLRIPSLRKLLRRKWRLVNAMRGSIAKVVKRFRDGEAYLGDLFAGNYLFLQ 120

Query: 121 VNPSSIKCHKNHHS-------ALPNFAPTYSL 138
           VNPSS+KC KNHH         + NF  TYSL
Sbjct: 121 VNPSSMKCLKNHHHHQQQHGFDVRNFPQTYSL 150

[Close]

BLAST of CmaCh04G026700 vs. NCBI nr
Match: gi|947057694|gb|KRH07100.1| (hypothetical protein GLYMA_16G068200 [Glycine max])

HSP 1 Score: 97.8 bits (242), Expect = 1.6e-17
Identity = 54/112 (48.21%), Postives = 80/112 (71.43%), Query Frame = 1


Query: 9   PPGKFRYRRLRYSEEFEEAFGRSRRGEERRRRFVGRSKRWFKIRRASIGRRLKKLRVPSL 68
           P  K RY+RLR+ + +++         ER RR    S+ WF+ RR  I RR  +L++PSL
Sbjct: 19  PLSKLRYQRLRHEKGWDD---------ERERR----SRSWFRFRRVPIRRRF-RLKIPSL 78

Query: 69  RKLLRRKSRLVTAMKGSISKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIKC 121
           R+L R+++RLV++M+ S +KV+KRF+EG+ + GDLFAGNYLF+ VNP+S+KC
Sbjct: 79  RRLWRKRARLVSSMRISYAKVMKRFKEGQVHFGDLFAGNYLFMHVNPTSLKC 116

[Close]

BLAST of CmaCh04G026700 vs. NCBI nr
Match: gi|734392080|gb|KHN27571.1| (hypothetical protein glysoja_018683 [Glycine soja])

HSP 1 Score: 97.8 bits (242), Expect = 1.6e-17
Identity = 54/112 (48.21%), Postives = 80/112 (71.43%), Query Frame = 1


Query: 9   PPGKFRYRRLRYSEEFEEAFGRSRRGEERRRRFVGRSKRWFKIRRASIGRRLKKLRVPSL 68
           P  K RY+RLR+ + +++         ER RR    S+ WF+ RR  I RR  +L++PSL
Sbjct: 9   PLSKLRYQRLRHEKGWDD---------ERERR----SRSWFRFRRVPIRRRF-RLKIPSL 68

Query: 69  RKLLRRKSRLVTAMKGSISKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIKC 121
           R+L R+++RLV++M+ S +KV+KRF+EG+ + GDLFAGNYLF+ VNP+S+KC
Sbjct: 69  RRLWRKRARLVSSMRISYAKVMKRFKEGQVHFGDLFAGNYLFMHVNPTSLKC 106

[Close]

BLAST of CmaCh04G026700 vs. NCBI nr
Match: gi|571555341|ref|XP_006604105.1| (PREDICTED: uncharacterized protein LOC102659553 [Glycine max])

HSP 1 Score: 96.7 bits (239), Expect = 3.5e-17
Identity = 54/112 (48.21%), Postives = 79/112 (70.54%), Query Frame = 1


Query: 9   PPGKFRYRRLRYSEEFEEAFGRSRRGEERRRRFVGRSKRWFKIRRASIGRRLKKLRVPSL 68
           P GK RY+RLR+ + ++        GE  RR      + WF+ RR  I RRL +L++ SL
Sbjct: 94  PLGKLRYQRLRHEKGWD--------GERERR-----PRSWFRFRRVPIRRRL-RLKISSL 153

Query: 69  RKLLRRKSRLVTAMKGSISKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIKC 121
           R+L R+++RLV++M+ S +KV+KRF+EG+ + GDLFAGNYLF+ VNP+S+KC
Sbjct: 154 RRLWRKRARLVSSMRISYAKVLKRFKEGQVHFGDLFAGNYLFMHVNPASLKC 191

[Close]

BLAST of CmaCh04G026700 vs. NCBI nr
Match: gi|1012360399|gb|KYP71583.1| (hypothetical protein KK1_010848 [Cajanus cajan])

HSP 1 Score: 96.7 bits (239), Expect = 3.5e-17
Identity = 55/112 (49.11%), Postives = 77/112 (68.75%), Query Frame = 1


Query: 9   PPGKFRYRRLRYSEEFEEAFGRSRRGEERRRRFVGRSKRWFKIRRASIGRRLKKLRVPSL 68
           P GK RY++LR+     E         ER +    R K WF+ RR  I RR  +L++PSL
Sbjct: 3   PLGKLRYQKLRHENVSVE---------ERDKVSQIRPKSWFRFRRVPIRRRF-RLKIPSL 62

Query: 69  RKLLRRKSRLVTAMKGSISKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIKC 121
           R+L R+++RLV++M+ S +KVVKRF+EG+ + GDLFAGNYLF+ VNP+S+KC
Sbjct: 63  RRLWRKRARLVSSMRISYAKVVKRFKEGQVHFGDLFAGNYLFMHVNPTSLKC 104

The following BLAST results are available for this feature:

BLAST of CmaCh04G026700 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh04G026700 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KSD1_CUCSA	1.7e-39	68.42	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G517900 PE=4 SV=1	[more]
A0A0B2R0T3_GLYSO	1.1e-17	48.21	Uncharacterized protein OS=Glycine soja GN=glysoja_018683 PE=4 SV=1	[more]
I1MLS3_SOYBN	1.1e-17	48.21	Uncharacterized protein OS=Glycine max GN=GLYMA_16G068200 PE=4 SV=2	[more]
A0A0B2NXL2_GLYSO	2.4e-17	48.21	Uncharacterized protein OS=Glycine soja GN=glysoja_039264 PE=4 SV=1	[more]
K7MX61_SOYBN	2.4e-17	48.21	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]

BLAST of CmaCh04G026700 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G14410.1	2.4e-08	41.86	unknown protein	[more]

BLAST of CmaCh04G026700 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778703543\|ref\|XP_011655383.1\|	2.5e-39	68.42	PREDICTED: uncharacterized protein LOC105435522 [Cucumis sativus]	[more]
gi\|947057694\|gb\|KRH07100.1\|	1.6e-17	48.21	hypothetical protein GLYMA_16G068200 [Glycine max]	[more]
gi\|734392080\|gb\|KHN27571.1\|	1.6e-17	48.21	hypothetical protein glysoja_018683 [Glycine soja]	[more]
gi\|571555341\|ref\|XP_006604105.1\|	3.5e-17	48.21	PREDICTED: uncharacterized protein LOC102659553 [Glycine max]	[more]
gi\|1012360399\|gb\|KYP71583.1\|	3.5e-17	49.11	hypothetical protein KK1_010848 [Cajanus cajan]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006661	phosphatidylinositol biosynthetic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G026700.1	CmaCh04G026700.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36795	FAMILY NOT NAMED	coord: 5..120 score: 6.8
None	No IPR available	PANTHER	PTHR36795:SF2	SUBFAMILY NOT NAMED	coord: 5..120 score: 6.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G026700	Cucsa.011100	Cucumber (Gy14) v1	cgycmaB0543
CmaCh04G026700	Cla004635	Watermelon (97103) v1	cmawmB652
CmaCh04G026700	Csa5G517900	Cucumber (Chinese Long) v2	cmacuB725
CmaCh04G026700	MELO3C021597	Melon (DHL92) v3.5.1	cmameB634
CmaCh04G026700	ClCG09G019420	Watermelon (Charleston Gray)	cmawcgB608
CmaCh04G026700	CSPI05G18040	Wild cucumber (PI 183967)	cmacpiB732
CmaCh04G026700	CmoCh04G027990	Cucurbita moschata (Rifu)	cmacmoB729
CmaCh04G026700	Cp4.1LG01g23500	Cucurbita pepo (Zucchini)	cmacpeB721
CmaCh04G026700	MELO3C021597.2	Melon (DHL92) v3.6.1	cmamedB720
CmaCh04G026700	CsaV3_5G026960	Cucumber (Chinese Long) v3	cmacucB0862
CmaCh04G026700	Cla97C09G180880	Watermelon (97103) v2	cmawmbB797
CmaCh04G026700	Bhi06G000492	Wax gourd	cmawgoB0839
CmaCh04G026700	Carg02332	Silver-seed gourd	carcmaB0374
CmaCh04G026700	Carg04474	Silver-seed gourd	carcmaB0967

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh04G026700	CmaCh15G003680	Cucurbita maxima (Rimu)	cmacmaB324

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G026700	Cucurbita moschata (Rifu)	cmacmoB677
CmaCh04G026700	Cucurbita moschata (Rifu)	cmacmoB684
CmaCh04G026700	Cucurbita moschata (Rifu)	cmacmoB692
CmaCh04G026700	Cucurbita pepo (Zucchini)	cmacpeB705
CmaCh04G026700	Cucurbita pepo (Zucchini)	cmacpeB747
CmaCh04G026700	Bottle gourd (USVL1VR-Ls)	cmalsiB651
CmaCh04G026700	Cucumber (Gy14) v2	cgybcmaB649
CmaCh04G026700	Silver-seed gourd	carcmaB0523
CmaCh04G026700	Silver-seed gourd	carcmaB0609
CmaCh04G026700	Cucurbita maxima (Rimu)	cmacmaB164
CmaCh04G026700	Cucurbita maxima (Rimu)	cmacmaB275
CmaCh04G026700	Cucurbita maxima (Rimu)	cmacmaB409