Cp4.1LG01g21160 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g21160
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionU6 snRNA-associated Sm-like protein LSm3
LocationCp4.1LG01 : 17890615 .. 17892719 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAATATTATTGGATCCTAAAATACGTGGGTCGGGTCGGCCTTAAATACAGGGGTGGACCGGTGACTGGGAATCGGAATTATAAACCTCAGTATTTGGTTCGTGAATTTCAGAGCTTCGAGAGATCGAAAATGGCGACCGAGGAAGAAAGCACTGTCAAGGAGCCGTTGGATCTCATTAGGTTGAGTCTTGACGAGCGCATTTACGTCAAGCTTCGCTCTGACCGCGAACTCCGTGGGAAGCTCCATGTATTATACTCATCCCCTTCGATTGATTCTTATCTTTCCCTTATATCTCTTCTGTTTTCTTTCACTAATGATGAATCGACTGCCATCACTTGTTTGTTTTTTCAATAAATTTTTATCAAATTGGTAGTTTGGGAATTAGGGTTTTGTTATTGTTCGAGTTTCTTGATGGATTTCTCTTGAAATTTGCTTACGCTCATTATGGCGACATCTTAGTTTCTTCCGATTAGAAATTACCCCTTTATGGGAATGGAGTGGCATGAAATTGGAGGATGTTCCATATTATCCATGCCAATTTACCATTATGAATGTGTTTCTTCTACCCATAGATTACAATATCAAGGCCCAAGTCTGCTAGTTATTGATTCTAAAACAAATATGGTCCATTTTTTGGATTTTTTTGGTACTGACGGGTTTCTTGGAGCTACATTTTCTCATTTAGTAGTTAGTAATGATGTTCTAAGTGGAGACCTTGTTTTTTTAACAAACCACTGTTGCAATGCCCTGTAGATTGTGACACACTCATCTACATGATGTTGAATATGATCAATAACTGACCTGTTGACTCTTGTATTGCATTTCTAGTTTTGAGATAACATAGTGAATGGAAAATTTTCAAGCTTTGAAACGTTTCTTCATTTCTATTATCGATTTCTGGCTCTCTTGCTTTGCAGGCCTATGATCAGCATCTAAATATGATTCTTGGTGATGTTGAAGAAATTGTTACCACAGTTGAAATTGATGATGAGACTTATGAAGAGATAGTTCGGGTATGATCATTTTCTCGCTCCCACTCCCGATAAAATAGGAGAATTATTCATAGGAAATAGAGTCTGCGAGTCTTGCACGAGGAATGTTTGTGAAAATCTTGGTATTTACTCGAAGCATTCAGTTTCGTGCTATAAAATAGATACATACCACGCACAAGAGTCCATTCCATAAACACTTAATTCACTAACAAAGTGGAAGATAGGTTTGAATACTCTTAAATAGGTATCATTTTCAAGTAAACCATGTGGGCTTTTAGACGTGAACACTGGCTTACTAGTGAAGTATTGTGTTTCTAACGGACAGAAAATACATATAGCTCAAACGTTTGAAGTTTCAAACTAAAGGAAAGGAAGAAAAGTATACCCGGAGTCCCTTAAGCTTGAGTCTATATCCATACTTGTTATGTTAAGTTGAGTATGATATCTCTTGTATGTACTTCAATGGAGATTTGGTATATTTATTGATTTTCTTTTCCAGACATCCAGGCGTACGGTCCCGTTTCTTTTCGTTAGAGGAGATGGTGTCATATTGGTTTCTCCTCCGCTGAGGACTGTTTAAGTTTTGCATTGGAAGTTCACTTGTGTTCATCCTTAATGGGAAGTTCTTATTCATCTCTCTACTTGATTTACTGAAGCTGAAAAGTTTGAAGATCCAAAATTTAGAAACATCAAGTACTTGACCTCGTTTATAGAATAGCTCCTTCATTAGTTGATATGCATGTTGTATTTTGTTATGTTAGAACAGACAACTTGTTAGTTGCTTTTGATATATTTGAGTCTTTAGCCGTAGTATTTGATATTGTCATTGGCTGCATTATTTGAATGGCTTTAGGTTTTACATGTAAGGCCAAGTAAGGACAACTCGATATTATGCATCTAAGCCAGAGTTGTTATGAAGCATCGCTTGTTTTGTTTTGTTTTTGAAAATTTTGTTTTCATCCTCCCTTACTGAAATGCTTGTACTCGTACGTTGCGTTGTTGAAGTCGTTTGTTTTTATAAAATAGTTGAAAAGTTCTTATGTATTTGTGAATGAGTATCATGAATCGATCTATCGTGTTGCTAACTTACCCCAATTTAGCTTTGGAACTA

mRNA sequence

AAAAATATTATTGGATCCTAAAATACGTGGGTCGGGTCGGCCTTAAATACAGGGGTGGACCGGTGACTGGGAATCGGAATTATAAACCTCAGTATTTGGTTCGTGAATTTCAGAGCTTCGAGAGATCGAAAATGGCGACCGAGGAAGAAAGCACTGTCAAGGAGCCGTTGGATCTCATTAGGTTGAGTCTTGACGAGCGCATTTACGTCAAGCTTCGCTCTGACCGCGAACTCCGTGGGAAGCTCCATGCCTATGATCAGCATCTAAATATGATTCTTGGTGATGTTGAAGAAATTGTTACCACAGTTGAAATTGATGATGAGACTTATGAAGAGATAGTTCGGACATCCAGGCGTACGGTCCCGTTTCTTTTCGTTAGAGGAGATGGTGTCATATTGGTTTCTCCTCCGCTGAGGACTGTTTAAGTTTTGCATTGGAAGTTCACTTGTGTTCATCCTTAATGGGAAGTTCTTATTCATCTCTCTACTTGATTTACTGAAGCTGAAAAGTTTGAAGATCCAAAATTTAGAAACATCAAGTACTTGACCTCGTTTATAGAATAGCTCCTTCATTAGTTGATATGCATGTTGTATTTTGTTATGTTAGAACAGACAACTTGTTAGTTGCTTTTGATATATTTGAGTCTTTAGCCGTAGTATTTGATATTGTCATTGGCTGCATTATTTGAATGGCTTTAGGTTTTACATGTAAGGCCAAGTAAGGACAACTCGATATTATGCATCTAAGCCAGAGTTGTTATGAAGCATCGCTTGTTTTGTTTTGTTTTTGAAAATTTTGTTTTCATCCTCCCTTACTGAAATGCTTGTACTCGTACGTTGCGTTGTTGAAGTCGTTTGTTTTTATAAAATAGTTGAAAAGTTCTTATGTATTTGTGAATGAGTATCATGAATCGATCTATCGTGTTGCTAACTTACCCCAATTTAGCTTTGGAACTA

Coding sequence (CDS)

ATGGCGACCGAGGAAGAAAGCACTGTCAAGGAGCCGTTGGATCTCATTAGGTTGAGTCTTGACGAGCGCATTTACGTCAAGCTTCGCTCTGACCGCGAACTCCGTGGGAAGCTCCATGCCTATGATCAGCATCTAAATATGATTCTTGGTGATGTTGAAGAAATTGTTACCACAGTTGAAATTGATGATGAGACTTATGAAGAGATAGTTCGGACATCCAGGCGTACGGTCCCGTTTCTTTTCGTTAGAGGAGATGGTGTCATATTGGTTTCTCCTCCGCTGAGGACTGTTTAA

Protein sequence

MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV
Homology
[Close]
BLAST of Cp4.1LG01g21160 vs. Swiss-Prot
Match: LSM3A_ARATH (Sm-like protein LSM3A OS=Arabidopsis thaliana GN=LSM3A PE=1 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 1.3e-42
Identity = 83/96 (86.46%), Postives = 95/96 (98.96%), Query Frame = 1 

Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
          M+ EE++TV+EPLDLIRLS++ERIYVKLRSDRELRGKLHA+DQHLNMILGDVEE++TT+E
Sbjct: 1  MSVEEDATVREPLDLIRLSIEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT++RTVPFLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTKRTVPFLFVRGDGVILVSPPLRT 96

[Close]
BLAST of Cp4.1LG01g21160 vs. Swiss-Prot
Match: LSM3B_ARATH (Sm-like protein LSM3B OS=Arabidopsis thaliana GN=LSM3B PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.8e-42
Identity = 85/96 (88.54%), Postives = 93/96 (96.88%), Query Frame = 1 

Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
          M+ EEE+TV+EPLDLIRLSLDERIYVKLRSDRELRGKLHA+DQHLNMILGDVEE +TTVE
Sbjct: 1  MSGEEEATVREPLDLIRLSLDERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT++RT+ FLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTKRTIEFLFVRGDGVILVSPPLRT 96

[Close]
BLAST of Cp4.1LG01g21160 vs. Swiss-Prot
Match: LSM3_HUMAN (U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens GN=LSM3 PE=1 SV=2)

HSP 1 Score: 152.1 bits (383), Expect = 3.0e-36
Identity = 71/89 (79.78%), Postives = 85/89 (95.51%), Query Frame = 1 

Query: 7   STVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETY 66
           +TV+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE VTT+EID+ETY
Sbjct: 12  NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETY 71

Query: 67  EEIVRTSRRTVPFLFVRGDGVILVSPPLR 96
           EEI ++++R +P LFVRGDGV+LV+PPLR
Sbjct: 72  EEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100

[Close]
BLAST of Cp4.1LG01g21160 vs. Swiss-Prot
Match: LSM3_BOVIN (U6 snRNA-associated Sm-like protein LSm3 OS=Bos taurus GN=LSM3 PE=3 SV=3)

HSP 1 Score: 152.1 bits (383), Expect = 3.0e-36
Identity = 71/89 (79.78%), Postives = 85/89 (95.51%), Query Frame = 1 

Query: 7   STVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETY 66
           +TV+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE VTT+EID+ETY
Sbjct: 12  NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETY 71

Query: 67  EEIVRTSRRTVPFLFVRGDGVILVSPPLR 96
           EEI ++++R +P LFVRGDGV+LV+PPLR
Sbjct: 72  EEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100

[Close]
BLAST of Cp4.1LG01g21160 vs. Swiss-Prot
Match: LSM3_MOUSE (U6 snRNA-associated Sm-like protein LSm3 OS=Mus musculus GN=Lsm3 PE=1 SV=2)

HSP 1 Score: 152.1 bits (383), Expect = 3.0e-36
Identity = 71/89 (79.78%), Postives = 85/89 (95.51%), Query Frame = 1 

Query: 7   STVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETY 66
           +TV+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE VTT+EID+ETY
Sbjct: 12  NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETY 71

Query: 67  EEIVRTSRRTVPFLFVRGDGVILVSPPLR 96
           EEI ++++R +P LFVRGDGV+LV+PPLR
Sbjct: 72  EEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100

[Close]
BLAST of Cp4.1LG01g21160 vs. TrEMBL
Match: A0A0A0K8S0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G057110 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 1.6e-44
Identity = 96/97 (98.97%), Postives = 96/97 (98.97%), Query Frame = 1 

Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
          MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE VTTVE
Sbjct: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV 98
          IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV
Sbjct: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV 97

[Close]
BLAST of Cp4.1LG01g21160 vs. TrEMBL
Match: A0A0B0PV80_GOSAR (U6 snRNA-associated Sm-like protein LSm3 OS=Gossypium arboreum GN=F383_15446 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 4.7e-44
Identity = 94/96 (97.92%), Postives = 96/96 (100.00%), Query Frame = 1 

Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
          MATEE+STVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE
Sbjct: 1  MATEEDSTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT+RRTVPFLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRT 96

[Close]
BLAST of Cp4.1LG01g21160 vs. TrEMBL
Match: A0A067L8E8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04208 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 8.0e-44
Identity = 94/96 (97.92%), Postives = 95/96 (98.96%), Query Frame = 1 

Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
          MATEEES VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE
Sbjct: 1  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT+RRTVPFLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRT 96

[Close]
BLAST of Cp4.1LG01g21160 vs. TrEMBL
Match: A0A0B2SAJ4_GLYSO (U6 snRNA-associated Sm-like protein LSm3 OS=Glycine soja GN=glysoja_030105 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 1.8e-43
Identity = 93/96 (96.88%), Postives = 95/96 (98.96%), Query Frame = 1 

Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
          MATEEES VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE
Sbjct: 1  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT++RTVPFLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTKRTVPFLFVRGDGVILVSPPLRT 96

[Close]
BLAST of Cp4.1LG01g21160 vs. TrEMBL
Match: A0A0L9VK45_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan10g131300 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 1.8e-43
Identity = 93/96 (96.88%), Postives = 95/96 (98.96%), Query Frame = 1 

Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
          MATEEES VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE
Sbjct: 1  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT++RTVPFLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTKRTVPFLFVRGDGVILVSPPLRT 96

[Close]
BLAST of Cp4.1LG01g21160 vs. TAIR10
Match: AT1G21190.1 (AT1G21190.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 173.3 bits (438), Expect = 7.2e-44
Identity = 83/96 (86.46%), Postives = 95/96 (98.96%), Query Frame = 1 

Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
          M+ EE++TV+EPLDLIRLS++ERIYVKLRSDRELRGKLHA+DQHLNMILGDVEE++TT+E
Sbjct: 1  MSVEEDATVREPLDLIRLSIEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT++RTVPFLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTKRTVPFLFVRGDGVILVSPPLRT 96

[Close]
BLAST of Cp4.1LG01g21160 vs. TAIR10
Match: AT1G76860.1 (AT1G76860.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 171.4 bits (433), Expect = 2.7e-43
Identity = 85/96 (88.54%), Postives = 93/96 (96.88%), Query Frame = 1 

Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
          M+ EEE+TV+EPLDLIRLSLDERIYVKLRSDRELRGKLHA+DQHLNMILGDVEE +TTVE
Sbjct: 1  MSGEEEATVREPLDLIRLSLDERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT++RT+ FLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTKRTIEFLFVRGDGVILVSPPLRT 96

[Close]
BLAST of Cp4.1LG01g21160 vs. TAIR10
Match: AT2G47640.1 (AT2G47640.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 51.6 bits (122), Expect = 3.2e-07
Identity = 30/91 (32.97%), Postives = 57/91 (62.64%), Query Frame = 1 

Query: 3   TEEESTVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 62
           TEEE     PL ++ +S+  + ++ +  R++R+L G++ A+D+H NM+L +V E+ T V 
Sbjct: 14  TEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVP 73

Query: 63  IDDETYEEIVRTSR-RTVPFLFVRGDGVILV 91
              +  ++ +  +R R +  +F+RGD VI+V
Sbjct: 74  KTGKGKKKALPVNRDRFISKMFLRGDSVIIV 104

[Close]
BLAST of Cp4.1LG01g21160 vs. TAIR10
Match: AT3G62840.1 (AT3G62840.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 51.6 bits (122), Expect = 3.2e-07
Identity = 30/91 (32.97%), Postives = 57/91 (62.64%), Query Frame = 1 

Query: 3   TEEESTVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 62
           TEEE     PL ++ +S+  + ++ +  R++R+L G++ A+D+H NM+L +V E+ T V 
Sbjct: 14  TEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVP 73

Query: 63  IDDETYEEIVRTSR-RTVPFLFVRGDGVILV 91
              +  ++ +  +R R +  +F+RGD VI+V
Sbjct: 74  KTGKGKKKALPVNRDRFISKMFLRGDSVIIV 104

[Close]
BLAST of Cp4.1LG01g21160 vs. NCBI nr
Match: gi|659081800|ref|XP_008441520.1| (PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Cucumis melo])

HSP 1 Score: 186.4 bits (472), Expect = 2.3e-44
Identity = 96/97 (98.97%), Postives = 96/97 (98.97%), Query Frame = 1 

Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
          MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE VTTVE
Sbjct: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV 98
          IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV
Sbjct: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV 97

[Close]
BLAST of Cp4.1LG01g21160 vs. NCBI nr
Match: gi|728848891|gb|KHG28334.1| (U6 snRNA-associated Sm-like protein LSm3 [Gossypium arboreum])

HSP 1 Score: 184.9 bits (468), Expect = 6.8e-44
Identity = 94/96 (97.92%), Postives = 96/96 (100.00%), Query Frame = 1 

Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
          MATEE+STVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE
Sbjct: 1  MATEEDSTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT+RRTVPFLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRT 96

[Close]
BLAST of Cp4.1LG01g21160 vs. NCBI nr
Match: gi|802578114|ref|XP_012069360.1| (PREDICTED: sm-like protein LSM3A [Jatropha curcas])

HSP 1 Score: 184.1 bits (466), Expect = 1.2e-43
Identity = 94/96 (97.92%), Postives = 95/96 (98.96%), Query Frame = 1 

Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
          MATEEES VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE
Sbjct: 1  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT+RRTVPFLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRT 96

[Close]
BLAST of Cp4.1LG01g21160 vs. NCBI nr
Match: gi|720015745|ref|XP_010260936.1| (PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Nelumbo nucifera])

HSP 1 Score: 183.7 bits (465), Expect = 1.5e-43
Identity = 93/96 (96.88%), Postives = 95/96 (98.96%), Query Frame = 1 

Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
          MATEEES VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEI+TTVE
Sbjct: 1  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIITTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT+RRTVPFLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRT 96

[Close]
BLAST of Cp4.1LG01g21160 vs. NCBI nr
Match: gi|351722343|ref|NP_001235961.1| (uncharacterized protein LOC100499782 [Glycine max])

HSP 1 Score: 183.0 bits (463), Expect = 2.6e-43
Identity = 93/96 (96.88%), Postives = 95/96 (98.96%), Query Frame = 1 

Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
          MATEEES VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE
Sbjct: 1  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRT++RTVPFLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTKRTVPFLFVRGDGVILVSPPLRT 96

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g21160 vs. Swiss-Prot
Match NameE-valueIdentityDescription
LSM3A_ARATH1.3e-4286.46Sm-like protein LSM3A OS=Arabidopsis thaliana GN=LSM3A PE=1 SV=1[more]
LSM3B_ARATH4.8e-4288.54Sm-like protein LSM3B OS=Arabidopsis thaliana GN=LSM3B PE=1 SV=1[more]
LSM3_HUMAN3.0e-3679.78U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens GN=LSM3 PE=1 SV=2[more]
LSM3_BOVIN3.0e-3679.78U6 snRNA-associated Sm-like protein LSm3 OS=Bos taurus GN=LSM3 PE=3 SV=3[more]
LSM3_MOUSE3.0e-3679.78U6 snRNA-associated Sm-like protein LSm3 OS=Mus musculus GN=Lsm3 PE=1 SV=2[more]
BLAST of Cp4.1LG01g21160 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K8S0_CUCSA1.6e-4498.97Uncharacterized protein OS=Cucumis sativus GN=Csa_6G057110 PE=4 SV=1[more]
A0A0B0PV80_GOSAR4.7e-4497.92U6 snRNA-associated Sm-like protein LSm3 OS=Gossypium arboreum GN=F383_15446 PE=... [more]
A0A067L8E8_JATCU8.0e-4497.92Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04208 PE=4 SV=1[more]
A0A0B2SAJ4_GLYSO1.8e-4396.88U6 snRNA-associated Sm-like protein LSm3 OS=Glycine soja GN=glysoja_030105 PE=4 ... [more]
A0A0L9VK45_PHAAN1.8e-4396.88Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan10g131300 PE=4 SV=1[more]
BLAST of Cp4.1LG01g21160 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G21190.17.2e-4486.46 Small nuclear ribonucleoprotein family protein[more]
AT1G76860.12.7e-4388.54 Small nuclear ribonucleoprotein family protein[more]
AT2G47640.13.2e-0732.97 Small nuclear ribonucleoprotein family protein[more]
AT3G62840.13.2e-0732.97 Small nuclear ribonucleoprotein family protein[more]
BLAST of Cp4.1LG01g21160 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659081800|ref|XP_008441520.1|2.3e-4498.97PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Cucumis melo][more]
gi|728848891|gb|KHG28334.1|6.8e-4497.92U6 snRNA-associated Sm-like protein LSm3 [Gossypium arboreum][more]
gi|802578114|ref|XP_012069360.1|1.2e-4397.92PREDICTED: sm-like protein LSM3A [Jatropha curcas][more]
gi|720015745|ref|XP_010260936.1|1.5e-4396.88PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Nelumbo nucifera][more]
gi|351722343|ref|NP_001235961.1|2.6e-4396.88uncharacterized protein LOC100499782 [Glycine max][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010920LSM_dom_sf
IPR001163LSM_dom_euk/arc
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0033962 cytoplasmic mRNA processing body assembly
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0000956 nuclear-transcribed mRNA catabolic process
cellular_component GO:0030529 intracellular ribonucleoprotein complex
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0071013 catalytic step 2 spliceosome
cellular_component GO:0000932 cytoplasmic mRNA processing body
cellular_component GO:1990726 Lsm1-7-Pat1 complex
cellular_component GO:0071011 precatalytic spliceosome
cellular_component GO:0046540 U4/U6 x U5 tri-snRNP complex
cellular_component GO:0005688 U6 snRNP
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g21160.1Cp4.1LG01g21160.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 16..92
score: 1.0
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 14..92
score: 1.1
IPR010920LSM domainunknownSSF50182Sm-like ribonucleoproteinscoord: 11..93
score: 4.78
NoneNo IPR availableGENE3DG3DSA:2.30.30.100coord: 10..93
score: 2.5
NoneNo IPR availablePANTHERPTHR13110U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM3coord: 1..97
score: 7.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g21160Cucsa.363670Cucumber (Gy14) v1cgycpeB0961
Cp4.1LG01g21160CmaCh15G005990Cucurbita maxima (Rimu)cmacpeB318
Cp4.1LG01g21160CmaCh04G024470Cucurbita maxima (Rimu)cmacpeB721
Cp4.1LG01g21160CmoCh04G025620Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g21160CmoCh15G006050Cucurbita moschata (Rifu)cmocpeB280
Cp4.1LG01g21160Cla013820Watermelon (97103) v1cpewmB393
Cp4.1LG01g21160Csa6G057110Cucumber (Chinese Long) v2cpecuB459
Cp4.1LG01g21160MELO3C008344Melon (DHL92) v3.5.1cpemeB401
Cp4.1LG01g21160ClCG08G006960Watermelon (Charleston Gray)cpewcgB415
Cp4.1LG01g21160CSPI06G04950Wild cucumber (PI 183967)cpecpiB460
Cp4.1LG01g21160Lsi08G005530Bottle gourd (USVL1VR-Ls)cpelsiB382
Cp4.1LG01g21160MELO3C008344.2Melon (DHL92) v3.6.1cpemedB468
Cp4.1LG01g21160CsaV3_6G005290Cucumber (Chinese Long) v3cpecucB0568
Cp4.1LG01g21160Bhi04G001366Wax gourdcpewgoB0533
Cp4.1LG01g21160CsGy6G004860Cucumber (Gy14) v2cgybcpeB797
Cp4.1LG01g21160Carg01601Silver-seed gourdcarcpeB1158
Cp4.1LG01g21160Carg15789Silver-seed gourdcarcpeB0096
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG01g21160Cp4.1LG13g03930Cucurbita pepo (Zucchini)cpecpeB199
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g21160Cucumber (Chinese Long) v3cpecucB0572
Cp4.1LG01g21160Cucumber (Chinese Long) v3cpecucB0584
Cp4.1LG01g21160Cucurbita pepo (Zucchini)cpecpeB404
Cp4.1LG01g21160Cucumber (Gy14) v1cgycpeB0136
Cp4.1LG01g21160Cucurbita moschata (Rifu)cmocpeB014
Cp4.1LG01g21160Cucumber (Chinese Long) v2cpecuB473
Cp4.1LG01g21160Bottle gourd (USVL1VR-Ls)cpelsiB338
Cp4.1LG01g21160Cucumber (Gy14) v2cgybcpeB943